CmaCh17G011390 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G011390
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	glutamic acid-rich protein
Location	Cma_Chr17: 7936878 .. 7937264 (+)
RNA-Seq Expression	CmaCh17G011390
Synteny	CmaCh17G011390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTCAACTCCATTCTTCTTCAACTTCCATCCTCACCAATTTGGCAATCACATTGAGGATTTTTCATCTCATTTGCTTTTCGAGGCCACCGGCGACTCCGAGGCCGACTCCTTGGTTGGCCACGGAAGCTCGACCGTCTCGGTGGAGTTTAACGACGCTGAATCTTGCACGGATGACACTCCTGCTATGTGTAACGAATTCAAGACGTATGAAAACGATGACGACGACGACGACGACGACGAGGAGAATGATGAGGAGGTCGAAAGCAAGCCAATTGGATTCATGACAGAGTCAAGTGCTTCTATTGATTCAGCTGAGGAGTTCAAAATGTTGAATGAGGTGGACAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAA

mRNA sequence

ATGCTCTCAACTCCATTCTTCTTCAACTTCCATCCTCACCAATTTGGCAATCACATTGAGGATTTTTCATCTCATTTGCTTTTCGAGGCCACCGGCGACTCCGAGGCCGACTCCTTGGTTGGCCACGGAAGCTCGACCGTCTCGGTGGAGTTTAACGACGCTGAATCTTGCACGGATGACACTCCTGCTATGTGTAACGAATTCAAGACGTATGAAAACGATGACGACGACGACGACGACGACGAGGAGAATGATGAGGAGGTCGAAAGCAAGCCAATTGGATTCATGACAGAGTCAAGTGCTTCTATTGATTCAGCTGAGGAGTTCAAAATGTTGAATGAGGTGGACAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAA

Coding sequence (CDS)

ATGCTCTCAACTCCATTCTTCTTCAACTTCCATCCTCACCAATTTGGCAATCACATTGAGGATTTTTCATCTCATTTGCTTTTCGAGGCCACCGGCGACTCCGAGGCCGACTCCTTGGTTGGCCACGGAAGCTCGACCGTCTCGGTGGAGTTTAACGACGCTGAATCTTGCACGGATGACACTCCTGCTATGTGTAACGAATTCAAGACGTATGAAAACGATGACGACGACGACGACGACGACGAGGAGAATGATGAGGAGGTCGAAAGCAAGCCAATTGGATTCATGACAGAGTCAAGTGCTTCTATTGATTCAGCTGAGGAGTTCAAAATGTTGAATGAGGTGGACAAAAACAGGTTGTTTTGGGAGACTTGTTTGGCTTCATAA

Protein sequence

MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDDTPAMCNEFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSAEEFKMLNEVDKNRLFWETCLAS

Homology

[Close]

BLAST of CmaCh17G011390 vs. ExPASy TrEMBL
Match: A0A6J1JVN0 (uncharacterized protein LOC111488264 OS=Cucurbita maxima OX=3661 GN=LOC111488264 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.7e-64
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD 60
           MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD
Sbjct: 1   MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD 60

Query: 61  TPAMCNEFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSAEEFKMLNEVDKNRL 120
           TPAMCNEFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSAEEFKMLNEVDKNRL
Sbjct: 61  TPAMCNEFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSAEEFKMLNEVDKNRL 120

Query: 121 FWETCLAS 129
           FWETCLAS
Sbjct: 121 FWETCLAS 128

[Close]

BLAST of CmaCh17G011390 vs. ExPASy TrEMBL
Match: A0A6J1GRH1 (uncharacterized protein LOC111456367 OS=Cucurbita moschata OX=3662 GN=LOC111456367 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.5e-54
Identity = 114/128 (89.06%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 1   MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD 60
           MLSTPFFFNFHPHQ+G HIEDFSS LLFEATGDSEADSLVGHGSSTVSVEFNDAESCTD+
Sbjct: 1   MLSTPFFFNFHPHQYGTHIEDFSSQLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDE 60

Query: 61  TPAMCNEFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSAEEFKMLNEVDKNRL 120
           TPAM N+ +TYE   DDDDDD+EN+EEVESKPIGFMTESSASIDSAEEFKMLNEV+KNRL
Sbjct: 61  TPAMRNKVQTYE---DDDDDDDENEEEVESKPIGFMTESSASIDSAEEFKMLNEVEKNRL 120

Query: 121 FWETCLAS 129
           FWETCLAS
Sbjct: 121 FWETCLAS 125

[Close]

BLAST of CmaCh17G011390 vs. ExPASy TrEMBL
Match: A0A0A0K519 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390190 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.6e-33
Identity = 92/142 (64.79%), Postives = 102/142 (71.83%), Query Frame = 0


Query: 1   MLSTPFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAES 60
           MLS+P FFNF+PH F    GNHIED SS+ LFEATGDSE D      SS VS EFNDAES
Sbjct: 1   MLSSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEVDL---QSSSPVSTEFNDAES 60

Query: 61  CTDDTP--AMCN-------EFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSA- 120
           CTDDT    +CN       E    ENDDDD D++EE +E VESK IGF  +S+ASIDS  
Sbjct: 61  CTDDTDRIMLCNNEDDEDEEEMGVENDDDDGDEEEEEEEVVESKAIGFSIKSNASIDSTK 120

Query: 121 EEFKMLNEVDKNRLFWETCLAS 129
           +EFKMLNEVDKNRLFWETCLAS
Sbjct: 121 DEFKMLNEVDKNRLFWETCLAS 139

[Close]

BLAST of CmaCh17G011390 vs. ExPASy TrEMBL
Match: A0A1S3BRI2 (glutamic acid-rich protein OS=Cucumis melo OX=3656 GN=LOC103492721 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.3e-32
Identity = 96/150 (64.00%), Postives = 106/150 (70.67%), Query Frame = 0


Query: 1   MLST-PFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVG--HGSSTVSVEFND 60
           MLST P FFNF+PH F    GNHIED SS+ LFEATGDSEADS V     SS  + EFND
Sbjct: 1   MLSTSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEADSSVDLESSSSASTTEFND 60

Query: 61  AESCTDDTPAM-CNE------------FKTYENDDDD-DDDDEENDEEVESKPIGFMTES 120
           AESCTDDTP M CN              +  ENDDDD DD+DEE +E VESK IGF  +S
Sbjct: 61  AESCTDDTPTMLCNNENEDDDDDDGDGEEMVENDDDDHDDEDEEEEEVVESKAIGFSIKS 120

Query: 121 SASIDSA-EEFKMLNEVDKNRLFWETCLAS 129
           +ASIDS  ++FKMLNEVDKNRLFWETCLAS
Sbjct: 121 NASIDSTKDDFKMLNEVDKNRLFWETCLAS 150

[Close]

BLAST of CmaCh17G011390 vs. ExPASy TrEMBL
Match: A0A5A7UVG0 (Glutamic acid-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00160 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.9e-32
Identity = 93/147 (63.27%), Postives = 104/147 (70.75%), Query Frame = 0


Query: 1   MLST-PFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVG--HGSSTVSVEFND 60
           MLST P FFNF+PH F    GNHIED SS+ LFEATGDSEADS V     SS  + EFND
Sbjct: 1   MLSTSPLFFNFYPHHFVHNQGNHIEDISSYFLFEATGDSEADSSVDLESSSSASTTEFND 60

Query: 61  AESCTDDTPAM-CNEFKTYEND----------DDDDDDDEENDEEVESKPIGFMTESSAS 120
           AESCTDDTP M CN     ++D          DDDD D+EE +E VESK IGF  +S+AS
Sbjct: 61  AESCTDDTPTMLCNNENEDDDDDGDGEEMVENDDDDHDNEEEEEVVESKAIGFSIKSNAS 120

Query: 121 IDSA-EEFKMLNEVDKNRLFWETCLAS 129
           IDS  ++FKMLNEVDKNRLFWETCLAS
Sbjct: 121 IDSTKDDFKMLNEVDKNRLFWETCLAS 147

[Close]

BLAST of CmaCh17G011390 vs. NCBI nr
Match: XP_022991734.1 (uncharacterized protein LOC111488264 [Cucurbita maxima])

HSP 1 Score: 253.8 bits (647), Expect = 7.7e-64
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD 60
           MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD
Sbjct: 1   MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD 60

Query: 61  TPAMCNEFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSAEEFKMLNEVDKNRL 120
           TPAMCNEFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSAEEFKMLNEVDKNRL
Sbjct: 61  TPAMCNEFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSAEEFKMLNEVDKNRL 120

Query: 121 FWETCLAS 129
           FWETCLAS
Sbjct: 121 FWETCLAS 128

[Close]

BLAST of CmaCh17G011390 vs. NCBI nr
Match: KAG6575870.1 (hypothetical protein SDJN03_26509, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014404.1 hypothetical protein SDJN02_24581, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234.2 bits (596), Expect = 6.3e-58
Identity = 121/128 (94.53%), Postives = 125/128 (97.66%), Query Frame = 0


Query: 1   MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD 60
           MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD
Sbjct: 1   MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD 60

Query: 61  TPAMCNEFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSAEEFKMLNEVDKNRL 120
           TPAM N+ +TYENDDDDDDDD EN+EEVESKPIGFMTESSASIDSAEEFKMLNEV+KNRL
Sbjct: 61  TPAMRNKVQTYENDDDDDDDD-ENEEEVESKPIGFMTESSASIDSAEEFKMLNEVEKNRL 120

Query: 121 FWETCLAS 129
           FWETCLAS
Sbjct: 121 FWETCLAS 127

[Close]

BLAST of CmaCh17G011390 vs. NCBI nr
Match: XP_023522205.1 (uncharacterized protein LOC111786091 [Cucurbita pepo subsp. pepo] >XP_023548487.1 uncharacterized protein LOC111807136 [Cucurbita pepo subsp. pepo] >XP_023549405.1 uncharacterized protein LOC111807769 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.1 bits (575), Expect = 1.7e-55
Identity = 117/128 (91.41%), Postives = 119/128 (92.97%), Query Frame = 0


Query: 1   MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD 60
           MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD
Sbjct: 1   MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD 60

Query: 61  TPAMCNEFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSAEEFKMLNEVDKNRL 120
           TPAM NE + YENDDDD     ENDEEVESKPIGFMTESS SIDSAEEFKMLNEV+KNRL
Sbjct: 61  TPAMRNEVQMYENDDDD-----ENDEEVESKPIGFMTESSGSIDSAEEFKMLNEVEKNRL 120

Query: 121 FWETCLAS 129
           FWETCLAS
Sbjct: 121 FWETCLAS 123

[Close]

BLAST of CmaCh17G011390 vs. NCBI nr
Match: XP_022953969.1 (uncharacterized protein LOC111456367 [Cucurbita moschata])

HSP 1 Score: 220.7 bits (561), Expect = 7.2e-54
Identity = 114/128 (89.06%), Postives = 121/128 (94.53%), Query Frame = 0


Query: 1   MLSTPFFFNFHPHQFGNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDD 60
           MLSTPFFFNFHPHQ+G HIEDFSS LLFEATGDSEADSLVGHGSSTVSVEFNDAESCTD+
Sbjct: 1   MLSTPFFFNFHPHQYGTHIEDFSSQLLFEATGDSEADSLVGHGSSTVSVEFNDAESCTDE 60

Query: 61  TPAMCNEFKTYENDDDDDDDDEENDEEVESKPIGFMTESSASIDSAEEFKMLNEVDKNRL 120
           TPAM N+ +TYE   DDDDDD+EN+EEVESKPIGFMTESSASIDSAEEFKMLNEV+KNRL
Sbjct: 61  TPAMRNKVQTYE---DDDDDDDENEEEVESKPIGFMTESSASIDSAEEFKMLNEVEKNRL 120

Query: 121 FWETCLAS 129
           FWETCLAS
Sbjct: 121 FWETCLAS 125

[Close]

BLAST of CmaCh17G011390 vs. NCBI nr
Match: XP_038896353.1 (uncharacterized protein LOC120084618 [Benincasa hispida])

HSP 1 Score: 166.4 bits (420), Expect = 1.6e-37
Identity = 94/135 (69.63%), Postives = 105/135 (77.78%), Query Frame = 0


Query: 1   MLSTPFFFNFHPHQF----GNHIEDFSSHLLFEATGDSEADSLVGHGSSTVSVEFNDAES 60
           MLSTP FFNF+PH F    GNHIED SS+ L EATGDSE DS V  G S  S EFNDAES
Sbjct: 1   MLSTPLFFNFYPHPFAHKQGNHIEDISSYFLLEATGDSEIDSSVDLGGSVASTEFNDAES 60

Query: 61  CTDDTPAMC-NEFKTYENDDDDDDDDEEN--DEEVESKPIGFMTESSASIDSAEEFKMLN 120
           CTDDTP +C NEF  YE +D+D+++  EN  DE VESK IGF T+S+ASIDS +EFKMLN
Sbjct: 61  CTDDTPTICTNEFGKYEYEDEDEEEMVENDYDEVVESKAIGFTTKSNASIDSTKEFKMLN 120

Query: 121 EVDKNRLFWETCLAS 129
           EVDKNRLFWETCLAS
Sbjct: 121 EVDKNRLFWETCLAS 135

[Close]

BLAST of CmaCh17G011390 vs. TAIR 10
Match: AT2G47950.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62990.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 3.3e-04
Identity = 42/130 (32.31%), Postives = 66/130 (50.77%), Query Frame = 0


Query: 17  NHIEDFSSHLLFEATGDSEA------------DSLVGHGSSTVSVEFNDAESCTDDTPAM 76
           N++ D S  LL EA+ DSEA            D  +GH SS+ S   +   SC     ++
Sbjct: 5   NNVFDVSPFLLLEASADSEAGHDSVDDDKCVKDYDLGHESSSAS---SCETSCVSQRTSL 64

Query: 77  C-----NEFKTYENDDDDDDDDEENDEEVESK-PIGFMTESSASIDSAEEFKMLNEVDKN 129
                 ++   +E  D  D++DE+ + EV S    G     + ++DSA    +++E+D+N
Sbjct: 65  LGFDLQDDTVNHEERDAGDEEDEDGEGEVNSYIRCGRSQRENLAVDSA---AVVSEMDQN 124

The following BLAST results are available for this feature:

BLAST of CmaCh17G011390 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G011390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JVN0	3.7e-64	100.00	uncharacterized protein LOC111488264 OS=Cucurbita maxima OX=3661 GN=LOC111488264...	[more]
A0A6J1GRH1	3.5e-54	89.06	uncharacterized protein LOC111456367 OS=Cucurbita moschata OX=3662 GN=LOC1114563...	[more]
A0A0A0K519	7.6e-33	64.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G390190 PE=4 SV=1	[more]
A0A1S3BRI2	1.3e-32	64.00	glutamic acid-rich protein OS=Cucumis melo OX=3656 GN=LOC103492721 PE=4 SV=1	[more]
A0A5A7UVG0	4.9e-32	63.27	Glutamic acid-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]

BLAST of CmaCh17G011390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991734.1	7.7e-64	100.00	uncharacterized protein LOC111488264 [Cucurbita maxima]	[more]
KAG6575870.1	6.3e-58	94.53	hypothetical protein SDJN03_26509, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023522205.1	1.7e-55	91.41	uncharacterized protein LOC111786091 [Cucurbita pepo subsp. pepo] >XP_023548487....	[more]
XP_022953969.1	7.2e-54	89.06	uncharacterized protein LOC111456367 [Cucurbita moschata]	[more]
XP_038896353.1	1.6e-37	69.63	uncharacterized protein LOC120084618 [Benincasa hispida]	[more]

BLAST of CmaCh17G011390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47950.1	3.3e-04	32.31	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..88
None	No IPR available	PANTHER	PTHR35726	GLUTAMIC ACID-RICH PROTEIN-LIKE	coord: 17..128
None	No IPR available	PANTHER	PTHR35726:SF4	GLUTAMIC ACID-RICH PROTEIN-LIKE	coord: 17..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G011390.1	CmaCh17G011390.1	mRNA