CmaCh17G011110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G011110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	nuclear transcription factor Y subunit B-1
Location	Cma_Chr17: 7785153 .. 7785623 (-)
RNA-Seq Expression	CmaCh17G011110
Synteny	CmaCh17G011110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGACAACACACCCATGCCAGAGAGACTAGTAGAATTCAAGTACGATTTCACCACCGGCGGCGGCGGCGGAGTTGGTGGTAGTACTGGTGGGTCGAGCGAGGAAGCTGGTAGCGGCATAGGCGGGTTCGTAAAAGAGCAAGATCGACTACTTCCAATAGCAAACGTAGGGAGAATCATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACCGTCAATGGCGATGATATTTGCTGTGCCTTGGCCACGCTTGGGTTCGATGATTATGCTGAGCCTTTGAGGAGGTATTTGATTAGGTATAGAGAAATTGAAGGGGAAAGAGCTCAACAAAATAAGGGTTGTTGCAATAACAATGCTCATGATGCATGA

mRNA sequence

ATGGATGACAACACACCCATGCCAGAGAGACTAGTAGAATTCAAGTACGATTTCACCACCGGCGGCGGCGGCGGAGTTGGTGGTAGTACTGGTGGGTCGAGCGAGGAAGCTGGTAGCGGCATAGGCGGGTTCGTAAAAGAGCAAGATCGACTACTTCCAATAGCAAACGTAGGGAGAATCATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACCGTCAATGGCGATGATATTTGCTGTGCCTTGGCCACGCTTGGGTTCGATGATTATGCTGAGCCTTTGAGGAGGTATTTGATTAGGTATAGAGAAATTGAAGGGGAAAGAGCTCAACAAAATAAGGGTTGTTGCAATAACAATGCTCATGATGCATGA

Coding sequence (CDS)

ATGGATGACAACACACCCATGCCAGAGAGACTAGTAGAATTCAAGTACGATTTCACCACCGGCGGCGGCGGCGGAGTTGGTGGTAGTACTGGTGGGTCGAGCGAGGAAGCTGGTAGCGGCATAGGCGGGTTCGTAAAAGAGCAAGATCGACTACTTCCAATAGCAAACGTAGGGAGAATCATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGCGTGTCGGAGTTCATCAGCTTCGTCACGGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACCGTCAATGGCGATGATATTTGCTGTGCCTTGGCCACGCTTGGGTTCGATGATTATGCTGAGCCTTTGAGGAGGTATTTGATTAGGTATAGAGAAATTGAAGGGGAAAGAGCTCAACAAAATAAGGGTTGTTGCAATAACAATGCTCATGATGCATGA

Protein sequence

MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHDA

Homology

[Close]

BLAST of CmaCh17G011110 vs. ExPASy Swiss-Prot
Match: O82248 (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NFYB5 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.8e-42
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 45  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 104
           VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRK
Sbjct: 49  VKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRK 108

Query: 105 TVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGER 142
           TVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 109 TVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

[Close]

BLAST of CmaCh17G011110 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.1e-38
Identity = 80/115 (69.57%), Postives = 93/115 (80.87%), Query Frame = 0


Query: 27  GGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEF 86
           GG   G+++   S +    +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEF
Sbjct: 9   GGGQNGNNQNGQSSLS--PREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEF 68

Query: 87  ISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGER 142
           ISFVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+REIEGER
Sbjct: 69  ISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 121

[Close]

BLAST of CmaCh17G011110 vs. ExPASy Swiss-Prot
Match: Q9SLG0 (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 5.4e-38
Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 34  SEEAGSG--IGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNN 153
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+     K    +
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGS 125

[Close]

BLAST of CmaCh17G011110 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 9.2e-38
Identity = 79/123 (64.23%), Postives = 96/123 (78.05%), Query Frame = 0


Query: 21  GGGGG---VGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKE 80
           GGGGG    G   GG     G G GG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKE
Sbjct: 9   GGGGGSHESGSPRGGGGGGGGGGGGGGVREQDRFLPIANISRIMKKAIPANGKIAKDAKE 68

Query: 81  TMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREI 140
           T+QECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YRE+
Sbjct: 69  TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREM 128

[Close]

BLAST of CmaCh17G011110 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.6e-37
Identity = 82/121 (67.77%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 22  GGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQE 81
           GGGG G S G      G G     KEQDR LPIANV RIMK+ LP NAKISKE+KET+QE
Sbjct: 33  GGGGCGSSAGYVVYGGGGGGDSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQE 92

Query: 82  CVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGER 141
           CVSEFISFVTGEASDKC +EKRKT+NGDD+  A+ TLGF+ Y  PL+ YL RYRE EGE+
Sbjct: 93  CVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEK 152

Query: 142 A 143
           A
Sbjct: 153 A 153

[Close]

BLAST of CmaCh17G011110 vs. ExPASy TrEMBL
Match: A0A6J1JM11 (nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111488106 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.0e-83
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHDA 157
           DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHDA
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHDA 156

[Close]

BLAST of CmaCh17G011110 vs. ExPASy TrEMBL
Match: A0A6J1GM85 (nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN=LOC111455784 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.4e-81
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MDDNTPMPERLVEFKYDFTTGGG-GGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR 60
           MDDNTPMPERLVEFKYDFTTGGG GGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGSGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR 60

Query: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120
           IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG
Sbjct: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120

Query: 121 FDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHDA 157
           FDDYAEPLRRYLIRYREIEGERAQQNKGCCNNN HDA
Sbjct: 121 FDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNTHDA 157

[Close]

BLAST of CmaCh17G011110 vs. ExPASy TrEMBL
Match: A0A1S3BT19 (nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC103492848 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.7e-74
Identity = 140/152 (92.11%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           MD+NT MPER VEFKYDFT GG  GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNN 153
           DDYAEPLRRYL+RYR++EGERAQQNKGCCNNN
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNN 152

[Close]

BLAST of CmaCh17G011110 vs. ExPASy TrEMBL
Match: A0A0A0K954 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G395250 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 8.3e-74
Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 0


Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           MD+NT MPER +EFKYDFT GG  GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERSIEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNN 153
           DDYAEPLRRYL+RYR++EGERAQQNKGCCNN+
Sbjct: 121 DDYAEPLRRYLVRYRDMEGERAQQNKGCCNNS 152

[Close]

BLAST of CmaCh17G011110 vs. ExPASy TrEMBL
Match: A0A5A7VLD2 (Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002260 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.9e-72
Identity = 136/146 (93.15%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 7   MPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILP 66
           MPER VEFKYDFT GG  GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRIMKQILP
Sbjct: 1   MPERSVEFKYDFTGGGSSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRIMKQILP 60

Query: 67  PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP 126
           PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP
Sbjct: 61  PNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEP 120

Query: 127 LRRYLIRYREIEGERAQQNKGCCNNN 153
           LRRYL+RYR++EGERAQQNKGCCNNN
Sbjct: 121 LRRYLVRYRDMEGERAQQNKGCCNNN 146

[Close]

BLAST of CmaCh17G011110 vs. NCBI nr
Match: XP_022991512.1 (nuclear transcription factor Y subunit B-1 [Cucurbita maxima])

HSP 1 Score: 318.2 bits (814), Expect = 4.1e-83
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHDA 157
           DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHDA
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHDA 156

[Close]

BLAST of CmaCh17G011110 vs. NCBI nr
Match: XP_023549145.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 316.6 bits (810), Expect = 1.2e-82
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0


Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHDA 157
           DDYAEPLRRYLIRYREIEGERAQQNKGCCNNN HDA
Sbjct: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNTHDA 156

[Close]

BLAST of CmaCh17G011110 vs. NCBI nr
Match: XP_022953161.1 (nuclear transcription factor Y subunit B-1-like [Cucurbita moschata])

HSP 1 Score: 312.0 bits (798), Expect = 2.9e-81
Identity = 155/157 (98.73%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MDDNTPMPERLVEFKYDFTTGGG-GGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR 60
           MDDNTPMPERLVEFKYDFTTGGG GGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGSGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGR 60

Query: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120
           IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG
Sbjct: 61  IMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLG 120

Query: 121 FDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHDA 157
           FDDYAEPLRRYLIRYREIEGERAQQNKGCCNNN HDA
Sbjct: 121 FDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNTHDA 157

[Close]

BLAST of CmaCh17G011110 vs. NCBI nr
Match: KAG6575846.1 (Nuclear transcription factor Y subunit B-5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 311.2 bits (796), Expect = 5.0e-81
Identity = 155/159 (97.48%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MDDNTPMPERLVEFKYDFTT---GGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANV 60
           MDDNTPMPERLVEFKYDFTT   GGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANV
Sbjct: 1   MDDNTPMPERLVEFKYDFTTGGGGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANV 60

Query: 61  GRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALAT 120
           GRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALAT
Sbjct: 61  GRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALAT 120

Query: 121 LGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHDA 157
           LGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNNN HDA
Sbjct: 121 LGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNNNTHDA 159

[Close]

BLAST of CmaCh17G011110 vs. NCBI nr
Match: XP_038876756.1 (nuclear transcription factor Y subunit B-1-like [Benincasa hispida])

HSP 1 Score: 298.5 bits (763), Expect = 3.3e-77
Identity = 145/155 (93.55%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MDDNTPMPERLVEFKYDFTTGGGGGVGGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRI 60
           MD+NT MPERLVEFKYDFT GGG GVGGSTGGSSEEAG+G+GG VKEQDRLLPIANVGRI
Sbjct: 1   MDENTGMPERLVEFKYDFTGGGGSGVGGSTGGSSEEAGNGVGGVVKEQDRLLPIANVGRI 60

Query: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120
           MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF
Sbjct: 61  MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGF 120

Query: 121 DDYAEPLRRYLIRYREIEGERAQQNKGCCNNNAHD 156
           DDYAEPLRRYL+RYRE+EGERAQQNKGCCNNN HD
Sbjct: 121 DDYAEPLRRYLVRYREMEGERAQQNKGCCNNNNHD 155

[Close]

BLAST of CmaCh17G011110 vs. TAIR 10
Match: AT2G47810.1 (nuclear factor Y, subunit B5 )

HSP 1 Score: 172.9 bits (437), Expect = 2.0e-43
Identity = 83/97 (85.57%), Postives = 89/97 (91.75%), Query Frame = 0


Query: 45  VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRK 104
           VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRK
Sbjct: 49  VKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRK 108

Query: 105 TVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGER 142
           TVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+
Sbjct: 109 TVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEK 145

[Close]

BLAST of CmaCh17G011110 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 159.1 bits (401), Expect = 2.9e-39
Identity = 80/115 (69.57%), Postives = 93/115 (80.87%), Query Frame = 0


Query: 27  GGSTGGSSEEAGSGIGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEF 86
           GG   G+++   S +    +EQDR LPIANV RIMK+ LP NAKISK+AKETMQECVSEF
Sbjct: 9   GGGQNGNNQNGQSSLS--PREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEF 68

Query: 87  ISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGER 142
           ISFVTGEASDKC KEKRKT+NGDD+  A+ TLGF+DY EPL+ YL R+REIEGER
Sbjct: 69  ISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGER 121

[Close]

BLAST of CmaCh17G011110 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 158.7 bits (400), Expect = 3.8e-39
Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 34  SEEAGSG--IGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNN 153
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+     K    +
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGS 125

[Close]

BLAST of CmaCh17G011110 vs. TAIR 10
Match: AT2G38880.3 (nuclear factor Y, subunit B1 )

HSP 1 Score: 158.7 bits (400), Expect = 3.8e-39
Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 34  SEEAGSG--IGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNN 153
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+     K    +
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGS 125

[Close]

BLAST of CmaCh17G011110 vs. TAIR 10
Match: AT2G38880.1 (nuclear factor Y, subunit B1 )

HSP 1 Score: 158.7 bits (400), Expect = 3.8e-39
Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 34  SEEAGSG--IGGFVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVT 93
           S  AG G   GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T
Sbjct: 6   SSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFIT 65

Query: 94  GEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLIRYREIEGERAQQNKGCCNN 153
            EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYRE+EG+     K    +
Sbjct: 66  SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGS 125

The following BLAST results are available for this feature:

BLAST of CmaCh17G011110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82248	2.8e-42	85.57	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	4.1e-38	69.57	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9SLG0	5.4e-38	65.29	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q60EQ4	9.2e-38	64.23	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q0J7P4	1.6e-37	67.77	Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=3...	[more]

BLAST of CmaCh17G011110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JM11	2.0e-83	100.00	nuclear transcription factor Y subunit B-1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GM85	1.4e-81	98.73	nuclear transcription factor Y subunit B-1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3BT19	1.7e-74	92.11	nuclear transcription factor Y subunit B-1 OS=Cucumis melo OX=3656 GN=LOC1034928...	[more]
A0A0A0K954	8.3e-74	90.79	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G3952...	[more]
A0A5A7VLD2	5.9e-72	93.15	Nuclear transcription factor Y subunit B-1 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of CmaCh17G011110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991512.1	4.1e-83	100.00	nuclear transcription factor Y subunit B-1 [Cucurbita maxima]	[more]
XP_023549145.1	1.2e-82	99.36	nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022953161.1	2.9e-81	98.73	nuclear transcription factor Y subunit B-1-like [Cucurbita moschata]	[more]
KAG6575846.1	5.0e-81	97.48	Nuclear transcription factor Y subunit B-5, partial [Cucurbita argyrosperma subs...	[more]
XP_038876756.1	3.3e-77	93.55	nuclear transcription factor Y subunit B-1-like [Benincasa hispida]	[more]

BLAST of CmaCh17G011110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47810.1	2.0e-43	85.57	nuclear factor Y, subunit B5	[more]
AT5G47640.1	2.9e-39	69.57	nuclear factor Y, subunit B2	[more]
AT2G38880.2	3.8e-39	65.29	nuclear factor Y, subunit B1	[more]
AT2G38880.3	3.8e-39	65.29	nuclear factor Y, subunit B1	[more]
AT2G38880.1	3.8e-39	65.29	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 117..135 score: 33.97 coord: 79..97 score: 51.32 coord: 98..116 score: 34.21
None	No IPR available	PANTHER	PTHR11064:SF106	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5	coord: 36..152
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 51..115 e-value: 6.4E-27 score: 93.6
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 43..155 e-value: 1.0E-43 score: 150.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 48..148
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 36..152
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 82..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G011110.1	CmaCh17G011110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding