CmaCh17G008620 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G008620
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	methyl-CpG-binding domain-containing protein 11-like
Location	Cma_Chr17: 6641335 .. 6641729 (+)
RNA-Seq Expression	CmaCh17G008620
Synteny	CmaCh17G008620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGTAGCACCCATGAGCGAGGAGATCAGGAATAGAAAACAGCTTGAGCAGTACTTGAAATCGCATTCTGAAGACGTTGCAGTATCGGATTTTGATTGGAGTACTGGTGAAACACCCAGGAGATCTGCTAGGATTAGTGAGAAGGCAAAGCAACTCCACAGCAGGAAGAGCCTCCAAGGAAACGAGTGAGATAATCTCCAAGTTCAAAAAAGAAGGAACACAAAGAAGCAGAGAAAGGTATTGATTCATGCTGTATGAAACAGGAAAAGGCCGACGTTTGTAATATTGAGGAAAATGGGGCTGCTGGACAAGAGAATTGCAGTAGAACTGAAAAAACACCAGCTTCCGATGGGACGATCACAGAAAAGGTAGACACACAAAGCACGACGTAA

mRNA sequence

ATGTTCGTAGCACCCATGAGCGAGGAGATCAGGAATAGAAAACAGCTTGAGCAGTACTTGAAATCGCATTCTGAAGACGTTGCAGTATCGGATTTTGATTGGAGTACTGGTGAAACACCCAGGAGATCTGCTAGGATTAGTGAGAAGGCAAAGCAACTCCACAGCAGGAAGAGCCTCCAAGGAAACGATTCAAAAAAGAAGGAACACAAAGAAGCAGAGAAAGGTATTGATTCATGCTGTATGAAACAGGAAAAGGCCGACGTTTGTAATATTGAGGAAAATGGGGCTGCTGGACAAGAGAATTGCAGTAGAACTGAAAAAACACCAGCTTCCGATGGGACGATCACAGAAAAGGTAGACACACAAAGCACGACGTAA

Coding sequence (CDS)

ATGTTCGTAGCACCCATGAGCGAGGAGATCAGGAATAGAAAACAGCTTGAGCAGTACTTGAAATCGCATTCTGAAGACGTTGCAGTATCGGATTTTGATTGGAGTACTGGTGAAACACCCAGGAGATCTGCTAGGATTAGTGAGAAGGCAAAGCAACTCCACAGCAGGAAGAGCCTCCAAGGAAACGATTCAAAAAAGAAGGAACACAAAGAAGCAGAGAAAGGTATTGATTCATGCTGTATGAAACAGGAAAAGGCCGACGTTTGTAATATTGAGGAAAATGGGGCTGCTGGACAAGAGAATTGCAGTAGAACTGAAAAAACACCAGCTTCCGATGGGACGATCACAGAAAAGGTAGACACACAAAGCACGACGTAA

Protein sequence

MFVAPMSEEIRNRKQLEQYLKSHSEDVAVSDFDWSTGETPRRSARISEKAKQLHSRKSLQGNDSKKKEHKEAEKGIDSCCMKQEKADVCNIEENGAAGQENCSRTEKTPASDGTITEKVDTQSTT

Homology

[Close]

BLAST of CmaCh17G008620 vs. ExPASy Swiss-Prot
Match: Q9XI36 (Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=MBD10 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.6e-11
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 1   MFVAPMSEEIRNRKQLEQYLKSHSEDVAVSDFDWSTGETPRRSARISEKAKQLHSR---- 60
           +FVAP  EEI +RKQLEQYLK+H  +  +S+F+W+TGETPRRS+RIS+K K         
Sbjct: 36  VFVAPTGEEISSRKQLEQYLKAHPGNPVISEFEWTTGETPRRSSRISQKVKATTPTPDKE 95

Query: 61  ---KSLQGNDSKKKEHKEAEKGIDSCCMKQEKADVCNIEENGAAGQE 101
              K  + + +KK   + AEK  ++   +    D     EN  A +E
Sbjct: 96  PLLKKRRSSLTKKDNKEAAEKNEEAAVKENMDVDKDGKTENAEAEKE 142

[Close]

BLAST of CmaCh17G008620 vs. ExPASy Swiss-Prot
Match: Q9LW00 (Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 GN=MBD11 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.9e-11
Identity = 55/125 (44.00%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 1   MFVAPMSEEIRNRKQLEQYLKSHSEDVAVSDFDWSTGETPRRSARISEKAKQLHS----R 60
           +FVAP  EEI NRKQLEQYLKSH  + A+++FDW+T  TPRRSARISEK K   S     
Sbjct: 36  VFVAPTGEEISNRKQLEQYLKSHPGNPAIAEFDWTTSGTPRRSARISEKTKATPSPDKEP 95

Query: 61  KSLQGNDSKKKEHKEAEKGIDSCCMKQEKADVCNIEENGAAG-QENCSRTEKTPASDGTI 120
              +G        K+AE G  S    +E + V + E N   G  EN + T+K  + +   
Sbjct: 96  PKKRGRTKSPVSKKDAE-GEKSEGGGEENSHVKDTEMNPPEGIAENENVTDKNGSGE--- 155

[Close]

BLAST of CmaCh17G008620 vs. ExPASy TrEMBL
Match: A0A6J1DJ04 (methyl-CpG-binding domain-containing protein 11-like OS=Momordica charantia OX=3673 GN=LOC111020477 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.1e-15
Identity = 59/127 (46.46%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   MFVAPMSEEIRNRKQLEQYLKSHSEDVAVSDFDWSTGETPRRSARISEKAK------QLH 60
           +FVAP  EEI  RKQLEQYLKSH   VA+SDFDWSTGETPRRSARISEKAK      +  
Sbjct: 55  VFVAPTGEEISTRKQLEQYLKSHPGHVAISDFDWSTGETPRRSARISEKAKAXPPQEEPS 114

Query: 61  SRKSLQGNDSKKKEHKEAEKGIDSCCMKQEKADVCNIEENGAAGQENCSRTEKTPASDGT 120
            +++ +   SKKKEH E EKG +   +K   A++          ++  S+ E+    D T
Sbjct: 115 RKRARRSPGSKKKEHNEMEKGAEETDIKD--AEMSEKVHAETEKEKEDSKDEEPKNEDET 174

Query: 121 ITEKVDT 122
             ++++T
Sbjct: 175 KEKEIET 179

[Close]

BLAST of CmaCh17G008620 vs. ExPASy TrEMBL
Match: A0A1S4E3V1 (methyl-CpG-binding domain-containing protein 11 OS=Cucumis melo OX=3656 GN=LOC103500017 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.3e-15
Identity = 59/129 (45.74%), Postives = 79/129 (61.24%), Query Frame = 0


Query: 1   MFVAPMSEEIRNRKQLEQYLKSHSEDVAVSDFDWSTGETPRRSARISEKAK------QLH 60
           +F+AP  EEI NRKQLEQYLKSH  D+ +SDFDWSTGETPRRS RISEKAK      +  
Sbjct: 29  VFIAPTGEEISNRKQLEQYLKSHPGDITLSDFDWSTGETPRRSTRISEKAKATPPQEEPP 88

Query: 61  SRKSLQGNDSKKKEHKEAEK--GIDSCCMKQEKADVCNIEENGAAGQENCSRTEKTPASD 120
            +++ +   SKKKEH E EK  G   C +K  +      E++ A  +   S+ E+    D
Sbjct: 89  KKRARKSPGSKKKEHNETEKSDGEKECKIKDAEMS----EKDNAERENENSKDEEPNKED 148

Query: 121 GTITEKVDT 122
            T  ++++T
Sbjct: 149 ETKRKELET 153

[Close]

BLAST of CmaCh17G008620 vs. ExPASy TrEMBL
Match: A0A5A7US65 (Methyl-CpG-binding domain-containing protein 11 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002000 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.0e-15
Identity = 59/129 (45.74%), Postives = 79/129 (61.24%), Query Frame = 0


Query: 1   MFVAPMSEEIRNRKQLEQYLKSHSEDVAVSDFDWSTGETPRRSARISEKAK------QLH 60
           +F+AP  EEI NRKQLEQYLKSH  D+ +SDFDWSTGETPRRS RISEKAK      +  
Sbjct: 52  VFIAPTGEEISNRKQLEQYLKSHPGDITLSDFDWSTGETPRRSTRISEKAKATPPQEEPP 111

Query: 61  SRKSLQGNDSKKKEHKEAEK--GIDSCCMKQEKADVCNIEENGAAGQENCSRTEKTPASD 120
            +++ +   SKKKEH E EK  G   C +K  +      E++ A  +   S+ E+    D
Sbjct: 112 KKRARKSPGSKKKEHNETEKSDGGKECKIKDAEMS----EKDNAERENENSKDEEPNKED 171

Query: 121 GTITEKVDT 122
            T  ++++T
Sbjct: 172 ETKRKELET 176

[Close]

BLAST of CmaCh17G008620 vs. ExPASy TrEMBL
Match: A0A6J1KVX9 (methyl-CpG-binding domain-containing protein 11-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111497674 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.0e-15
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1   MFVAPMSEEIRNRKQLEQYLKSHSEDVAVSDFDWSTGETPRRSARISEKAKQL------- 60
           +F+AP  EEI NRKQLEQYLKSHS DVA+SDFDWSTGETPRRSARISEKAK         
Sbjct: 53  IFIAPTGEEISNRKQLEQYLKSHSVDVALSDFDWSTGETPRRSARISEKAKTTPPPQEDP 112

Query: 61  HSRKSLQGNDSKKKEHKEAE 74
             +++ +   SKKKE K +E
Sbjct: 113 PRKRARKSPGSKKKEAKNSE 132

[Close]

BLAST of CmaCh17G008620 vs. ExPASy TrEMBL
Match: A0A6J1KZ45 (methyl-CpG-binding domain-containing protein 11-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111497674 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.0e-15
Identity = 51/80 (63.75%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 1   MFVAPMSEEIRNRKQLEQYLKSHSEDVAVSDFDWSTGETPRRSARISEKAKQL------- 60
           +F+AP  EEI NRKQLEQYLKSHS DVA+SDFDWSTGETPRRSARISEKAK         
Sbjct: 53  IFIAPTGEEISNRKQLEQYLKSHSVDVALSDFDWSTGETPRRSARISEKAKTTPPPQEDP 112

Query: 61  HSRKSLQGNDSKKKEHKEAE 74
             +++ +   SKKKE K +E
Sbjct: 113 PRKRARKSPGSKKKEAKNSE 132

[Close]

BLAST of CmaCh17G008620 vs. NCBI nr
Match: KAG6575596.1 (Methyl-CpG-binding domain-containing protein 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MFVAPMSEEIRNRKQLEQYLKSHSEDVAVSDFDWSTGETPRRSARISEKAKQLHSRKSLQ 60
          MFVAP  EEI NRKQLEQYLKSHSEDVAVSDFDWSTG TPRRSARISEKAKQLH RKSL 
Sbjct: 1  MFVAPTGEEISNRKQLEQYLKSHSEDVAVSDFDWSTGVTPRRSARISEKAKQLHHRKSLH 60

Query: 61 GNDSKK 67
          GN+ ++
Sbjct: 61 GNEKRQ 66

[Close]

BLAST of CmaCh17G008620 vs. NCBI nr
Match: XP_023514327.1 (methyl-CpG-binding domain-containing protein 11-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-15
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1   MFVAPMSEEIRNRKQLEQYLKSHSEDVAVSDFDWSTGETPRRSARISEKAK-------QL 60
           +F+AP  EEIRNRKQLEQYLKSHS DVA+SDFDWSTGETPRRSARISEKAK         
Sbjct: 53  IFIAPTGEEIRNRKQLEQYLKSHSVDVALSDFDWSTGETPRRSARISEKAKTTPPPQEDA 112

Query: 61  HSRKSLQGNDSKKKEHKEAE 74
             +++ +   SKKKE K +E
Sbjct: 113 PRKRARKSPGSKKKEAKNSE 132

[Close]

BLAST of CmaCh17G008620 vs. NCBI nr
Match: XP_023514328.1 (methyl-CpG-binding domain-containing protein 11-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-15
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1   MFVAPMSEEIRNRKQLEQYLKSHSEDVAVSDFDWSTGETPRRSARISEKAK-------QL 60
           +F+AP  EEIRNRKQLEQYLKSHS DVA+SDFDWSTGETPRRSARISEKAK         
Sbjct: 53  IFIAPTGEEIRNRKQLEQYLKSHSVDVALSDFDWSTGETPRRSARISEKAKTTPPPQEDA 112

Query: 61  HSRKSLQGNDSKKKEHKEAE 74
             +++ +   SKKKE K +E
Sbjct: 113 PRKRARKSPGSKKKEAKNSE 132

[Close]

BLAST of CmaCh17G008620 vs. NCBI nr
Match: XP_023514329.1 (methyl-CpG-binding domain-containing protein 11-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-15
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 1   MFVAPMSEEIRNRKQLEQYLKSHSEDVAVSDFDWSTGETPRRSARISEKAK-------QL 60
           +F+AP  EEIRNRKQLEQYLKSHS DVA+SDFDWSTGETPRRSARISEKAK         
Sbjct: 53  IFIAPTGEEIRNRKQLEQYLKSHSVDVALSDFDWSTGETPRRSARISEKAKTTPPPQEDA 112

Query: 61  HSRKSLQGNDSKKKEHKEAE 74
             +++ +   SKKKE K +E
Sbjct: 113 PRKRARKSPGSKKKEAKNSE 132

[Close]

BLAST of CmaCh17G008620 vs. NCBI nr
Match: XP_022152856.1 (methyl-CpG-binding domain-containing protein 11-like [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 8.5e-15
Identity = 59/127 (46.46%), Postives = 78/127 (61.42%), Query Frame = 0


Query: 1   MFVAPMSEEIRNRKQLEQYLKSHSEDVAVSDFDWSTGETPRRSARISEKAK------QLH 60
           +FVAP  EEI  RKQLEQYLKSH   VA+SDFDWSTGETPRRSARISEKAK      +  
Sbjct: 55  VFVAPTGEEISTRKQLEQYLKSHPGHVAISDFDWSTGETPRRSARISEKAKAXPPQEEPS 114

Query: 61  SRKSLQGNDSKKKEHKEAEKGIDSCCMKQEKADVCNIEENGAAGQENCSRTEKTPASDGT 120
            +++ +   SKKKEH E EKG +   +K   A++          ++  S+ E+    D T
Sbjct: 115 RKRARRSPGSKKKEHNEMEKGAEETDIKD--AEMSEKVHAETEKEKEDSKDEEPKNEDET 174

Query: 121 ITEKVDT 122
             ++++T
Sbjct: 175 KEKEIET 179

[Close]

BLAST of CmaCh17G008620 vs. TAIR 10
Match: AT1G15340.1 (methyl-CPG-binding domain 10 )

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-12
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 1   MFVAPMSEEIRNRKQLEQYLKSHSEDVAVSDFDWSTGETPRRSARISEKAKQLHSR---- 60
           +FVAP  EEI +RKQLEQYLK+H  +  +S+F+W+TGETPRRS+RIS+K K         
Sbjct: 36  VFVAPTGEEISSRKQLEQYLKAHPGNPVISEFEWTTGETPRRSSRISQKVKATTPTPDKE 95

Query: 61  ---KSLQGNDSKKKEHKEAEKGIDSCCMKQEKADVCNIEENGAAGQE 101
              K  + + +KK   + AEK  ++   +    D     EN  A +E
Sbjct: 96  PLLKKRRSSLTKKDNKEAAEKNEEAAVKENMDVDKDGKTENAEAEKE 142

[Close]

BLAST of CmaCh17G008620 vs. TAIR 10
Match: AT3G15790.1 (methyl-CPG-binding domain 11 )

HSP 1 Score: 68.6 bits (166), Expect = 4.2e-12
Identity = 55/125 (44.00%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 1   MFVAPMSEEIRNRKQLEQYLKSHSEDVAVSDFDWSTGETPRRSARISEKAKQLHS----R 60
           +FVAP  EEI NRKQLEQYLKSH  + A+++FDW+T  TPRRSARISEK K   S     
Sbjct: 36  VFVAPTGEEISNRKQLEQYLKSHPGNPAIAEFDWTTSGTPRRSARISEKTKATPSPDKEP 95

Query: 61  KSLQGNDSKKKEHKEAEKGIDSCCMKQEKADVCNIEENGAAG-QENCSRTEKTPASDGTI 120
              +G        K+AE G  S    +E + V + E N   G  EN + T+K  + +   
Sbjct: 96  PKKRGRTKSPVSKKDAE-GEKSEGGGEENSHVKDTEMNPPEGIAENENVTDKNGSGE--- 155

The following BLAST results are available for this feature:

BLAST of CmaCh17G008620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI36	2.6e-11	41.12	Methyl-CpG-binding domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LW00	5.9e-11	44.00	Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmaCh17G008620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJ04	4.1e-15	46.46	methyl-CpG-binding domain-containing protein 11-like OS=Momordica charantia OX=3...	[more]
A0A1S4E3V1	5.3e-15	45.74	methyl-CpG-binding domain-containing protein 11 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7US65	7.0e-15	45.74	Methyl-CpG-binding domain-containing protein 11 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6J1KVX9	7.0e-15	63.75	methyl-CpG-binding domain-containing protein 11-like isoform X4 OS=Cucurbita max...	[more]
A0A6J1KZ45	7.0e-15	63.75	methyl-CpG-binding domain-containing protein 11-like isoform X3 OS=Cucurbita max...	[more]

BLAST of CmaCh17G008620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575596.1	1.0e-20	84.85	Methyl-CpG-binding domain-containing protein 11, partial [Cucurbita argyrosperma...	[more]
XP_023514327.1	2.2e-15	65.00	methyl-CpG-binding domain-containing protein 11-like isoform X1 [Cucurbita pepo ...	[more]
XP_023514328.1	2.2e-15	65.00	methyl-CpG-binding domain-containing protein 11-like isoform X2 [Cucurbita pepo ...	[more]
XP_023514329.1	2.2e-15	65.00	methyl-CpG-binding domain-containing protein 11-like isoform X3 [Cucurbita pepo ...	[more]
XP_022152856.1	8.5e-15	46.46	methyl-CpG-binding domain-containing protein 11-like [Momordica charantia]	[more]

BLAST of CmaCh17G008620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15340.1	1.9e-12	41.12	methyl-CPG-binding domain 10	[more]
AT3G15790.1	4.2e-12	44.00	methyl-CPG-binding domain 11	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.890.10		coord: 1..76 e-value: 9.8E-6 score: 27.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..125
IPR039622	Methyl-CpG-binding domain-containing protein 10/11	PANTHER	PTHR33729	METHYL-CPG BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED	coord: 1..97
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 1..39 score: 9.428596
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 2..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G008620.1	CmaCh17G008620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding