CmaCh17G008590 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh17G008590
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr17: 6631723 .. 6633720 (+)
RNA-Seq ExpressionCmaCh17G008590
SyntenyCmaCh17G008590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCGGAGTTGATGCTTCCATGCTCGGCTAATGGCAACGTTCTCAAGCTCTCTGCAACATTCTTCACAGTTCGTTACCGCCTTTCCTCTCTGTTCATGCTTCCATACTCGGCTGGTAACCGTCTTCTCTTCGCGTCGTCGCCGTCTTTCGCTTCCTTATGCTCTTCTTCGATCCTTGAGTTGCATCCGCCGTGTGTAGCGCAGCAATACGGCGGCCACCAGACTCCGATCCGCCTTCCGAGAAGGATCCGTTCGTCTAATAGGTTCCTTTCGTTGCTGATGTTATCTCCATTTTATTTGCTTAATGGGATGGATTTCTTGTGATAAGGCCTAAAAATTTTAGTGCATAGAAATAGTCTCGTCATAACTTATTTCTAGCGCTTTTGCACCGTAGGTGGAGAAGTCTGAGTTATCCTTGTTTCTATGGAAAGGTCTGCATAATCGAAAATGAAAATTATCAGCTCATGAATTTAGCTCGCCTTGTGCTAGTGGTCGTCATCGCTAGATACAATTAATAACAATGTTATTTATCCATTTTGATTTCTGGTAGTTTAGAAGTTAATCATCCATAAATATTGTTCGGATTTTTAGTCATCCGGAAATTTGTTAGGCCTTCGGATGCATATGTGCTTAGCCATAATATTAGCTTATGTTTTATTTGGAAAGTTTGTTAGGTAGGAAATTTTGCTCAATACGTTTTAAATATGTCGTAAATCATACCGGAAAAAAATTATCGCATTTGGAGCGTGCGATTCTGATGCATGTGCAGCTACTCTTTGGAATTTCTCATTTAGTATGTGAGCAGAGCAAATGCCAATTATGAAGAAATTCGTAAACTAAATCTGAGTATCCATGTTTAGCTGTAAGTGGAAAGGCATTTTCCGCATCCATGACAGTTGTTTTATTGGAAGAGTAATGGCTGTTTTTAGGATTCAAATTCAGTTCCGCGTGTAAGATGAAGGAAGAGTGTATTCTATTCTAGCCCCTTATATAGCTGCTGGCGATTTTTGGTCTTTAAAGGTGATAAATCACAATTCCGCCCAAATGTTCTAGCTGTTAAGCTTGGATAACGTAATTTTCTATTCAATTCATTTTCTAGAACTCTCTTCCGATTGTTGGCCAAATATTCATTTTTTGTTCATGATACCTAACATGTGGTCTTTTAATACGAAATGGGATGGTGGTGATATGAGAGTTATCTAGCTTTTCTACCTTAAATTGGTATACTTCTTCCGAACTGTTTTGTGAATGTAGCTCCCTGAGTATGGCAAATTTGAATGTTTGCTGCAATTTTCTTGCAATTCTAGGAGATTGTTTATCTTCATCTTTTCTAATAATCTTTTAATAATGAATTTAGTGTTTTGTTTAATAAAAAAAGAATGGAGAGACAGAGAAAGTGAAGGAACAGGAAGTGCCTTTTATTAGTTGTTCTTGAGTATCATTTTAGAGTGAATACGTGACCAAAGTAGATAAGGTTATTGTTGAATTGGTAACAATGAATCACGGAAGCATGACTGTGGATGCACAAAACTCGAAACAGTTTGGCAAGAATTAAGTGAGTAGCGACCAGTTCAAGAATGCTCCTGTGGAGTCTTACAAGCTTTGTTGATCATTTGGAATTTGAATTCGTACTGATTTTCTGATGGGTCTTAATGAGATTTGTACGACTAATTCGTGCACAAATTATTGTAATGAATCCTCGTTTGTCCATGACTAAAGTTTTCTCACTTTTGCAGGGAATGTTAGTCCTTCAGATCCTATTGCGTTAATTGCTGCTGCTGCTGCTGCTAAAAGAGATCTGCCAATGAAAATCATGGAAGAAAGGGACTCAACGCTCTGTTTGCAAAATCCGTTCACAGTCCAACTTTCTGACCAGCCTTAATACTAATCAATTCACACAGCTAATGGAGATGGGTTGAAGATGGTTGGGAGGGATTCTGATGTTGGCTAACTAAGGAGATATTATGAATTTATAAATAAGGAATATATTTTTAA

mRNA sequence

ATGGAATCGGAGTTGATGCTTCCATGCTCGGCTAATGGCAACGTTCTCAAGCTCTCTGCAACATTCTTCACAGTTCGTTACCGCCTTTCCTCTCTGTTCATGCTTCCATACTCGGCTGGTAACCGTCTTCTCTTCGCGTCGTCGCCGTCTTTCGCTTCCTTATGCTCTTCTTCGATCCTTGAGTTGCATCCGCCGTGTGTAGCGCAGCAATACGGCGGCCACCAGACTCCGATCCGCCTTCCGAGAAGGATCCGTTCGTCTAATAGGGAATGTTAGTCCTTCAGATCCTATTGCGTTAATTGCTGCTGCTGCTGCTGCTAAAAGAGATCTGCCAATGAAAATCATGGAAGAAAGGGACTCAACGCTCTGTTTGCAAAATCCGTTCACAGTCCAACTTTCTGACCAGCCTTAATACTAATCAATTCACACAGCTAATGGAGATGGGTTGAAGATGGTTGGGAGGGATTCTGATGTTGGCTAACTAAGGAGATATTATGAATTTATAAATAAGGAATATATTTTTAA

Coding sequence (CDS)

ATGGAATCGGAGTTGATGCTTCCATGCTCGGCTAATGGCAACGTTCTCAAGCTCTCTGCAACATTCTTCACAGTTCGTTACCGCCTTTCCTCTCTGTTCATGCTTCCATACTCGGCTGGTAACCGTCTTCTCTTCGCGTCGTCGCCGTCTTTCGCTTCCTTATGCTCTTCTTCGATCCTTGAGTTGCATCCGCCGTGTGTAGCGCAGCAATACGGCGGCCACCAGACTCCGATCCGCCTTCCGAGAAGGATCCGTTCGTCTAATAGGGAATGTTAG

Protein sequence

MESELMLPCSANGNVLKLSATFFTVRYRLSSLFMLPYSAGNRLLFASSPSFASLCSSSILELHPPCVAQQYGGHQTPIRLPRRIRSSNREC
Homology
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BLAST of CmaCh17G008590 vs. NCBI nr
Match: KAG7014136.1 (hypothetical protein SDJN02_24309, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.5 bits (158), Expect = 2.8e-07
Identity = 35/56 (62.50%), Postives = 40/56 (71.43%), Query Frame = 0 

Query: 43  LLFASSPSFASLCSSSI---------LELHPPCVAQQYGGHQTPIRLPRRIRSSNR 90
           +L +S P F S+ +S +         LELHPPCVAQQYGGHQTPIRLPRRI SSNR
Sbjct: 106 ILHSSFPPFLSVHASILGWKSASLRFLELHPPCVAQQYGGHQTPIRLPRRICSSNR 161

The following BLAST results are available for this feature:
BLAST of CmaCh17G008590 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh17G008590 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh17G008590 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014136.12.8e-0762.50hypothetical protein SDJN02_24309, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh17G008590 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G008590.1CmaCh17G008590.1mRNA