CmaCh17G008710 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh17G008710
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr17: 6677914 .. 6678957 (-)
RNA-Seq ExpressionCmaCh17G008710
SyntenyCmaCh17G008710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTAGCGCATTAGAACCTTGGAAAACCGGAATAAGAGGATAGTTTCGAAGCTTCCATCGCGGTGGTTGAGCTCGGCAAAGTTGGAAATCCACTGTACACAAAAAAAAAAAAAAAAATAGAGAAAATCGGATACTTACCGGACCCGACCCGCCGTGGTTTTCAGGTCGACGGCGTTGTTCCTTCTCGGATTACAGCTTCAGAATCGTCCAACGTCTATCTACGACTACGGCCAAGATCTCACGTTCTCCATCAATGTTCTGTAATTCCCTTCAATCCTCTCTCTTTTCTCTACTTGAACTGTCTTCCAGGGTTTAGTTTTATGCTGTCATTCTCTTTCCGGGATGTATTTTGAACTTCCTTTTGTGTACAATTGCATTGCGGGAAGGGGAAAGTTGAGAGACGACAGAAACCAAGTTATTTTTTCGTGTTAAAAATTTGGTAATTCGACGATTTGTGATGTTTGTCTGTTTTCACCTGAAGGATAAGATTCAAGATTGTTGTTGAGTTTTGATTTCTGGTAATCTTCAATGGTGGATTTGCTTGGAACTTATGTGATCAGGGCGCAGGAAGGAAATCCCTAATTTAATGTTTCAGGAACCTGAGATACACAGAAACCGATTTGTTACCTGGTAGTTTCTTGTAGATTCTCGTGTTGTCTGAATCATTTTGTTTCTCTTGACATAAAATTTCTTCCTAATTTGTAGAAACGAGTTTCTTTTGTTTACTTTTATGGCATTGAAACCTGATTAGTTTGTGAGCCGATGGAGACCTGGAATTGAGGATGGTTGAAAATTGAAGTACTTCATTGTACATTATCCTAATAGATTGATTTCGTTAATATAATTGTTAAGAACTGACTCTCTATACTTGTTTGATCTCTGCGAGCTGCTGGCTTGATTTTTACTTTACTGAAAAATTAGAGCCTAATCTGTTTATTGTCTTCCCGATCTGTCTCTGCCTTCCTCAGAATCTTAAGCCATTTAGTTTTGTAATTGTTCATATGCTGATTAAGAAACGGTTAATTCTTGTTAGGGGCTGA

mRNA sequence

ATGGCCGATAGTTTCGAAGCTTCCATCGCGGTGGTTGAGCTCGGCAAAGTTGGAAATCCACTGTACACAAAAAAAAAAAAAAAAATAGAGAAAATCGGATACTTACCGGACCCGACCCGCCGTGGTTTTCAGGTCGACGGCGTTGTTCCTTCTCGGATTACAGCTTCAGAATCGTCCAACGTCTATCTACGACTACGGCCAAGATCTCACGTTCTCCATCAATGTTCTGGTTTAGTTTTATGCTGTCATTCTCTTTCCGGGATGTATTTTGAACTTCCTTTTGTGTACAATTGCATTGCGGGAAGGGGAAAGTTGAGAGACGACAGAAACCAAGAACCTGAGATACACAGAAACCGATTTGTTACCTGGGGCTGA

Coding sequence (CDS)

ATGGCCGATAGTTTCGAAGCTTCCATCGCGGTGGTTGAGCTCGGCAAAGTTGGAAATCCACTGTACACAAAAAAAAAAAAAAAAATAGAGAAAATCGGATACTTACCGGACCCGACCCGCCGTGGTTTTCAGGTCGACGGCGTTGTTCCTTCTCGGATTACAGCTTCAGAATCGTCCAACGTCTATCTACGACTACGGCCAAGATCTCACGTTCTCCATCAATGTTCTGGTTTAGTTTTATGCTGTCATTCTCTTTCCGGGATGTATTTTGAACTTCCTTTTGTGTACAATTGCATTGCGGGAAGGGGAAAGTTGAGAGACGACAGAAACCAAGAACCTGAGATACACAGAAACCGATTTGTTACCTGGGGCTGA

Protein sequence

MADSFEASIAVVELGKVGNPLYTKKKKKIEKIGYLPDPTRRGFQVDGVVPSRITASESSNVYLRLRPRSHVLHQCSGLVLCCHSLSGMYFELPFVYNCIAGRGKLRDDRNQEPEIHRNRFVTWG
Homology
[Close]
BLAST of CmaCh17G008710 vs. ExPASy TrEMBL
Match: A0A0A0K6X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432400 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.0e-13
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 0 

Query: 23  TKKKKKIEKIGYLPDPTRRGFQVDG----VVPSRITASESSNVYLRLRPRSHVLHQCSGL 82
           T+KK KI      P  TR    +      ++ S++    +S    +LRPRSH+LHQCSGL
Sbjct: 23  TEKKVKINLSNSDPYRTRPAVVLRSTAFILLGSQLQNRPASIGNWQLRPRSHLLHQCSGL 82

Query: 83  VLCCHSLSGMYFELPFVYNCIAGRGKLRDDRN 111
             CCH LSG YFELPF YNC+ GRGKL ++ N
Sbjct: 83  FFCCHFLSGNYFELPFAYNCVPGRGKLTNEMN 114

[Close]
BLAST of CmaCh17G008710 vs. NCBI nr
Match: KGN45258.1 (hypothetical protein Csa_016845 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-12
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 0 

Query: 23  TKKKKKIEKIGYLPDPTRRGFQVDG----VVPSRITASESSNVYLRLRPRSHVLHQCSGL 82
           T+KK KI      P  TR    +      ++ S++    +S    +LRPRSH+LHQCSGL
Sbjct: 23  TEKKVKINLSNSDPYRTRPAVVLRSTAFILLGSQLQNRPASIGNWQLRPRSHLLHQCSGL 82

Query: 83  VLCCHSLSGMYFELPFVYNCIAGRGKLRDDRN 111
             CCH LSG YFELPF YNC+ GRGKL ++ N
Sbjct: 83  FFCCHFLSGNYFELPFAYNCVPGRGKLTNEMN 114

The following BLAST results are available for this feature:
BLAST of CmaCh17G008710 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh17G008710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6X35.0e-1347.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432400 PE=4 SV=1[more]
BLAST of CmaCh17G008710 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45258.11.0e-1247.83hypothetical protein Csa_016845 [Cucumis sativus][more]
BLAST of CmaCh17G008710 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G008710.1CmaCh17G008710.1mRNA