CmaCh17G012320 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G012320
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	S-protein homolog
Location	Cma_Chr17: 8469219 .. 8470133 (-)
RNA-Seq Expression	CmaCh17G012320
Synteny	CmaCh17G012320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAGGACTGTGGCTGCATTGTTGCTAGTGACGGTGAGTTTGGTCAGGGCTCACCTCGAAGTTGAGTATGAGAGGATCAATATAAAGCTGCCACTTTCTAGGTATTACATTCATTTCGTTAACGATCTAAGCATCCTTGGTATGATGGTGCACTGCCAGTCGAAGGACGATGATTTGGGAGTTCATCATTTGCTTAATCGGGGAGATAATTACCAATTTAACTTTAGGGTTAACTTTTGGAGAACAACCCTCTTTTGGTGTGATGTGAATAGGCCCGATACAAACGTCTCTTTTCAATGCTTTTGGCCTGAGAAGATGAGCACATGGCTTCGTGATAGATGCCGAGATGGAAATGTAGGAACTTGTATCTGGAAGTTTAAAGACGATGGAATTTACTTGAGAAACAATGCAGCTAATACGGATGAATTGATTCATAAATGGACCTTTACGAGATAAAGAACCTTTATATACTGATGAATTGGTTCATAAATGAACCTTTACGAGATAAATAACCTTTATATACTGATGAATTGGTTCATAAATAGACCTTTACGAGATAAAGAACCTTTATATACTGGTGAATTGATTCATAAATGGACCTTTACGAGATAAATAACCTTTATTATTAATTCATTTTGTTTTTGAATTATTCCTGAACAAAGGAAAGATACAAACATTTGAAGTTCGAATAAAGAATAAGATGGGTAACACCCTTGAATGTTTTTTTTTTTTTAATATATTTGATAACTAAATTAAGTTTTTTTTTTTTGCTCTAAAATTGAAAATTAACAACAAAAATTTGAAATGATTACTTGTATTTCTAAATTGTTAGCATTATTTTATCATCAACGTTATAATATAGTATTTATAACTTTAATCTTATATTATAAGAAAGTAATTAGTATTTTATAA

mRNA sequence

ATGATAAGGACTGTGGCTGCATTGTTGCTAGTGACGGTGAGTTTGGTCAGGGCTCACCTCGAAGTTGAGTATGAGAGGATCAATATAAAGCTGCCACTTTCTAGGTATTACATTCATTTCGTTAACGATCTAAGCATCCTTGGTATGATGGTGCACTGCCAGTCGAAGGACGATGATTTGGGAGTTCATCATTTGCTTAATCGGGGAGATAATTACCAATTTAACTTTAGGAAAGTAATTAGTATTTTATAA

Coding sequence (CDS)

ATGATAAGGACTGTGGCTGCATTGTTGCTAGTGACGGTGAGTTTGGTCAGGGCTCACCTCGAAGTTGAGTATGAGAGGATCAATATAAAGCTGCCACTTTCTAGGTATTACATTCATTTCGTTAACGATCTAAGCATCCTTGGTATGATGGTGCACTGCCAGTCGAAGGACGATGATTTGGGAGTTCATCATTTGCTTAATCGGGGAGATAATTACCAATTTAACTTTAGGAAAGTAATTAGTATTTTATAA

Protein sequence

MIRTVAALLLVTVSLVRAHLEVEYERINIKLPLSRYYIHFVNDLSILGMMVHCQSKDDDLGVHHLLNRGDNYQFNFRKVISIL

Homology

[Close]

BLAST of CmaCh17G012320 vs. ExPASy TrEMBL
Match: A0A6J1GPJ8 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456305 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.6e-31
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MIRTVAALLLVTVSLVRAHLEVEYERINIKLPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MIR VAALLLVTVSLV AHLEVE+E+INIK PLSRYYIHFVNDLSILGMMVHCQSKDDDL
Sbjct: 1  MIRIVAALLLVTVSLVGAHLEVEFEKINIKPPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60

Query: 61 GVHHLLNRGDNYQFNFR 78
          GVHHLLNRGDNYQFNFR
Sbjct: 61 GVHHLLNRGDNYQFNFR 77

[Close]

BLAST of CmaCh17G012320 vs. ExPASy TrEMBL
Match: A0A6J1GPL8 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456306 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.9e-18
Identity = 47/77 (61.04%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1  MIRTVAALLLVTVSLVRAHLEVEYERINIKLPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MIR VAAL L+TVSLV A LEVE+E+I ++  ++RY IH VNDL + G+MVHC+S+DDDL
Sbjct: 1  MIRNVAALFLMTVSLVGAQLEVEFEKIKLEPQITRYTIHLVNDLKVFGIMVHCKSRDDDL 60

Query: 61 GVHHLLNRGDNYQFNFR 78
          GVH++ +RGD+Y F F+
Sbjct: 61 GVHYMPHRGDDYHFGFK 77

[Close]

BLAST of CmaCh17G012320 vs. ExPASy TrEMBL
Match: A0A6J1JTV9 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488298 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1  MIRTVAALLLVTVSLVRAHLEVEYERINIKLPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MIR VAALLLVTVS V A L+VE E++ +K  +  Y IH VNDL +LG+MVHC+S+DDDL
Sbjct: 1  MIRNVAALLLVTVSFVGAQLDVESEKLKLKPQIFSYTIHLVNDLKVLGIMVHCKSRDDDL 60

Query: 61 GVHHLLNRGDNYQFNFR 78
          GVH+L +RGD+Y F F+
Sbjct: 61 GVHYLSHRGDDYHFGFK 77

[Close]

BLAST of CmaCh17G012320 vs. ExPASy TrEMBL
Match: A0A6J1JX75 (S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488296 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.8e-17
Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 1  MIRTVAALLLVTVSLVRAHLEVEYERINIKLPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MIR VAALLLVTV LV A  EVE ++INI+  +S+YYIH +NDLSI  M VHC+S DDDL
Sbjct: 1  MIRNVAALLLVTVGLVGAQPEVESQKINIQPLISKYYIHLINDLSIPDMTVHCKSDDDDL 60

Query: 61 GVHHLLNRGDNYQFNFR 78
          G+HH L +G++YQFNF+
Sbjct: 61 GIHH-LQKGEDYQFNFK 76

[Close]

BLAST of CmaCh17G012320 vs. ExPASy TrEMBL
Match: A0A6J1GPL3 (S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456302 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.5e-17
Identity = 50/78 (64.10%), Postives = 62/78 (79.49%), Query Frame = 0


Query: 1  MIRTVAALLLVTVSLVRAHLEVEYERINIKLP-LSRYYIHFVNDLSILGMMVHCQSKDDD 60
          MIR VAAL LV V LV A LEVE E+IN++ P +S Y IH VNDL +LG+ VHC+SKDDD
Sbjct: 1  MIRNVAALFLVMVGLVGAQLEVESEKINVEPPRISSYNIHLVNDLQVLGITVHCKSKDDD 60

Query: 61 LGVHHLLNRGDNYQFNFR 78
          LGVH+L +RGD+Y F+F+
Sbjct: 61 LGVHNLPHRGDDYHFSFK 78

[Close]

BLAST of CmaCh17G012320 vs. NCBI nr
Match: XP_022953902.1 (S-protein homolog 6-like [Cucurbita moschata])

HSP 1 Score: 143.3 bits (360), Expect = 9.5e-31
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MIRTVAALLLVTVSLVRAHLEVEYERINIKLPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MIR VAALLLVTVSLV AHLEVE+E+INIK PLSRYYIHFVNDLSILGMMVHCQSKDDDL
Sbjct: 1  MIRIVAALLLVTVSLVGAHLEVEFEKINIKPPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60

Query: 61 GVHHLLNRGDNYQFNFR 78
          GVHHLLNRGDNYQFNFR
Sbjct: 61 GVHHLLNRGDNYQFNFR 77

[Close]

BLAST of CmaCh17G012320 vs. NCBI nr
Match: XP_023549413.1 (S-protein homolog 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 138.7 bits (348), Expect = 2.3e-29
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MIRTVAALLLVTVSLVRAHLEVEYERINIKLPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MIR VAALLLVTVSLV AHLEVE E+INIK PLSRYYIHFVNDLS+LGMMVHCQSKDDDL
Sbjct: 1  MIRIVAALLLVTVSLVGAHLEVESEKINIKPPLSRYYIHFVNDLSVLGMMVHCQSKDDDL 60

Query: 61 GVHHLLNRGDNYQFNFR 78
          GV+HLLNRGDNYQFNFR
Sbjct: 61 GVYHLLNRGDNYQFNFR 77

[Close]

BLAST of CmaCh17G012320 vs. NCBI nr
Match: XP_023549415.1 (S-protein homolog 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.6 bits (257), Expect = 8.4e-19
Identity = 51/77 (66.23%), Postives = 65/77 (84.42%), Query Frame = 0


Query: 1  MIRTVAALLLVTVSLVRAHLEVEYERINIKLPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MIR VAALLL+TV LVRA  EVE E+IN++ P+S+YYIH +NDLSI  M VHC+S DDDL
Sbjct: 1  MIRNVAALLLMTVCLVRAQPEVESEKINVQPPISKYYIHLINDLSISDMTVHCKSADDDL 60

Query: 61 GVHHLLNRGDNYQFNFR 78
          G+HH L++G++YQFNF+
Sbjct: 61 GIHH-LHKGEDYQFNFK 76

[Close]

BLAST of CmaCh17G012320 vs. NCBI nr
Match: XP_022953903.1 (S-protein homolog 1-like [Cucurbita moschata])

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 47/77 (61.04%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1  MIRTVAALLLVTVSLVRAHLEVEYERINIKLPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MIR VAAL L+TVSLV A LEVE+E+I ++  ++RY IH VNDL + G+MVHC+S+DDDL
Sbjct: 1  MIRNVAALFLMTVSLVGAQLEVEFEKIKLEPQITRYTIHLVNDLKVFGIMVHCKSRDDDL 60

Query: 61 GVHHLLNRGDNYQFNFR 78
          GVH++ +RGD+Y F F+
Sbjct: 61 GVHYMPHRGDDYHFGFK 77

[Close]

BLAST of CmaCh17G012320 vs. NCBI nr
Match: XP_022991765.1 (S-protein homolog 1-like [Cucurbita maxima])

HSP 1 Score: 97.8 bits (242), Expect = 4.6e-17
Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 0


Query: 1  MIRTVAALLLVTVSLVRAHLEVEYERINIKLPLSRYYIHFVNDLSILGMMVHCQSKDDDL 60
          MIR VAALLLVTVS V A L+VE E++ +K  +  Y IH VNDL +LG+MVHC+S+DDDL
Sbjct: 1  MIRNVAALLLVTVSFVGAQLDVESEKLKLKPQIFSYTIHLVNDLKVLGIMVHCKSRDDDL 60

Query: 61 GVHHLLNRGDNYQFNFR 78
          GVH+L +RGD+Y F F+
Sbjct: 61 GVHYLSHRGDDYHFGFK 77

The following BLAST results are available for this feature:

BLAST of CmaCh17G012320 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G012320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GPJ8	4.6e-31	93.51	S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456305 PE=3 SV=1	[more]
A0A6J1GPL8	5.9e-18	61.04	S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456306 PE=3 SV=1	[more]
A0A6J1JTV9	2.2e-17	62.34	S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488298 PE=3 SV=1	[more]
A0A6J1JX75	3.8e-17	64.94	S-protein homolog OS=Cucurbita maxima OX=3661 GN=LOC111488296 PE=3 SV=1	[more]
A0A6J1GPL3	6.5e-17	64.10	S-protein homolog OS=Cucurbita moschata OX=3662 GN=LOC111456302 PE=3 SV=1	[more]

BLAST of CmaCh17G012320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953902.1	9.5e-31	93.51	S-protein homolog 6-like [Cucurbita moschata]	[more]
XP_023549413.1	2.3e-29	90.91	S-protein homolog 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_023549415.1	8.4e-19	66.23	S-protein homolog 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022953903.1	1.2e-17	61.04	S-protein homolog 1-like [Cucurbita moschata]	[more]
XP_022991765.1	4.6e-17	62.34	S-protein homolog 1-like [Cucurbita maxima]	[more]

BLAST of CmaCh17G012320 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 38..79 e-value: 1.0E-6 score: 29.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G012320.1	CmaCh17G012320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0060320	rejection of self pollen
cellular_component	GO:0005576	extracellular region