CmaCh17G011690 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh17G011690
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description40S ribosomal protein S19
LocationCma_Chr17: 8125576 .. 8127529 (-)
RNA-Seq ExpressionCmaCh17G011690
SyntenyCmaCh17G011690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGCACTTATCTCTCCTCGAAAACCCTAGAGTTTGAGAAAGGCGGAAGCCCTAGTTCTGCAATCGGAGCTTTTGCCGGCCTTTGCTCACTGAATTCCGCAGACATGGCGACTGCAAGGACCGTTAAGGATGTCTCTCCTCATGAGTTTGTCAAGGCCTACGCCGCTCATCTCAAGCGATCCGGAAAGGTATCTATTTGGTTTTCTCAAATCGGGTTTTTCTGTTTTGGTAGCTGAGAGAACTTGATTTTCGGTTCAACGGAGTTTTTAGGATGTCGATAAACAGAGCGAATACTGAATTTGAAGTTCCAACGTTTCTAGTTCTTTCGTGGAGTGTGCTCGATTCTGCATTGTTTTCCCATTTTATTTACTTATTTTGGCACCTATTGTAGTTTTTTTTCAACATATCCTTCACTATCAAGAATGGTGGTTGCAATTGTTAGGCTGTAGACTTTTCTAATGACCTGCTACTAATTTGTAGTTAATAAACCAGTTATGATCTATAACATATGTGATTTTAACTTATTTTCTGTGTAAATCAATGCCGAGCAGGTTGAACTTCCGCCATGGACAGATATAGTCAAAACTGCAAGATTCAAAGAACTCGCCCCATATGATCCTGATTGGTATTACGTGAGAGCTGGTTAGTTTCCCTTTTTCTACTTTTTGACGTCCAATTATATGAAATAAATAAATAAAAATGTAATTTAATTGCGGCAGTTGTATGCATGTTCTATCTGTGGTATTCTTATCAACACTATTTCAAACTCATTCAGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGAATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGTGAAAGCAGTGGTGCCATCGCCCGGCACATCCTACAACAGTTGCAAGAGATGAACATTGTTGATGTGGACCCAAAGGGGTGAGTACTAACTTCTTATAGTCCATGTTTTATAAAACTATTGGGGCTTGCATTGAGTCCAGACTCACTTTTAGCCTCTAGAATGCCTTCGATGAACATAACAGGCTCATGCCTTTCATAGAAAAAAGCCTTATGCTTATGTAAAACAACCCATTGAGGCTTAAAATATTTATGTCTTCCGCAATGATTAGAAAAATAATATTGATTTGCCTCATTATTAATAAATACAAATGTTTGAGTTGTGACAATTTGAATTATTGCTACGACTTTGAAACATTGAAGAAAAGAAATTATAGTACAAGTCAATCCTACTCCTGATAATAGCAATTGATGTTAAAGATTAAGTGTCAAATTGTATTTGAGAGGTTTTTGTATTTTATTTGATTATTATGTTTAGCAATATTTGATTAACTAATTTAGGATTTGAATAATGTTTTTAATTAAATTTGAGACTTACCCCTCATACTACCTCAAGTTTTACACCTTGCCTGCTCAAGTCGAACAACTTTGAGGCTGCCTTTAACCTTATAAAACAATGCTTATAGTTATAGCATATTAGTCATTACTACTATTTTTCCTCCCATTACAACTGATTATTCATTTGATTATGTTGGTTGATGTGTTTTTCTTTTTGCATGGGTTTGCAGTGGAAGGAGAATTACTTCAAGCGGGCGACGGGATCTCGATCAAGTTGCTGGCAGAATTGTTGTTGCCCCTTAGATTGATCAATTACCTGTTTTGTTAACTCGAGACTTATATTTTGCTGATGAGATATAATTTCTTATGTTTTGCGCCATTAAAGTTTTAGATTTAGCTGTTGAAAGATTTTCCAGATGAAGATGGTTGCTCATGTTTTATCACGAGTTTTGAATTGTCTGTCATTTTCTCTTCCGTTCATTATATTTTTTATGCTCTCAATGTTTTATCAACACTAACTTTGATGCTTGGCCTACAGAAGTTGTGCATTTAGAGGTATATTTATTCAGTTTTGTTTA

mRNA sequence

AGGGCACTTATCTCTCCTCGAAAACCCTAGAGTTTGAGAAAGGCGGAAGCCCTAGTTCTGCAATCGGAGCTTTTGCCGGCCTTTGCTCACTGAATTCCGCAGACATGGCGACTGCAAGGACCGTTAAGGATGTCTCTCCTCATGAGTTTGTCAAGGCCTACGCCGCTCATCTCAAGCGATCCGGAAAGGTTGAACTTCCGCCATGGACAGATATAGTCAAAACTGCAAGATTCAAAGAACTCGCCCCATATGATCCTGATTGGTATTACGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGAATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGTGAAAGCAGTGGTGCCATCGCCCGGCACATCCTACAACATGGAAGGAGAATTACTTCAAGCGGGCGACGGGATCTCGATCAAGTTGCTGGCAGAATTGTTGTTGCCCCTTAGATTGATCAATTACCTGTTTTGTTAACTCGAGACTTATATTTTGCTGATGAGATATAATTTCTTATGTTTTGCGCCATTAAAGTTTTAGATTTAGCTGTTGAAAGATTTTCCAGATGAAGATGGTTGCTCATGTTTTATCACGAGTTTTGAATTGTCTGTCATTTTCTCTTCCGTTCATTATATTTTTTATGCTCTCAATGTTTTATCAACACTAACTTTGATGCTTGGCCTACAGAAGTTGTGCATTTAGAGGTATATTTATTCAGTTTTGTTTA

Coding sequence (CDS)

ATGGCGACTGCAAGGACCGTTAAGGATGTCTCTCCTCATGAGTTTGTCAAGGCCTACGCCGCTCATCTCAAGCGATCCGGAAAGGTTGAACTTCCGCCATGGACAGATATAGTCAAAACTGCAAGATTCAAAGAACTCGCCCCATATGATCCTGATTGGTATTACGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTGGGGCATTTAAGCGAATTTATGGTGGAAGCAAGAGGAATGGAAGTCGCCCTCCACACTTTTGTGAAAGCAGTGGTGCCATCGCCCGGCACATCCTACAACATGGAAGGAGAATTACTTCAAGCGGGCGACGGGATCTCGATCAAGTTGCTGGCAGAATTGTTGTTGCCCCTTAG

Protein sequence

MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQHGRRITSSGRRDLDQVAGRIVVAP
Homology
[Close]
BLAST of CmaCh17G011690 vs. ExPASy Swiss-Prot
Match: Q9SGA6 (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.9e-60
Identity = 112/143 (78.32%), Postives = 122/143 (85.31%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQ              
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 131
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of CmaCh17G011690 vs. ExPASy Swiss-Prot
Match: Q9FNP8 (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 9.3e-60
Identity = 111/142 (78.17%), Postives = 121/142 (85.21%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQ              
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 130
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of CmaCh17G011690 vs. ExPASy Swiss-Prot
Match: Q9LF30 (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.1e-59
Identity = 112/139 (80.58%), Postives = 120/139 (86.33%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQ              
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 127
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

[Close]
BLAST of CmaCh17G011690 vs. ExPASy Swiss-Prot
Match: P40978 (40S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 7.6e-54
Identity = 103/140 (73.57%), Postives = 116/140 (82.86%), Query Frame = 0 

Query: 2   ATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASM 61
           +TARTVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYDPDWYY RAAS+
Sbjct: 4   STARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASI 63

Query: 62  ARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH-------------G 121
           ARKIYLR G+GVG F++IYGG +RNGSRPPHFC+SSGAI+R+ILQ              G
Sbjct: 64  ARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGG 123

Query: 122 RRITSSGRRDLDQVAGRIVV 129
           R ITS GRRDLDQVAGR+ V
Sbjct: 124 RLITSQGRRDLDQVAGRVDV 143

[Close]
BLAST of CmaCh17G011690 vs. ExPASy Swiss-Prot
Match: Q94613 (40S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 9.1e-39
Identity = 71/134 (52.99%), Postives = 101/134 (75.37%), Query Frame = 0 

Query: 6   TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAASMARKI 65
           +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+PDWY++RAAS+ R +
Sbjct: 4   SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63

Query: 66  YLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH-------------GRRIT 125
           Y+R   G+G+F++IYGG +R G+ P HFC+++G+I+R +LQ              GRR+T
Sbjct: 64  YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLT 123

Query: 126 SSGRRDLDQVAGRI 127
           S GRRDLD++A +I
Sbjct: 124 SQGRRDLDRIAAQI 137

[Close]
BLAST of CmaCh17G011690 vs. ExPASy TrEMBL
Match: A0A6J1JTW8 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 5.9e-65
Identity = 129/143 (90.21%), Postives = 129/143 (90.21%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQ              
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 131
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of CmaCh17G011690 vs. ExPASy TrEMBL
Match: A0A6J1H7M6 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 5.9e-65
Identity = 129/143 (90.21%), Postives = 129/143 (90.21%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQ              
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 131
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of CmaCh17G011690 vs. ExPASy TrEMBL
Match: A0A6J1JTL0 (40S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.3e-64
Identity = 128/143 (89.51%), Postives = 129/143 (90.21%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQ              
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 131
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of CmaCh17G011690 vs. ExPASy TrEMBL
Match: A0A6J1EBL3 (40S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.3e-64
Identity = 128/143 (89.51%), Postives = 129/143 (90.21%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQ              
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 131
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of CmaCh17G011690 vs. ExPASy TrEMBL
Match: A0A6J1JX06 (40S ribosomal protein S19-3 OS=Cucurbita maxima OX=3661 GN=LOC111489602 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.9e-64
Identity = 127/143 (88.81%), Postives = 129/143 (90.21%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQ              
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 131
           GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRKITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of CmaCh17G011690 vs. NCBI nr
Match: KAG6593129.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256.5 bits (654), Expect = 1.2e-64
Identity = 129/143 (90.21%), Postives = 129/143 (90.21%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 542 MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 601

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQ              
Sbjct: 602 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 661

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 131
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 662 GRRITSSGRRDLDQVAGRIVVAP 684

[Close]
BLAST of CmaCh17G011690 vs. NCBI nr
Match: XP_022954406.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022992561.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023004681.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023547478.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6575902.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014435.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7027262.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256.5 bits (654), Expect = 1.2e-64
Identity = 129/143 (90.21%), Postives = 129/143 (90.21%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQ              
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 131
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of CmaCh17G011690 vs. NCBI nr
Match: XP_022923365.1 (40S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S ribosomal protein S19-3-like [Cucurbita maxima] >XP_023513208.1 40S ribosomal protein S19-3-like [Cucurbita pepo subsp. pepo] >KAG6602529.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033203.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.4 bits (651), Expect = 2.7e-64
Identity = 128/143 (89.51%), Postives = 129/143 (90.21%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQ              
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 131
           GRRITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRRITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of CmaCh17G011690 vs. NCBI nr
Match: XP_022938991.1 (40S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal protein S19-3 [Cucurbita maxima] >XP_023549630.1 40S ribosomal protein S19-3 [Cucurbita pepo subsp. pepo] >KAG7016113.1 40S ribosomal protein S19-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 254.2 bits (648), Expect = 6.0e-64
Identity = 127/143 (88.81%), Postives = 129/143 (90.21%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 1   MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQ              
Sbjct: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 131
           GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 121 GRKITSSGRRDLDQVAGRIVVAP 143

[Close]
BLAST of CmaCh17G011690 vs. NCBI nr
Match: KAG6578553.1 (40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 254.2 bits (648), Expect = 6.0e-64
Identity = 127/143 (88.81%), Postives = 129/143 (90.21%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS
Sbjct: 40  MATAKTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 99

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQ              
Sbjct: 100 MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKG 159

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 131
           GR+ITSSGRRDLDQVAGRIVVAP
Sbjct: 160 GRKITSSGRRDLDQVAGRIVVAP 182

[Close]
BLAST of CmaCh17G011690 vs. TAIR 10
Match: AT3G02080.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-61
Identity = 112/143 (78.32%), Postives = 122/143 (85.31%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQ              
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVAP 131
           GRRITSSG+RDLDQVAGRI V P
Sbjct: 121 GRRITSSGQRDLDQVAGRIAVEP 143

[Close]
BLAST of CmaCh17G011690 vs. TAIR 10
Match: AT5G61170.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 230.7 bits (587), Expect = 6.6e-61
Identity = 111/142 (78.17%), Postives = 121/142 (85.21%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARK+YLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG +ARHILQ              
Sbjct: 61  MARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRIVVA 130
           GR+ITSSG+RDLDQVAGRI  A
Sbjct: 121 GRKITSSGQRDLDQVAGRIAAA 142

[Close]
BLAST of CmaCh17G011690 vs. TAIR 10
Match: AT5G15520.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 229.6 bits (584), Expect = 1.5e-60
Identity = 112/139 (80.58%), Postives = 120/139 (86.33%), Query Frame = 0 

Query: 1   MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAAS 60
           MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RAAS
Sbjct: 1   MATGKTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAAS 60

Query: 61  MARKIYLRGGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQH------------- 120
           MARKIYLRGGLGVGAF+RIYGGSKRNGSRPPHFC+SSG IARHILQ              
Sbjct: 61  MARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKG 120

Query: 121 GRRITSSGRRDLDQVAGRI 127
           GRRITSSG+RDLDQVAGRI
Sbjct: 121 GRRITSSGQRDLDQVAGRI 139

The following BLAST results are available for this feature:
BLAST of CmaCh17G011690 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SGA61.9e-6078.3240S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1[more]
Q9FNP89.3e-6078.1740S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1[more]
Q9LF302.1e-5980.5840S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1[more]
P409787.6e-5473.5740S ribosomal protein S19 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS19A PE=... [more]
Q946139.1e-3952.9940S ribosomal protein S19 OS=Mya arenaria OX=6604 GN=RPS19 PE=2 SV=1[more]
BLAST of CmaCh17G011690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JTW85.9e-6590.2140S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111488847 PE=... [more]
A0A6J1H7M65.9e-6590.2140S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111461230 P... [more]
A0A6J1JTL01.3e-6489.5140S ribosomal protein S19-3-like OS=Cucurbita maxima OX=3661 GN=LOC111487728 PE=... [more]
A0A6J1EBL31.3e-6489.5140S ribosomal protein S19-3-like OS=Cucurbita moschata OX=3662 GN=LOC111431083 P... [more]
A0A6J1JX062.9e-6488.8140S ribosomal protein S19-3 OS=Cucurbita maxima OX=3661 GN=LOC111489602 PE=3 SV=... [more]
BLAST of CmaCh17G011690 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6593129.11.2e-6490.21Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
XP_022954406.11.2e-6490.2140S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022960517.1 40S riboso... [more]
XP_022923365.12.7e-6489.5140S ribosomal protein S19-3-like [Cucurbita moschata] >XP_022991009.1 40S riboso... [more]
XP_022938991.16.0e-6488.8140S ribosomal protein S19-3 [Cucurbita moschata] >XP_022993681.1 40S ribosomal p... [more]
KAG6578553.16.0e-6488.8140S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmaCh17G011690 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G02080.11.3e-6178.32Ribosomal protein S19e family protein [more]
AT5G61170.16.6e-6178.17Ribosomal protein S19e family protein [more]
AT5G15520.11.5e-6080.58Ribosomal protein S19e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001266Ribosomal protein S19eSMARTSM01413Ribosomal_S19e_2coord: 6..129
e-value: 1.4E-70
score: 250.5
IPR001266Ribosomal protein S19ePFAMPF01090Ribosomal_S19ecoord: 6..127
e-value: 2.8E-46
score: 156.6
IPR001266Ribosomal protein S19ePANTHERPTHR1171040S RIBOSOMAL PROTEIN S19coord: 3..129
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 1..129
e-value: 3.8E-60
score: 204.2
NoneNo IPR availablePANTHERPTHR11710:SF2040S RIBOSOMAL PROTEIN S19-3coord: 3..129
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 6..128

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G011690.1CmaCh17G011690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome