CmaCh17G009470 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh17G009470
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr17: 7061039 .. 7062085 (-)
RNA-Seq ExpressionCmaCh17G009470
SyntenyCmaCh17G009470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCAGCCTTGCAGAGAAGAGGAGTTGAAATGAATTGCAGACTGAAGAGGAGAAATGAAGTGCAGAGTATAGGAGTTGAAATGAATTCCTCTCAAAATAAAATGAATGACAAAGGAAGGATTACAGAGTCTCTGTATATTGGGCTTTGATTTTGGGCCTTTGGACTTTAATTTCATTTTTTTTATTTTTTGGGTTGGGCCGAGTTGACCCAATCATTTTCTTTTGGTACCCGAACCCGACCCAAATCAGATTGGGTTAAAAAAAAATGAACGCAACCCAAACTCAAAATCCAACGCAACCCAACCCAACCCTTACAGCCAGTTCCTCGTAAGCTCGCCACTATCTACATTGTCATTAGTCCAACTCCCCTTCTCTGACTTTTACCCCTTTTCTCCAATCACAACGTTCCACGTATACACCAAAACCAGCCATCAAGAATTAGTAACGTTTTTGTTTGTTTTTTTTTTTTTTAATTTTATTTTTGGTCCACTTCGGACAGCCCCGATGGCCCTTTAAATAGGGAATTCCATTGTGAAAACTTGGCTTTTCTCTCCACCTTCCTAACCCCATCGCCTTTCTGATTGCTGTAGGGTTAGTTTTCCCAATTTCCTCCTCTTTTTCTTTTCTTCTCTTCAACGAAATTCGTTCTTCGCCGCATACGGCTATTTTGTTTCTTTGATTTCTATATGATTTTTGTTCCTTTTGATTTTCAGTGAAAGGAGGGGAGCGGAGAATCGTCATCTAGCTGGGAATTTTATGGTGTTTTCTATTGTCACGGATACGCAGCGGTTGAATACAGCTTTCCCTCCTACACCTAACAACCATCAGGTCAGTATTAAGAATTTGAGGGTTTCTTCCATTTCTCGATATTGATTTTTTCGATATCTGTTGGTTTCTATGCAAATTGGTTGTTTCTGAGGAAGCGATTATGCTTTCTTCTGTTTTGCTGAAATTATTGCAATACTTGACAGAAATTATTAATCAAACTTGTGGATGGAAGTAATCTTATGATGCGTTTTTGGTATATGCTTGCGTTTTCTTAG

mRNA sequence

ATGGCTCCAGCCTTGCAGAGAAGAGGAGTTGAAATGAATTGCAGACTGAAGAGGAGAAATGAAGTGCAGAGTATAGGAGTTGAAATGAATTCCTCTCAAAATAAAATGAATGACAAAGGAAGGATTACAGAGTCTCTTGAAAGGAGGGGAGCGGAGAATCGTCATCTAGCTGGGAATTTTATGGTGTTTTCTATTGTCACGGATACGCAGCGGTTGAATACAGCTTTCCCTCCTACACCTAACAACCATCAGAAATTATTAATCAAACTTGTGGATGGAAGTAATCTTATGATGCGTTTTTGGTATATGCTTGCGTTTTCTTAG

Coding sequence (CDS)

ATGGCTCCAGCCTTGCAGAGAAGAGGAGTTGAAATGAATTGCAGACTGAAGAGGAGAAATGAAGTGCAGAGTATAGGAGTTGAAATGAATTCCTCTCAAAATAAAATGAATGACAAAGGAAGGATTACAGAGTCTCTTGAAAGGAGGGGAGCGGAGAATCGTCATCTAGCTGGGAATTTTATGGTGTTTTCTATTGTCACGGATACGCAGCGGTTGAATACAGCTTTCCCTCCTACACCTAACAACCATCAGAAATTATTAATCAAACTTGTGGATGGAAGTAATCTTATGATGCGTTTTTGGTATATGCTTGCGTTTTCTTAG

Protein sequence

MAPALQRRGVEMNCRLKRRNEVQSIGVEMNSSQNKMNDKGRITESLERRGAENRHLAGNFMVFSIVTDTQRLNTAFPPTPNNHQKLLIKLVDGSNLMMRFWYMLAFS
Homology
[Close]
BLAST of CmaCh17G009470 vs. NCBI nr
Match: KAG7014235.1 (hypothetical protein SDJN02_24410, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-12
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 0 

Query: 19  RNEVQSIGVEMNSSQNKMNDKGRITESLERRGAENRHLAGNFMVFSIVTDTQRLNTAFPP 78
           R ++ ++ +++  + N +  + RI    ERRGAENRHLAGNFMVFSIVT+TQR NTAFPP
Sbjct: 243 RLQILTLTLQIAKNLNALFVRVRIVSFFERRGAENRHLAGNFMVFSIVTNTQRSNTAFPP 302

Query: 79  TPNNHQ 85
           TPNNHQ
Sbjct: 303 TPNNHQ 308

[Close]
BLAST of CmaCh17G009470 vs. NCBI nr
Match: KAG6575681.1 (Zinc finger A20 and AN1 domain-containing stress-associated protein 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 78.6 bits (192), Expect = 3.7e-11
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 0 

Query: 19  RNEVQSIGVEMNSSQNKMNDKGRITESL-----ERRGAENRHLAGNFMVFSIVTDTQRLN 78
           R ++ ++ +++  + N +  + RI   L     ERRGAENRHLAGNFMVFSIVT+TQR N
Sbjct: 243 RLQILTLTLQIAKNLNALFVRVRIVSFLCVTGFERRGAENRHLAGNFMVFSIVTNTQRSN 302

Query: 79  TAFPPTPNNHQK 86
           TAFPPTPNNHQ+
Sbjct: 303 TAFPPTPNNHQE 314

The following BLAST results are available for this feature:
BLAST of CmaCh17G009470 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh17G009470 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh17G009470 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014235.12.6e-1260.61hypothetical protein SDJN02_24410, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6575681.13.7e-1156.94Zinc finger A20 and AN1 domain-containing stress-associated protein 8, partial [... [more]
BLAST of CmaCh17G009470 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G009470.1CmaCh17G009470.1mRNA