CmaCh17G009500 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh17G009500
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionthylakoid lumenal 19 kDa protein, chloroplastic-like
LocationCma_Chr17: 7074141 .. 7075304 (+)
RNA-Seq ExpressionCmaCh17G009500
SyntenyCmaCh17G009500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAAAATGGAAAAATAATGGATAAGGAGAAAATCCTACGCAGACGAGATAAACCAGAAATCCAAAATCCACGAAAATCGCTCACTATGGCCACAGCAATCTCGCCATTGGCGTTCTTCTCCGCCGCCGCTGCATCCACCGGAACAACCGCCCCAAAACTGCCGCAAAAGCCCCAAATTATCCCCATCCTTCAATCCAAACCCTCACTCTCCTCATTGACCGCCGCGTGTAGCGCCATCGCCATAGCCGCGATCGTGAGCACTAGTCCACCGTCACTGGCCGACGCCGGCCCCGCATTCAACGTCTACTACGGTACCGCTGCCAGCGCCGCCAACTACGGCGGCCTTGGCGGCAACGCCGACAAGAAAGACTCGGCGGAATACGTCTACGACGTGCCGGACGGCTGGAAGGAGCGACTAGTATCAAAAGTCGAAAAAGGTATTTCAAAATCGCCATGGAAATTCCTAAATTAAAGAGCTCGAATAGTTCAATTCATTTCGAAAATCAATTTTAGCTTCTTAATTCCGCAGGTACGAACGGAACCGATAGCGAATTTTACAATCCGAAGAAACGATCGGAGAAAGAATACCTAACTTTCCTGGCAGGAATCCGGCAATTAGGGCCAAAAGATGTGATTCTAAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTCGGCGGAGGAGAAGAAGGATGAGAATGGACAGATTTATTACGAGTATGAGATCGATAGCGCCGGAACTCACAGTTTGATATCGGTGACCTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCACCGACGCCGGAGTGGAATCGGGATCAGGATATGCTTCGGCATGTTCATGAATCCTTTAAGACGATCGGATCATATTAAGCTTTGGTCGCAACGCCGGAGATTTGATCGGAGAGAGGTTTGTGTTGTCGCTATGTACGAATTGGTTGTTACACGCTTATTCTTAAATGATGGAAATCTGTAGCTGTGTACGAATTAGCTCGATCATAAACAAAAAGTAATGAACACTGAACACTGCAAGTCATTTTGAAAAAATAAAAAATAAAGTCACTCAAGATTATACTCAAACTAAACAATATCATTCTTGGTGATAAAAATGGACATGTTCATCATCCAGC

mRNA sequence

AGGAAAATGGAAAAATAATGGATAAGGAGAAAATCCTACGCAGACGAGATAAACCAGAAATCCAAAATCCACGAAAATCGCTCACTATGGCCACAGCAATCTCGCCATTGGCGTTCTTCTCCGCCGCCGCTGCATCCACCGGAACAACCGCCCCAAAACTGCCGCAAAAGCCCCAAATTATCCCCATCCTTCAATCCAAACCCTCACTCTCCTCATTGACCGCCGCGTGTAGCGCCATCGCCATAGCCGCGATCGTGAGCACTAGTCCACCGTCACTGGCCGACGCCGGCCCCGCATTCAACGTCTACTACGGTACCGCTGCCAGCGCCGCCAACTACGGCGGCCTTGGCGGCAACGCCGACAAGAAAGACTCGGCGGAATACGTCTACGACGTGCCGGACGGCTGGAAGGAGCGACTAGTATCAAAAGTCGAAAAAGGTACGAACGGAACCGATAGCGAATTTTACAATCCGAAGAAACGATCGGAGAAAGAATACCTAACTTTCCTGGCAGGAATCCGGCAATTAGGGCCAAAAGATGTGATTCTAAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTCGGCGGAGGAGAAGAAGGATGAGAATGGACAGATTTATTACGAGTATGAGATCGATAGCGCCGGAACTCACAGTTTGATATCGGTGACCTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCACCGACGCCGGAGTGGAATCGGGATCAGGATATGCTTCGGCATGTTCATGAATCCTTTAAGACGATCGGATCATATTAAGCTTTGGTCGCAACGCCGGAGATTTGATCGGAGAGAGGTTTGTGTTGTCGCTATGTACGAATTGGTTGTTACACGCTTATTCTTAAATGATGGAAATCTGTAGCTGTGTACGAATTAGCTCGATCATAAACAAAAAGTAATGAACACTGAACACTGCAAGTCATTTTGAAAAAATAAAAAATAAAGTCACTCAAGATTATACTCAAACTAAACAATATCATTCTTGGTGATAAAAATGGACATGTTCATCATCCAGC

Coding sequence (CDS)

ATGGATAAGGAGAAAATCCTACGCAGACGAGATAAACCAGAAATCCAAAATCCACGAAAATCGCTCACTATGGCCACAGCAATCTCGCCATTGGCGTTCTTCTCCGCCGCCGCTGCATCCACCGGAACAACCGCCCCAAAACTGCCGCAAAAGCCCCAAATTATCCCCATCCTTCAATCCAAACCCTCACTCTCCTCATTGACCGCCGCGTGTAGCGCCATCGCCATAGCCGCGATCGTGAGCACTAGTCCACCGTCACTGGCCGACGCCGGCCCCGCATTCAACGTCTACTACGGTACCGCTGCCAGCGCCGCCAACTACGGCGGCCTTGGCGGCAACGCCGACAAGAAAGACTCGGCGGAATACGTCTACGACGTGCCGGACGGCTGGAAGGAGCGACTAGTATCAAAAGTCGAAAAAGGTACGAACGGAACCGATAGCGAATTTTACAATCCGAAGAAACGATCGGAGAAAGAATACCTAACTTTCCTGGCAGGAATCCGGCAATTAGGGCCAAAAGATGTGATTCTAAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTCGGCGGAGGAGAAGAAGGATGAGAATGGACAGATTTATTACGAGTATGAGATCGATAGCGCCGGAACTCACAGTTTGATATCGGTGACCTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCACCGACGCCGGAGTGGAATCGGGATCAGGATATGCTTCGGCATGTTCATGAATCCTTTAAGACGATCGGATCATATTAA

Protein sequence

MDKEKILRRRDKPEIQNPRKSLTMATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQSKPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY
Homology
BLAST of CmaCh17G009500 vs. ExPASy Swiss-Prot
Match: P82658 (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g63540 PE=1 SV=2)

HSP 1 Score: 280.8 bits (717), Expect = 1.6e-74
Identity = 148/241 (61.41%), Postives = 177/241 (73.44%), Query Frame = 0

Query: 24  MATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQSKPSLSSLTAACSAIAIAAIVSTS 83
           MAT I     F A+   + T  P       I+P   +    +SL AA +A ++  +V   
Sbjct: 1   MATKI-----FLASPVISATRTP-------IVPKAIASRLGTSLAAALAATSVLTMVPVL 60

Query: 84  PPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVSKVEKGTN 143
            P+  +    + +YYGTAASAANYGG GGN+D+K SAEYVYDVP+GWKERLVSKVEKGTN
Sbjct: 61  -PAAGEGNQTYKIYYGTAASAANYGGYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTN 120

Query: 144 GTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKK 203
           GTDSEFYNPKK++EKEYLTFLAG RQL P+DVILNNLALSDV LQD IA A+   +EE+K
Sbjct: 121 GTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSDVELQDLIAGADKVVSEERK 180

Query: 204 DENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIG 263
           DE GQ+YY YEID  G HSLI+VTC+KN+LYAHFVNAP PEWNRD D L H+ +SFKT+ 
Sbjct: 181 DETGQVYYLYEIDGVGKHSLITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTVS 228

Query: 264 S 265
           S
Sbjct: 241 S 228

BLAST of CmaCh17G009500 vs. ExPASy TrEMBL
Match: A0A6J1JN94 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488417 PE=4 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 7.1e-142
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0

Query: 1   MDKEKILRRRDKPEIQNPRKSLTMATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQS 60
           MDKEKILRRRDKPEIQNPRKSLTMATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQS
Sbjct: 1   MDKEKILRRRDKPEIQNPRKSLTMATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQS 60

Query: 61  KPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSA 120
           KPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSA
Sbjct: 61  KPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSA 120

Query: 121 EYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNL 180
           EYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNL
Sbjct: 121 EYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNL 180

Query: 181 ALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNA 240
           ALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNA
Sbjct: 181 ALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNA 240

Query: 241 PTPEWNRDQDMLRHVHESFKTIGSY 266
           PTPEWNRDQDMLRHVHESFKTIGSY
Sbjct: 241 PTPEWNRDQDMLRHVHESFKTIGSY 265

BLAST of CmaCh17G009500 vs. ExPASy TrEMBL
Match: A0A5D3CG07 (Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00930 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 7.1e-110
Identity = 214/251 (85.26%), Postives = 228/251 (90.84%), Query Frame = 0

Query: 24  MATAISPLAFFSAAAASTGTTAPKLPQ-----KPQIIPILQSKPSLSSLTA----ACSAI 83
           MATAI+PLAF ++ AASTGTTAPK PQ     KPQ IPILQSK  LS  TA    A +AI
Sbjct: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQ-IPILQSKSPLSISTAPISIAATAI 60

Query: 84  AIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERL 143
           A+AAI++T+PPSLAD G AFNVYYGTAASAANYGGLGGNA+KKD+AEYVYDVP+GWKERL
Sbjct: 61  AVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERL 120

Query: 144 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 203
           VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA
Sbjct: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180

Query: 204 ESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 263
           ESF A+EKKDENGQ+YY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH
Sbjct: 181 ESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240

Query: 264 VHESFKTIGSY 266
           VHESFKT+GSY
Sbjct: 241 VHESFKTVGSY 250

BLAST of CmaCh17G009500 vs. ExPASy TrEMBL
Match: A0A1S3CES2 (thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499916 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 7.1e-110
Identity = 214/251 (85.26%), Postives = 228/251 (90.84%), Query Frame = 0

Query: 24  MATAISPLAFFSAAAASTGTTAPKLPQ-----KPQIIPILQSKPSLSSLTA----ACSAI 83
           MATAI+PLAF ++ AASTGTTAPK PQ     KPQ IPILQSK  LS  TA    A +AI
Sbjct: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQ-IPILQSKSPLSISTAPISIAATAI 60

Query: 84  AIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERL 143
           A+AAI++T+PPSLAD G AFNVYYGTAASAANYGGLGGNA+KKD+AEYVYDVP+GWKERL
Sbjct: 61  AVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERL 120

Query: 144 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 203
           VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA
Sbjct: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180

Query: 204 ESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 263
           ESF A+EKKDENGQ+YY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH
Sbjct: 181 ESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240

Query: 264 VHESFKTIGSY 266
           VHESFKT+GSY
Sbjct: 241 VHESFKTVGSY 250

BLAST of CmaCh17G009500 vs. ExPASy TrEMBL
Match: A0A6J1H7M1 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460820 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 3.9e-108
Identity = 212/249 (85.14%), Postives = 223/249 (89.56%), Query Frame = 0

Query: 24  MATAISPLAFFSA-AAASTGTTAPKLPQKP----QIIPILQSKPS--LSSLTAACSAIAI 83
           MATAISPLAFFSA AAA+TG   PK  Q P     +IP+LQS PS  LSSL+A  SAIA+
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLSAPISAIAV 60

Query: 84  AAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVS 143
           AAI+ST+PPSLADAG AFNVYYGTAASAANYGG GGNA KKDSAEY+YDVP+GWKERLVS
Sbjct: 61  AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120

Query: 144 KVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAES 203
           KVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASAE 
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180

Query: 204 FSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVH 263
            SAEEKKDENGQIYY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHVH
Sbjct: 181 ISAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240

Query: 264 ESFKTIGSY 266
           ESFKT+GSY
Sbjct: 241 ESFKTVGSY 249

BLAST of CmaCh17G009500 vs. ExPASy TrEMBL
Match: A0A0A0K624 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 8.7e-108
Identity = 211/250 (84.40%), Postives = 226/250 (90.40%), Query Frame = 0

Query: 24  MATAISPLAFFSAAAASTGTTAPKLPQ-----KPQIIPILQSKPSLSS---LTAACSAIA 83
           MATAI+PLAF +    STGTTAPK PQ     KPQ IPILQSKP LSS   ++ A +AIA
Sbjct: 1   MATAIAPLAFLT----STGTTAPKPPQASSLPKPQ-IPILQSKPPLSSTAPISIAATAIA 60

Query: 84  IAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLV 143
           +AAI+ST+ PSLAD G AFNVYYGTAASAANYGGLGGNA+KKD+AEY+YDVP+GWKERLV
Sbjct: 61  VAAILSTATPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYIYDVPEGWKERLV 120

Query: 144 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 203
           SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 204 SFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 263
           SF AEEKKDENGQ+YY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 264 HESFKTIGSY 266
           H+SFKT+GSY
Sbjct: 241 HDSFKTVGSY 245

BLAST of CmaCh17G009500 vs. NCBI nr
Match: XP_022991922.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 513.1 bits (1320), Expect = 1.5e-141
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0

Query: 1   MDKEKILRRRDKPEIQNPRKSLTMATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQS 60
           MDKEKILRRRDKPEIQNPRKSLTMATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQS
Sbjct: 1   MDKEKILRRRDKPEIQNPRKSLTMATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQS 60

Query: 61  KPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSA 120
           KPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSA
Sbjct: 61  KPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSA 120

Query: 121 EYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNL 180
           EYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNL
Sbjct: 121 EYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNL 180

Query: 181 ALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNA 240
           ALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNA
Sbjct: 181 ALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNA 240

Query: 241 PTPEWNRDQDMLRHVHESFKTIGSY 266
           PTPEWNRDQDMLRHVHESFKTIGSY
Sbjct: 241 PTPEWNRDQDMLRHVHESFKTIGSY 265

BLAST of CmaCh17G009500 vs. NCBI nr
Match: XP_023547955.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 454.1 bits (1167), Expect = 8.1e-124
Identity = 238/247 (96.36%), Postives = 239/247 (96.76%), Query Frame = 0

Query: 24  MATAISPLAFFSAAAASTGTTAPKL-----PQKPQIIPILQSKPSLSSLTAACSAIAIAA 83
           MA AISPLAFFSAAAASTGTTAPKL     PQKPQIIPILQSKPSLSSLTAA SAIAIAA
Sbjct: 1   MAAAISPLAFFSAAAASTGTTAPKLPQIPPPQKPQIIPILQSKPSLSSLTAAGSAIAIAA 60

Query: 84  IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVSKV 143
           IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNA+KKDSAEYVYDVPDGWKERLVSKV
Sbjct: 61  IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKV 120

Query: 144 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 203
           EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS
Sbjct: 121 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 180

Query: 204 AEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHES 263
           AEEKKDENGQIYYEYEID AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHES
Sbjct: 181 AEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHES 240

Query: 264 FKTIGSY 266
           FKTIGSY
Sbjct: 241 FKTIGSY 247

BLAST of CmaCh17G009500 vs. NCBI nr
Match: KAG6575683.1 (Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014238.1 Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 446.8 bits (1148), Expect = 1.3e-121
Identity = 233/247 (94.33%), Postives = 236/247 (95.55%), Query Frame = 0

Query: 24  MATAISPLAFFSAAAASTGTTAPKL-----PQKPQIIPILQSKPSLSSLTAACSAIAIAA 83
           MA  ISPLAFFSAAAASTG TAPKL     PQKPQIIP+LQSKPSLSSLTAA SAIAIA 
Sbjct: 1   MAAVISPLAFFSAAAASTGATAPKLPQIPPPQKPQIIPVLQSKPSLSSLTAAGSAIAIAT 60

Query: 84  IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVSKV 143
           IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNA+KKDSAEYVYDVPDGWKERLVSKV
Sbjct: 61  IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKV 120

Query: 144 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 203
           EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS
Sbjct: 121 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 180

Query: 204 AEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHES 263
           AEEKKDENGQIYYEYEID AGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHVHES
Sbjct: 181 AEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRHVHES 240

Query: 264 FKTIGSY 266
           FKTIGSY
Sbjct: 241 FKTIGSY 247

BLAST of CmaCh17G009500 vs. NCBI nr
Match: XP_038896859.1 (thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 417.5 bits (1072), Expect = 8.4e-113
Identity = 218/250 (87.20%), Postives = 229/250 (91.60%), Query Frame = 0

Query: 24  MATAISPLAFFSAAAASTGTTAPKLPQKPQI----IPILQSKPSLSSLTA----ACSAIA 83
           MATAI+PLAFFSAAAASTGTTAPK PQ P +    IPILQSKP LS+ TA    A + IA
Sbjct: 1   MATAITPLAFFSAAAASTGTTAPKPPQTPPLPKPQIPILQSKPPLSTSTAPISIAATTIA 60

Query: 84  IAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLV 143
           +AAI+ST+PPSLAD G AFNVYYGTAASAANYGGLGGNA KKD+AEY+YDVP+GWKERLV
Sbjct: 61  VAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120

Query: 144 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 203
           SKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 204 SFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 263
           SF AEEKKDENGQIYY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 264 HESFKTIGSY 266
           HESFKTIGSY
Sbjct: 241 HESFKTIGSY 250

BLAST of CmaCh17G009500 vs. NCBI nr
Match: XP_008461279.1 (PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis melo] >KAA0058638.1 thylakoid lumenal 19 kDa protein [Cucumis melo var. makuwa] >TYK10445.1 thylakoid lumenal 19 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 406.8 bits (1044), Expect = 1.5e-109
Identity = 214/251 (85.26%), Postives = 228/251 (90.84%), Query Frame = 0

Query: 24  MATAISPLAFFSAAAASTGTTAPKLPQ-----KPQIIPILQSKPSLSSLTA----ACSAI 83
           MATAI+PLAF ++ AASTGTTAPK PQ     KPQ IPILQSK  LS  TA    A +AI
Sbjct: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQ-IPILQSKSPLSISTAPISIAATAI 60

Query: 84  AIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERL 143
           A+AAI++T+PPSLAD G AFNVYYGTAASAANYGGLGGNA+KKD+AEYVYDVP+GWKERL
Sbjct: 61  AVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERL 120

Query: 144 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 203
           VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA
Sbjct: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180

Query: 204 ESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 263
           ESF A+EKKDENGQ+YY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH
Sbjct: 181 ESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240

Query: 264 VHESFKTIGSY 266
           VHESFKT+GSY
Sbjct: 241 VHESFKTVGSY 250

BLAST of CmaCh17G009500 vs. TAIR 10
Match: AT3G63540.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 227.3 bits (578), Expect = 1.5e-59
Identity = 106/140 (75.71%), Postives = 120/140 (85.71%), Query Frame = 0

Query: 125 DVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSD 184
           +V +GWKERLVSKVEKGTNGTDSEFYNPKK++EKEYLTFLAG RQL P+DVILNNLALSD
Sbjct: 3   EVEEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSD 62

Query: 185 VNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPE 244
           V LQD IA A+   +EE+KDE GQ+YY YEID  G HSLI+VTC+KNKLYAHFVNAP PE
Sbjct: 63  VELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNKLYAHFVNAPAPE 122

Query: 245 WNRDQDMLRHVHESFKTIGS 265
           WNRD D L H+ +SFKT+ S
Sbjct: 123 WNRDHDTLTHLRDSFKTVSS 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P826581.6e-7461.41Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A6J1JN947.1e-142100.00thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661... [more]
A0A5D3CG077.1e-11085.26Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A1S3CES27.1e-11085.26thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1H7M13.9e-10885.14thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=36... [more]
A0A0A0K6248.7e-10884.40PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 S... [more]
Match NameE-valueIdentityDescription
XP_022991922.11.5e-141100.00thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima][more]
XP_023547955.18.1e-12496.36thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo... [more]
KAG6575683.11.3e-12194.33Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma... [more]
XP_038896859.18.4e-11387.20thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida][more]
XP_008461279.11.5e-10985.26PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis melo] >KAA00... [more]
Match NameE-valueIdentityDescription
AT3G63540.11.5e-5975.71Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.1000.10Mog1/PsbP, alpha/beta/alpha sandwichcoord: 100..261
e-value: 4.0E-18
score: 67.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePANTHERPTHR31407:SF20THYLAKOID LUMENAL 19 KDA PROTEIN, CHLOROPLASTICcoord: 24..262
NoneNo IPR availablePANTHERPTHR31407FAMILY NOT NAMEDcoord: 24..262
IPR002683PsbP, C-terminalPFAMPF01789PsbPcoord: 120..260
e-value: 1.3E-12
score: 48.1
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichSUPERFAMILY55724Mog1p/PsbP-likecoord: 119..261

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G009500.1CmaCh17G009500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009507 chloroplast
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009523 photosystem II
molecular_function GO:0005509 calcium ion binding