Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAAAATGGAAAAATAATGGATAAGGAGAAAATCCTACGCAGACGAGATAAACCAGAAATCCAAAATCCACGAAAATCGCTCACTATGGCCACAGCAATCTCGCCATTGGCGTTCTTCTCCGCCGCCGCTGCATCCACCGGAACAACCGCCCCAAAACTGCCGCAAAAGCCCCAAATTATCCCCATCCTTCAATCCAAACCCTCACTCTCCTCATTGACCGCCGCGTGTAGCGCCATCGCCATAGCCGCGATCGTGAGCACTAGTCCACCGTCACTGGCCGACGCCGGCCCCGCATTCAACGTCTACTACGGTACCGCTGCCAGCGCCGCCAACTACGGCGGCCTTGGCGGCAACGCCGACAAGAAAGACTCGGCGGAATACGTCTACGACGTGCCGGACGGCTGGAAGGAGCGACTAGTATCAAAAGTCGAAAAAGGTATTTCAAAATCGCCATGGAAATTCCTAAATTAAAGAGCTCGAATAGTTCAATTCATTTCGAAAATCAATTTTAGCTTCTTAATTCCGCAGGTACGAACGGAACCGATAGCGAATTTTACAATCCGAAGAAACGATCGGAGAAAGAATACCTAACTTTCCTGGCAGGAATCCGGCAATTAGGGCCAAAAGATGTGATTCTAAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTCGGCGGAGGAGAAGAAGGATGAGAATGGACAGATTTATTACGAGTATGAGATCGATAGCGCCGGAACTCACAGTTTGATATCGGTGACCTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCACCGACGCCGGAGTGGAATCGGGATCAGGATATGCTTCGGCATGTTCATGAATCCTTTAAGACGATCGGATCATATTAAGCTTTGGTCGCAACGCCGGAGATTTGATCGGAGAGAGGTTTGTGTTGTCGCTATGTACGAATTGGTTGTTACACGCTTATTCTTAAATGATGGAAATCTGTAGCTGTGTACGAATTAGCTCGATCATAAACAAAAAGTAATGAACACTGAACACTGCAAGTCATTTTGAAAAAATAAAAAATAAAGTCACTCAAGATTATACTCAAACTAAACAATATCATTCTTGGTGATAAAAATGGACATGTTCATCATCCAGC
mRNA sequence
AGGAAAATGGAAAAATAATGGATAAGGAGAAAATCCTACGCAGACGAGATAAACCAGAAATCCAAAATCCACGAAAATCGCTCACTATGGCCACAGCAATCTCGCCATTGGCGTTCTTCTCCGCCGCCGCTGCATCCACCGGAACAACCGCCCCAAAACTGCCGCAAAAGCCCCAAATTATCCCCATCCTTCAATCCAAACCCTCACTCTCCTCATTGACCGCCGCGTGTAGCGCCATCGCCATAGCCGCGATCGTGAGCACTAGTCCACCGTCACTGGCCGACGCCGGCCCCGCATTCAACGTCTACTACGGTACCGCTGCCAGCGCCGCCAACTACGGCGGCCTTGGCGGCAACGCCGACAAGAAAGACTCGGCGGAATACGTCTACGACGTGCCGGACGGCTGGAAGGAGCGACTAGTATCAAAAGTCGAAAAAGGTACGAACGGAACCGATAGCGAATTTTACAATCCGAAGAAACGATCGGAGAAAGAATACCTAACTTTCCTGGCAGGAATCCGGCAATTAGGGCCAAAAGATGTGATTCTAAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTCGGCGGAGGAGAAGAAGGATGAGAATGGACAGATTTATTACGAGTATGAGATCGATAGCGCCGGAACTCACAGTTTGATATCGGTGACCTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCACCGACGCCGGAGTGGAATCGGGATCAGGATATGCTTCGGCATGTTCATGAATCCTTTAAGACGATCGGATCATATTAAGCTTTGGTCGCAACGCCGGAGATTTGATCGGAGAGAGGTTTGTGTTGTCGCTATGTACGAATTGGTTGTTACACGCTTATTCTTAAATGATGGAAATCTGTAGCTGTGTACGAATTAGCTCGATCATAAACAAAAAGTAATGAACACTGAACACTGCAAGTCATTTTGAAAAAATAAAAAATAAAGTCACTCAAGATTATACTCAAACTAAACAATATCATTCTTGGTGATAAAAATGGACATGTTCATCATCCAGC
Coding sequence (CDS)
ATGGATAAGGAGAAAATCCTACGCAGACGAGATAAACCAGAAATCCAAAATCCACGAAAATCGCTCACTATGGCCACAGCAATCTCGCCATTGGCGTTCTTCTCCGCCGCCGCTGCATCCACCGGAACAACCGCCCCAAAACTGCCGCAAAAGCCCCAAATTATCCCCATCCTTCAATCCAAACCCTCACTCTCCTCATTGACCGCCGCGTGTAGCGCCATCGCCATAGCCGCGATCGTGAGCACTAGTCCACCGTCACTGGCCGACGCCGGCCCCGCATTCAACGTCTACTACGGTACCGCTGCCAGCGCCGCCAACTACGGCGGCCTTGGCGGCAACGCCGACAAGAAAGACTCGGCGGAATACGTCTACGACGTGCCGGACGGCTGGAAGGAGCGACTAGTATCAAAAGTCGAAAAAGGTACGAACGGAACCGATAGCGAATTTTACAATCCGAAGAAACGATCGGAGAAAGAATACCTAACTTTCCTGGCAGGAATCCGGCAATTAGGGCCAAAAGATGTGATTCTAAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTCGGCGGAGGAGAAGAAGGATGAGAATGGACAGATTTATTACGAGTATGAGATCGATAGCGCCGGAACTCACAGTTTGATATCGGTGACCTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCACCGACGCCGGAGTGGAATCGGGATCAGGATATGCTTCGGCATGTTCATGAATCCTTTAAGACGATCGGATCATATTAA
Protein sequence
MDKEKILRRRDKPEIQNPRKSLTMATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQSKPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY
Homology
BLAST of CmaCh17G009500 vs. ExPASy Swiss-Prot
Match:
P82658 (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g63540 PE=1 SV=2)
HSP 1 Score: 280.8 bits (717), Expect = 1.6e-74
Identity = 148/241 (61.41%), Postives = 177/241 (73.44%), Query Frame = 0
Query: 24 MATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQSKPSLSSLTAACSAIAIAAIVSTS 83
MAT I F A+ + T P I+P + +SL AA +A ++ +V
Sbjct: 1 MATKI-----FLASPVISATRTP-------IVPKAIASRLGTSLAAALAATSVLTMVPVL 60
Query: 84 PPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVSKVEKGTN 143
P+ + + +YYGTAASAANYGG GGN+D+K SAEYVYDVP+GWKERLVSKVEKGTN
Sbjct: 61 -PAAGEGNQTYKIYYGTAASAANYGGYGGNSDRKTSAEYVYDVPEGWKERLVSKVEKGTN 120
Query: 144 GTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKK 203
GTDSEFYNPKK++EKEYLTFLAG RQL P+DVILNNLALSDV LQD IA A+ +EE+K
Sbjct: 121 GTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSDVELQDLIAGADKVVSEERK 180
Query: 204 DENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIG 263
DE GQ+YY YEID G HSLI+VTC+KN+LYAHFVNAP PEWNRD D L H+ +SFKT+
Sbjct: 181 DETGQVYYLYEIDGVGKHSLITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHLRDSFKTVS 228
Query: 264 S 265
S
Sbjct: 241 S 228
BLAST of CmaCh17G009500 vs. ExPASy TrEMBL
Match:
A0A6J1JN94 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488417 PE=4 SV=1)
HSP 1 Score: 513.1 bits (1320), Expect = 7.1e-142
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
Query: 1 MDKEKILRRRDKPEIQNPRKSLTMATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQS 60
MDKEKILRRRDKPEIQNPRKSLTMATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQS
Sbjct: 1 MDKEKILRRRDKPEIQNPRKSLTMATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQS 60
Query: 61 KPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSA 120
KPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSA
Sbjct: 61 KPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSA 120
Query: 121 EYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNL 180
EYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNL
Sbjct: 121 EYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNL 180
Query: 181 ALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNA 240
ALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNA
Sbjct: 181 ALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNA 240
Query: 241 PTPEWNRDQDMLRHVHESFKTIGSY 266
PTPEWNRDQDMLRHVHESFKTIGSY
Sbjct: 241 PTPEWNRDQDMLRHVHESFKTIGSY 265
BLAST of CmaCh17G009500 vs. ExPASy TrEMBL
Match:
A0A5D3CG07 (Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00930 PE=4 SV=1)
HSP 1 Score: 406.8 bits (1044), Expect = 7.1e-110
Identity = 214/251 (85.26%), Postives = 228/251 (90.84%), Query Frame = 0
Query: 24 MATAISPLAFFSAAAASTGTTAPKLPQ-----KPQIIPILQSKPSLSSLTA----ACSAI 83
MATAI+PLAF ++ AASTGTTAPK PQ KPQ IPILQSK LS TA A +AI
Sbjct: 1 MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQ-IPILQSKSPLSISTAPISIAATAI 60
Query: 84 AIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERL 143
A+AAI++T+PPSLAD G AFNVYYGTAASAANYGGLGGNA+KKD+AEYVYDVP+GWKERL
Sbjct: 61 AVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERL 120
Query: 144 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 203
VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA
Sbjct: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180
Query: 204 ESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 263
ESF A+EKKDENGQ+YY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH
Sbjct: 181 ESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240
Query: 264 VHESFKTIGSY 266
VHESFKT+GSY
Sbjct: 241 VHESFKTVGSY 250
BLAST of CmaCh17G009500 vs. ExPASy TrEMBL
Match:
A0A1S3CES2 (thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499916 PE=4 SV=1)
HSP 1 Score: 406.8 bits (1044), Expect = 7.1e-110
Identity = 214/251 (85.26%), Postives = 228/251 (90.84%), Query Frame = 0
Query: 24 MATAISPLAFFSAAAASTGTTAPKLPQ-----KPQIIPILQSKPSLSSLTA----ACSAI 83
MATAI+PLAF ++ AASTGTTAPK PQ KPQ IPILQSK LS TA A +AI
Sbjct: 1 MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQ-IPILQSKSPLSISTAPISIAATAI 60
Query: 84 AIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERL 143
A+AAI++T+PPSLAD G AFNVYYGTAASAANYGGLGGNA+KKD+AEYVYDVP+GWKERL
Sbjct: 61 AVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERL 120
Query: 144 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 203
VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA
Sbjct: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180
Query: 204 ESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 263
ESF A+EKKDENGQ+YY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH
Sbjct: 181 ESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240
Query: 264 VHESFKTIGSY 266
VHESFKT+GSY
Sbjct: 241 VHESFKTVGSY 250
BLAST of CmaCh17G009500 vs. ExPASy TrEMBL
Match:
A0A6J1H7M1 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460820 PE=4 SV=1)
HSP 1 Score: 401.0 bits (1029), Expect = 3.9e-108
Identity = 212/249 (85.14%), Postives = 223/249 (89.56%), Query Frame = 0
Query: 24 MATAISPLAFFSA-AAASTGTTAPKLPQKP----QIIPILQSKPS--LSSLTAACSAIAI 83
MATAISPLAFFSA AAA+TG PK Q P +IP+LQS PS LSSL+A SAIA+
Sbjct: 1 MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLSAPISAIAV 60
Query: 84 AAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVS 143
AAI+ST+PPSLADAG AFNVYYGTAASAANYGG GGNA KKDSAEY+YDVP+GWKERLVS
Sbjct: 61 AAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKERLVS 120
Query: 144 KVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAES 203
KVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 KVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIASAEG 180
Query: 204 FSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVH 263
SAEEKKDENGQIYY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHVH
Sbjct: 181 ISAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDMLRHVH 240
Query: 264 ESFKTIGSY 266
ESFKT+GSY
Sbjct: 241 ESFKTVGSY 249
BLAST of CmaCh17G009500 vs. ExPASy TrEMBL
Match:
A0A0A0K624 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 SV=1)
HSP 1 Score: 399.8 bits (1026), Expect = 8.7e-108
Identity = 211/250 (84.40%), Postives = 226/250 (90.40%), Query Frame = 0
Query: 24 MATAISPLAFFSAAAASTGTTAPKLPQ-----KPQIIPILQSKPSLSS---LTAACSAIA 83
MATAI+PLAF + STGTTAPK PQ KPQ IPILQSKP LSS ++ A +AIA
Sbjct: 1 MATAIAPLAFLT----STGTTAPKPPQASSLPKPQ-IPILQSKPPLSSTAPISIAATAIA 60
Query: 84 IAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLV 143
+AAI+ST+ PSLAD G AFNVYYGTAASAANYGGLGGNA+KKD+AEY+YDVP+GWKERLV
Sbjct: 61 VAAILSTATPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYIYDVPEGWKERLV 120
Query: 144 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 203
SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
Query: 204 SFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 263
SF AEEKKDENGQ+YY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
Query: 264 HESFKTIGSY 266
H+SFKT+GSY
Sbjct: 241 HDSFKTVGSY 245
BLAST of CmaCh17G009500 vs. NCBI nr
Match:
XP_022991922.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima])
HSP 1 Score: 513.1 bits (1320), Expect = 1.5e-141
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 0
Query: 1 MDKEKILRRRDKPEIQNPRKSLTMATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQS 60
MDKEKILRRRDKPEIQNPRKSLTMATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQS
Sbjct: 1 MDKEKILRRRDKPEIQNPRKSLTMATAISPLAFFSAAAASTGTTAPKLPQKPQIIPILQS 60
Query: 61 KPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSA 120
KPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSA
Sbjct: 61 KPSLSSLTAACSAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSA 120
Query: 121 EYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNL 180
EYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNL
Sbjct: 121 EYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNL 180
Query: 181 ALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNA 240
ALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNA
Sbjct: 181 ALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNA 240
Query: 241 PTPEWNRDQDMLRHVHESFKTIGSY 266
PTPEWNRDQDMLRHVHESFKTIGSY
Sbjct: 241 PTPEWNRDQDMLRHVHESFKTIGSY 265
BLAST of CmaCh17G009500 vs. NCBI nr
Match:
XP_023547955.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 454.1 bits (1167), Expect = 8.1e-124
Identity = 238/247 (96.36%), Postives = 239/247 (96.76%), Query Frame = 0
Query: 24 MATAISPLAFFSAAAASTGTTAPKL-----PQKPQIIPILQSKPSLSSLTAACSAIAIAA 83
MA AISPLAFFSAAAASTGTTAPKL PQKPQIIPILQSKPSLSSLTAA SAIAIAA
Sbjct: 1 MAAAISPLAFFSAAAASTGTTAPKLPQIPPPQKPQIIPILQSKPSLSSLTAAGSAIAIAA 60
Query: 84 IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVSKV 143
IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNA+KKDSAEYVYDVPDGWKERLVSKV
Sbjct: 61 IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKV 120
Query: 144 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 203
EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS
Sbjct: 121 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 180
Query: 204 AEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHES 263
AEEKKDENGQIYYEYEID AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHES
Sbjct: 181 AEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHES 240
Query: 264 FKTIGSY 266
FKTIGSY
Sbjct: 241 FKTIGSY 247
BLAST of CmaCh17G009500 vs. NCBI nr
Match:
KAG6575683.1 (Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014238.1 Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 446.8 bits (1148), Expect = 1.3e-121
Identity = 233/247 (94.33%), Postives = 236/247 (95.55%), Query Frame = 0
Query: 24 MATAISPLAFFSAAAASTGTTAPKL-----PQKPQIIPILQSKPSLSSLTAACSAIAIAA 83
MA ISPLAFFSAAAASTG TAPKL PQKPQIIP+LQSKPSLSSLTAA SAIAIA
Sbjct: 1 MAAVISPLAFFSAAAASTGATAPKLPQIPPPQKPQIIPVLQSKPSLSSLTAAGSAIAIAT 60
Query: 84 IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLVSKV 143
IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNA+KKDSAEYVYDVPDGWKERLVSKV
Sbjct: 61 IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKV 120
Query: 144 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 203
EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS
Sbjct: 121 EKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFS 180
Query: 204 AEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHES 263
AEEKKDENGQIYYEYEID AGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHVHES
Sbjct: 181 AEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRHVHES 240
Query: 264 FKTIGSY 266
FKTIGSY
Sbjct: 241 FKTIGSY 247
BLAST of CmaCh17G009500 vs. NCBI nr
Match:
XP_038896859.1 (thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida])
HSP 1 Score: 417.5 bits (1072), Expect = 8.4e-113
Identity = 218/250 (87.20%), Postives = 229/250 (91.60%), Query Frame = 0
Query: 24 MATAISPLAFFSAAAASTGTTAPKLPQKPQI----IPILQSKPSLSSLTA----ACSAIA 83
MATAI+PLAFFSAAAASTGTTAPK PQ P + IPILQSKP LS+ TA A + IA
Sbjct: 1 MATAITPLAFFSAAAASTGTTAPKPPQTPPLPKPQIPILQSKPPLSTSTAPISIAATTIA 60
Query: 84 IAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERLV 143
+AAI+ST+PPSLAD G AFNVYYGTAASAANYGGLGGNA KKD+AEY+YDVP+GWKERLV
Sbjct: 61 VAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120
Query: 144 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 203
SKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
Query: 204 SFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 263
SF AEEKKDENGQIYY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
Query: 264 HESFKTIGSY 266
HESFKTIGSY
Sbjct: 241 HESFKTIGSY 250
BLAST of CmaCh17G009500 vs. NCBI nr
Match:
XP_008461279.1 (PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis melo] >KAA0058638.1 thylakoid lumenal 19 kDa protein [Cucumis melo var. makuwa] >TYK10445.1 thylakoid lumenal 19 kDa protein [Cucumis melo var. makuwa])
HSP 1 Score: 406.8 bits (1044), Expect = 1.5e-109
Identity = 214/251 (85.26%), Postives = 228/251 (90.84%), Query Frame = 0
Query: 24 MATAISPLAFFSAAAASTGTTAPKLPQ-----KPQIIPILQSKPSLSSLTA----ACSAI 83
MATAI+PLAF ++ AASTGTTAPK PQ KPQ IPILQSK LS TA A +AI
Sbjct: 1 MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQ-IPILQSKSPLSISTAPISIAATAI 60
Query: 84 AIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERL 143
A+AAI++T+PPSLAD G AFNVYYGTAASAANYGGLGGNA+KKD+AEYVYDVP+GWKERL
Sbjct: 61 AVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERL 120
Query: 144 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 203
VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA
Sbjct: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180
Query: 204 ESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 263
ESF A+EKKDENGQ+YY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH
Sbjct: 181 ESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240
Query: 264 VHESFKTIGSY 266
VHESFKT+GSY
Sbjct: 241 VHESFKTVGSY 250
BLAST of CmaCh17G009500 vs. TAIR 10
Match:
AT3G63540.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )
HSP 1 Score: 227.3 bits (578), Expect = 1.5e-59
Identity = 106/140 (75.71%), Postives = 120/140 (85.71%), Query Frame = 0
Query: 125 DVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSD 184
+V +GWKERLVSKVEKGTNGTDSEFYNPKK++EKEYLTFLAG RQL P+DVILNNLALSD
Sbjct: 3 EVEEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSD 62
Query: 185 VNLQDQIASAESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPE 244
V LQD IA A+ +EE+KDE GQ+YY YEID G HSLI+VTC+KNKLYAHFVNAP PE
Sbjct: 63 VELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNKLYAHFVNAPAPE 122
Query: 245 WNRDQDMLRHVHESFKTIGS 265
WNRD D L H+ +SFKT+ S
Sbjct: 123 WNRDHDTLTHLRDSFKTVSS 142
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P82658 | 1.6e-74 | 61.41 | Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 ... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1JN94 | 7.1e-142 | 100.00 | thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661... | [more] |
A0A5D3CG07 | 7.1e-110 | 85.26 | Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... | [more] |
A0A1S3CES2 | 7.1e-110 | 85.26 | thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
A0A6J1H7M1 | 3.9e-108 | 85.14 | thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=36... | [more] |
A0A0A0K624 | 8.7e-108 | 84.40 | PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 S... | [more] |
Match Name | E-value | Identity | Description | |
XP_022991922.1 | 1.5e-141 | 100.00 | thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima] | [more] |
XP_023547955.1 | 8.1e-124 | 96.36 | thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo... | [more] |
KAG6575683.1 | 1.3e-121 | 94.33 | Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma... | [more] |
XP_038896859.1 | 8.4e-113 | 87.20 | thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida] | [more] |
XP_008461279.1 | 1.5e-109 | 85.26 | PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis melo] >KAA00... | [more] |
Match Name | E-value | Identity | Description | |
AT3G63540.1 | 1.5e-59 | 75.71 | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | [more] |