CmaCh17G009270 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh17G009270
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionCCR4-NOT transcription complex subunit like
LocationCma_Chr17: 6951138 .. 6953544 (+)
RNA-Seq ExpressionCmaCh17G009270
SyntenyCmaCh17G009270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACGTGGATTACGAATAGATTAAGCACCATCCGTTCTCCGCCCACAGTTTCTTGTGAGCTCGCTTCTCTTTGGAAGTTCCAAAGTCTTTGTAATACGAGTGAAGGTGAATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCTTCTTTCAGGTATCCATCGTTATTCGATTCCTCGCATTCAATTTAAATGATCTCTCAGGAGATATCGGGATTTCTATATATGCTGGAATGTGACTAGTGAGCTCGTTAACAATGAAGTTCATCTGATAATTAATTCTATAAAGTGGATCGGCTTTGATTCTTTTGTTGAAAATGGAATTTCCATTTTAGCAGGTAGTTGCTAATTCCTAATTGCTTTTGGCTGCTAACGCCAAGTGCTTCTACTGGTATTAGGTATTGTTTTTCAGAATTCTTATATTATAAGTTTCTATGTCACGCACGTTTAATTTGATTCTTACTTGATCAGTTTTCTTCGATCCCTCGCATTCAACGTTTCGAATCACATAGGATATACAGATCGTAATGTTGAATTGAGCATGTTTGCAGAATCCTATTACATTTCTGTGTTGAAAATGGAATTGGACGATAGCTGCTGCCTTGCGGATTCTTAATTGGTTTCGGCTACTAAAGCAAACAGCTTATACTAAATCCTGGTTGCTTTTGTTTTGGCAAGTAGCGAAAAAGAGCTTATACTAGTATTAGGATTGAGGCTTTATTTTGCTGATCTTGTTCGACATCTAATGGGATGAATCTTTGATTTGCTACCCAATTGGTCACTGAACGAGCATGTATAGAATTTTGTCCATTGATTTTTAGTTTCCGGATAAGACTAGGGAAAGTCTTATTAGTTCTTCCTGAAAGCTCTTCTTTGATAGGGAAGTAGTTATAATTAATATGTTCGGGAAATGATTGTCCTGAAATGGCCTATATGGTATCTTGAAAAAGAATTTGGATTTTTTTGGGTTAACCACTGCTAAAGCAAAGGGGCAGGAAATAGCAGACCAGAATCCGTCAACTGAGCTGCTAGTCCAACTTCTTGTTGGATGCACAAAGTATGCTCTTGTTGGATGCACAAAGTATGCTCTTGTTGATGCACAAAAACTGTTAAAATGAAGTGAAATGAGTCTGTAACAGCCCAAGCCCACCGCTAGCAGCTATTGCCCGCTTTGGCCCATTGCGTATCGCCGTCAGTTTCACAGTTTTTAAAACGCGTCTGTTAGGGAGAGGGTTCCACACTCTTATAAGGAATGTTCAACCGTTGTGGGATCTCACAATCCACCCCCCTTGGAGGTCTAGCGTCCTCGCTAGCATACCGCTTGGTGTTTGGCTTTGATACCATTTGTAACAGCCCAAACCCACCACTAATAGATATTGTCCGTTTTGGCTCGTTACGTATTACCATCAGCCTCATAATTTTTAGAACACGTCAATTAGGGAGAGGTTTTCACACCCTTATAAGGAATGTTTCATTCTCCTCTCCAACCGATGTGGGATCTCACATATCAAACCCATCAGCATCTCTAAATTCTTACAAGCCAAGGGGATTCTGTCTTTTCAATGATACGGAGTTTCCTCTTTAAAATCCTCTGGAAGTACTGAAGTGGAAAATACAGGTTCCTATCATTCCTGGTTCCATCTTCATTGTCCTCTGTTATTCGTTTAGGTTTTCGCTTGATCTACAAATCTAAATTCTAGACACAATGAGCCTGAGATGACTGATATTTGTTTTCACAATATTGCTACTCAGATTAGTGCTTGCGTGATTCCTTTTATGCAGGTACAGGAACACCAAAGGATTGGAATTGAGTCCAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACGGAAATTCCATCGAGGAGGAAAATGGTTCGAGTAAAGCAAGTAGTGACGCCCAAGGTCCTCCATTTCTTACTATCTTGGCTGGAATCTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGTCGTCAAGCTGATCTCAACATAGTATGCCATTATTGGCATAATTCATGTTGCCTTAGAAGCTTAAATCCGTGTGGTTATATTCCTATCACACAACTCACTTTTTAGCTAGTTTTTTTAGCTTACTTCTAATGAATAGTTTTTATTTTCATCTCTTTTATGCCTTGCTTCAGCCTTCAACTCTGTTTAATTGTGAGGAAGGCATTCTTCACAGGCAGGTGACTCCATAAACTATAATTAAATGGACTTAACGTATTGTGTAGACTATCCCATCTATTAAAATGTCCAAGTCAAGCCTCCTTAGGTGATCCGTCT

mRNA sequence

ATGACACGTGGATTACGAATAGATTAAGCACCATCCGTTCTCCGCCCACAGTTTCTTGTGAGCTCGCTTCTCTTTGGAAGTTCCAAAGTCTTTGTAATACGAGTGAAGGTGAATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCTTCTTTCAGGTACAGGAACACCAAAGGATTGGAATTGAGTCCAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACGGAAATTCCATCGAGGAGGAAAATGGTTCGAGTAAAGCAAGTAGTGACGCCCAAGGTCCTCCATTTCTTACTATCTTGGCTGGAATCTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGTCGTCAAGCTGATCTCAACATAGTATGCCATTATTGGCATAATTCATGTTGCCTTAGAAGCTTAAATCCGTGTGGTTATATTCCTATCACACAACTCACTTTTTAGCTAGTTTTTTTAGCTTACTTCTAATGAATAGTTTTTATTTTCATCTCTTTTATGCCTTGCTTCAGCCTTCAACTCTGTTTAATTGTGAGGAAGGCATTCTTCACAGGCAGGTGACTCCATAAACTATAATTAAATGGACTTAACGTATTGTGTAGACTATCCCATCTATTAAAATGTCCAAGTCAAGCCTCCTTAGGTGATCCGTCT

Coding sequence (CDS)

ATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCTTCTTTCAGGTACAGGAACACCAAAGGATTGGAATTGAGTCCAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACGGAAATTCCATCGAGGAGGAAAATGGTTCGAGTAAAGCAAGTAGTGACGCCCAAGGTCCTCCATTTCTTACTATCTTGGCTGGAATCTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGTCGTCAAGCTGATCTCAACATAG

Protein sequence

MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSFSITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVVKLIST
Homology
BLAST of CmaCh17G009270 vs. ExPASy TrEMBL
Match: A0A6J1JUC2 (uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.3e-57
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0

Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF 60
           MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF 60

Query: 61  SITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV
Sbjct: 61  SITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLIST 126
           KLIST
Sbjct: 121 KLIST 125

BLAST of CmaCh17G009270 vs. ExPASy TrEMBL
Match: A0A6J1GPL5 (uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC111455984 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.9e-55
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0

Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF 60
           MASIF+APPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLEL  RSF
Sbjct: 1   MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60

Query: 61  SITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSDGNSI+EENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV
Sbjct: 61  SITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLIST 126
           KLIST
Sbjct: 121 KLIST 125

BLAST of CmaCh17G009270 vs. ExPASy TrEMBL
Match: A0A6J1KVQ7 (uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.3e-37
Identity = 92/126 (73.02%), Postives = 107/126 (84.92%), Query Frame = 0

Query: 1   MASIFAAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRS 60
           MAS+FAAPPS+L L+S RPSL H A LP SI G+++H N FPIPSFRY+NTKGL+L  RS
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFRYKNTKGLKLRQRS 60

Query: 61  FSITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLV 120
           FSITASNSSDGNS +EEN  SK + DAQGPPFLTILAG FVFSL+LW++SS+ T+LI LV
Sbjct: 61  FSITASNSSDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALV 120

Query: 121 VKLIST 126
           VKLIST
Sbjct: 121 VKLIST 125

BLAST of CmaCh17G009270 vs. ExPASy TrEMBL
Match: A0A6J1H506 (uncharacterized protein LOC111460632 OS=Cucurbita moschata OX=3662 GN=LOC111460632 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.1e-36
Identity = 90/126 (71.43%), Postives = 106/126 (84.13%), Query Frame = 0

Query: 1   MASIFAAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRS 60
           MAS+FAAPPS+L L+S RPSL H A LP SI G+++H N FPIPSFRY+NTKGL+L  RS
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFRYKNTKGLKLRQRS 60

Query: 61  FSITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLV 120
           FSITASNSSDGNS +E+N  SK + DAQGPPFLTILAG FVFSL+LW++SS+ T+LI L 
Sbjct: 61  FSITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALA 120

Query: 121 VKLIST 126
           VKLIST
Sbjct: 121 VKLIST 125

BLAST of CmaCh17G009270 vs. ExPASy TrEMBL
Match: A0A0A0K9W1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429580 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.7e-35
Identity = 95/126 (75.40%), Postives = 103/126 (81.75%), Query Frame = 0

Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELSPRS 60
           MAS+FAAPPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLEL  R 
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQR- 60

Query: 61  FSITASNSSDGNSIEEENGSSKASS-DAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120
            SI AS S+DGNSI+EEN SSKASS DAQGPPFLTILAG FV SL+LW+ SSA TSL+GL
Sbjct: 61  -SIAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGL 120

Query: 121 VVKLIS 125
           VVKLIS
Sbjct: 121 VVKLIS 124

BLAST of CmaCh17G009270 vs. NCBI nr
Match: XP_022991945.1 (uncharacterized protein LOC111488436 [Cucurbita maxima])

HSP 1 Score: 230.7 bits (587), Expect = 6.8e-57
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0

Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF 60
           MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF 60

Query: 61  SITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV
Sbjct: 61  SITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLIST 126
           KLIST
Sbjct: 121 KLIST 125

BLAST of CmaCh17G009270 vs. NCBI nr
Match: XP_022953425.1 (uncharacterized protein LOC111455984 [Cucurbita moschata])

HSP 1 Score: 223.0 bits (567), Expect = 1.4e-54
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 0

Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF 60
           MASIF+APPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLEL  RSF
Sbjct: 1   MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60

Query: 61  SITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSDGNSI+EENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV
Sbjct: 61  SITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLIST 126
           KLIST
Sbjct: 121 KLIST 125

BLAST of CmaCh17G009270 vs. NCBI nr
Match: KAG6575660.1 (hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014210.1 hypothetical protein SDJN02_24385 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.1 bits (562), Expect = 5.4e-54
Identity = 121/125 (96.80%), Postives = 122/125 (97.60%), Query Frame = 0

Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF 60
           MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLEL  RSF
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60

Query: 61  SITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSD NSI+EENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV
Sbjct: 61  SITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLIST 126
           KLIST
Sbjct: 121 KLIST 125

BLAST of CmaCh17G009270 vs. NCBI nr
Match: XP_023547947.1 (uncharacterized protein LOC111806743 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.9 bits (546), Expect = 3.9e-52
Identity = 118/125 (94.40%), Postives = 119/125 (95.20%), Query Frame = 0

Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF 60
           MASIFAAPPSRLNLTSRPSLIHGAVLPSS AGIQYHSNAFPIPSF YRNTKGLEL  RSF
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSTAGIQYHSNAFPIPSFSYRNTKGLELRQRSF 60

Query: 61  SITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSD NSI+EENGSSKAS DAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV
Sbjct: 61  SITASNSSDRNSIKEENGSSKASRDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLIST 126
           KLIST
Sbjct: 121 KLIST 125

BLAST of CmaCh17G009270 vs. NCBI nr
Match: XP_038899532.1 (uncharacterized protein LOC120086813 isoform X1 [Benincasa hispida])

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-44
Identity = 103/125 (82.40%), Postives = 110/125 (88.00%), Query Frame = 0

Query: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF 60
           MASIFAAP  RLNLTSRPSLIH A LPSSI  IQ+HSNA P PSFRYRNT+GLEL  RSF
Sbjct: 1   MASIFAAPSFRLNLTSRPSLIHRAALPSSIDAIQFHSNASPFPSFRYRNTRGLELRQRSF 60

Query: 61  SITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120
           SITASNSSDGNSI+EENGSSKAS+DAQGPPFLTILAGIFVFSL+LW+ SS  TS + LVV
Sbjct: 61  SITASNSSDGNSIKEENGSSKASTDAQGPPFLTILAGIFVFSLVLWIFSSVVTSFLSLVV 120

Query: 121 KLIST 126
           KLIST
Sbjct: 121 KLIST 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JUC23.3e-57100.00uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436... [more]
A0A6J1GPL56.9e-5596.80uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC1114559... [more]
A0A6J1KVQ71.3e-3773.02uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025... [more]
A0A6J1H5061.1e-3671.43uncharacterized protein LOC111460632 OS=Cucurbita moschata OX=3662 GN=LOC1114606... [more]
A0A0A0K9W12.7e-3575.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429580 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022991945.16.8e-57100.00uncharacterized protein LOC111488436 [Cucurbita maxima][more]
XP_022953425.11.4e-5496.80uncharacterized protein LOC111455984 [Cucurbita moschata][more]
KAG6575660.15.4e-5496.80hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023547947.13.9e-5294.40uncharacterized protein LOC111806743 [Cucurbita pepo subsp. pepo][more]
XP_038899532.12.3e-4482.40uncharacterized protein LOC120086813 isoform X1 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G009270.1CmaCh17G009270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane