CmaCh17G008560 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh17G008560
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionphospholipase D alpha 1
LocationCma_Chr17: 6619325 .. 6620582 (+)
RNA-Seq ExpressionCmaCh17G008560
SyntenyCmaCh17G008560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTTTCTGATCTGTGGATGGAGCTGAGTTTGGGACAAATAGGAAAATTAGAACCGCTTGAATTCTGTTCGGAAACAACTACGAATGTTTTCCTCTGCCTAACATGTTGCTTTTGTGATGAGATGTTGAACTAGCTGTGTGACAAGGTTGGAAGGTCTCTTTGTATCAAGATGCTCATATTCCTGATAATTTTATTCCTACAATACCTCTTTCTGGAGGAAAAGATTTTGCTCCCCCAAATGTTGGGAAATATTTTTGATGCGATACAAAATGCTAAACACCTGATTTACATCACAGGATGATCTGTTTATACAGAAATTGCCTTGGTAATGGACTCAAGAAGGCCAAAGCCTGGAGGAGACATTATGCTTGGTGAACTGCTTGAGAAGAAAGTAAGTGATGGTATCAGAGTTTTTATGCTTGTGTGGGATCACAGAACATCAGACGGTTTACTAAAAAAGATGGTTTGATGGCCACCCATGATGAAGAAATTGAAAGTTATTAGGATTCTTGGAGTCCACGGGCTAATTGAGGGGAAGATCATGCACATGAGTAAGGGACACTATTTCTATCGGTGCAAGACCTTTTGGAGAAACTAAAAATAAGGTCAGCAAAATGGATAAATCATACCATTGTGGAGTTTCTTTGCTCCTGTCTCTGATATCAAAATCTTGCTCTTATCTTAACTTAGACATGTTAAAAGCATTCTCAAATATGTGAGCCTCAAACGTGTGGTCAGAGTGAAGATTCGTGATAGAGTTTTATTGGGCTAGCAATGTGCTCAAGAGAAGAGGAATCATAAGATAGTGTACTTTGTTTGAGGGGAAGAATCGTGTGTATACGGAAACCAAAAGTAAAGCTGCGAGAGGTTATGTTACCCCATATGATAGATTGGTAAGCAATGTTCATATATCTCAGATTTGTGTAGTTTGATTAACATTAACTTCCAAGGCGCATGGCTTAATCTTTATTCCTGATCATCTACGTACTGAAATAATATGCCTTCATTGTTGAAACACCACGCTAGATGATTTACCAAGGAAGCAGACAGTAAGTATCAGGAAAAGATAAGTGTCACGTGGAACACAGAAGTTTTTTAACTGCATAACTACGAGTTCCTTTTGTTTTCTGAGCATGTTTTTATATTGAAACAATGGAGTTAAAACATCTACTGCAGTTGATGATGAGTACATAATTGTTGGATCGGCCAATATCAACCAGAGATCCATGGATGGTGCAAGCAAGGGACTCTGA

mRNA sequence

ATGGAGTTTTCTGATCTGTGGATGGAGCTGAAAATTGCCTTGGTAATGGACTCAAGAAGGCCAAAGCCTGGAGGAGACATTATGCTTGGTGAACTGCTTGAGAAGAAAGTAAGTGATGTTGATGATGAGTACATAATTGTTGGATCGGCCAATATCAACCAGAGATCCATGGATGGTGCAAGCAAGGGACTCTGA

Coding sequence (CDS)

ATGGAGTTTTCTGATCTGTGGATGGAGCTGAAAATTGCCTTGGTAATGGACTCAAGAAGGCCAAAGCCTGGAGGAGACATTATGCTTGGTGAACTGCTTGAGAAGAAAGTAAGTGATGTTGATGATGAGTACATAATTGTTGGATCGGCCAATATCAACCAGAGATCCATGGATGGTGCAAGCAAGGGACTCTGA

Protein sequence

MEFSDLWMELKIALVMDSRRPKPGGDIMLGELLEKKVSDVDDEYIIVGSANINQRSMDGASKGL
Homology
[Close]
BLAST of CmaCh17G008560 vs. ExPASy Swiss-Prot
Match: P55939 (Phospholipase D alpha 2 OS=Brassica oleracea var. capitata OX=3716 GN=PLD2 PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 2.5e-05
Identity = 27/50 (54.00%), Postives = 31/50 (62.00%), Query Frame = 0 

Query: 18  SRRPKPGGDIMLGE-------LLEKKVSDVDDEYIIVGSANINQRSMDGA 61
           + RP P  D M  +        +  K+  VDDEYIIVGSANINQRSMDGA
Sbjct: 640 AERPDPDTDYMRAQEARRFMIYVHSKMMIVDDEYIIVGSANINQRSMDGA 689

[Close]
BLAST of CmaCh17G008560 vs. ExPASy Swiss-Prot
Match: Q38882 (Phospholipase D alpha 1 OS=Arabidopsis thaliana OX=3702 GN=PLDALPHA1 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 3.2e-05
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 11  KIALVMDSRRPKPGGDIMLGELLEKKVSD 40
           +IALV DSRRPKPGGD+ +GELL+KK S+
Sbjct: 236 EIALVRDSRRPKPGGDVTIGELLKKKASE 264

[Close]
BLAST of CmaCh17G008560 vs. ExPASy Swiss-Prot
Match: O82549 (Phospholipase D alpha 1 OS=Brassica oleracea var. capitata OX=3716 GN=PLD1 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.2e-05
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 11  KIALVMDSRRPKPGGDIMLGELLEKKVSD 40
           +IALV DSRRPKPGGD+ +GELL+KK S+
Sbjct: 236 EIALVRDSRRPKPGGDVTVGELLKKKASE 264

[Close]
BLAST of CmaCh17G008560 vs. ExPASy Swiss-Prot
Match: Q41142 (Phospholipase D alpha 1 OS=Ricinus communis OX=3988 GN=PLD1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.2e-05
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 11  KIALVMDSRRPKPGGDIMLGELLEKKVSD 40
           +I+L+ DSRRPKPGGDI LGELL+KK S+
Sbjct: 235 EISLIRDSRRPKPGGDITLGELLKKKASE 263

[Close]
BLAST of CmaCh17G008560 vs. ExPASy Swiss-Prot
Match: P93400 (Phospholipase D alpha 1 OS=Nicotiana tabacum OX=4097 GN=PLD1 PE=2 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 5.5e-05
Identity = 26/50 (52.00%), Postives = 31/50 (62.00%), Query Frame = 0 

Query: 18  SRRPKPGGDIMLGE-------LLEKKVSDVDDEYIIVGSANINQRSMDGA 61
           S  P+P  D +  +        +  K+  VDDEYIIVGSANINQRSMDGA
Sbjct: 636 SETPEPDSDYIRAQEARRFMIYVHSKMMIVDDEYIIVGSANINQRSMDGA 685

[Close]
BLAST of CmaCh17G008560 vs. TAIR 10
Match: AT3G15730.1 (phospholipase D alpha 1 )

HSP 1 Score: 48.5 bits (114), Expect = 2.3e-06
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 11  KIALVMDSRRPKPGGDIMLGELLEKKVSD 40
           +IALV DSRRPKPGGD+ +GELL+KK S+
Sbjct: 236 EIALVRDSRRPKPGGDVTIGELLKKKASE 264

[Close]
BLAST of CmaCh17G008560 vs. TAIR 10
Match: AT1G52570.1 (phospholipase D alpha 2 )

HSP 1 Score: 47.4 bits (111), Expect = 5.1e-06
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 0 

Query: 18  SRRPKPGGDIMLGE-------LLEKKVSDVDDEYIIVGSANINQRSMDGA 61
           S +P+P  D +  +        +  K+  VDDEYII+GSANINQRSMDGA
Sbjct: 638 SEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGA 687

[Close]
BLAST of CmaCh17G008560 vs. TAIR 10
Match: AT5G25370.1 (phospholipase D alpha 3 )

HSP 1 Score: 43.9 bits (102), Expect = 5.7e-05
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 0 

Query: 33  LEKKVSDVDDEYIIVGSANINQRSMDG 60
           +  K+  VDDEYII+GSANINQRSMDG
Sbjct: 666 VHSKMMIVDDEYIIIGSANINQRSMDG 692

[Close]
BLAST of CmaCh17G008560 vs. TAIR 10
Match: AT1G55180.1 (phospholipase D alpha 4 )

HSP 1 Score: 40.8 bits (94), Expect = 4.8e-04
Identity = 18/27 (66.67%), Postives = 22/27 (81.48%), Query Frame = 0 

Query: 33  LEKKVSDVDDEYIIVGSANINQRSMDG 60
           +  K+  VDD YI++GSANINQRSMDG
Sbjct: 614 VHSKLMIVDDTYILIGSANINQRSMDG 640

[Close]
BLAST of CmaCh17G008560 vs. TAIR 10
Match: AT2G42010.1 (phospholipase D beta 1 )

HSP 1 Score: 40.4 bits (93), Expect = 6.2e-04
Identity = 16/20 (80.00%), Postives = 20/20 (100.00%), Query Frame = 0 

Query: 40  VDDEYIIVGSANINQRSMDG 60
           VDDEY+++GSANINQRSM+G
Sbjct: 940 VDDEYVVIGSANINQRSMEG 959

The following BLAST results are available for this feature:
BLAST of CmaCh17G008560 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P559392.5e-0554.00Phospholipase D alpha 2 OS=Brassica oleracea var. capitata OX=3716 GN=PLD2 PE=1 ... [more]
Q388823.2e-0572.41Phospholipase D alpha 1 OS=Arabidopsis thaliana OX=3702 GN=PLDALPHA1 PE=1 SV=2[more]
O825494.2e-0572.41Phospholipase D alpha 1 OS=Brassica oleracea var. capitata OX=3716 GN=PLD1 PE=2 ... [more]
Q411424.2e-0572.41Phospholipase D alpha 1 OS=Ricinus communis OX=3988 GN=PLD1 PE=1 SV=1[more]
P934005.5e-0552.00Phospholipase D alpha 1 OS=Nicotiana tabacum OX=4097 GN=PLD1 PE=2 SV=2[more]
BLAST of CmaCh17G008560 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G008560 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh17G008560 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G15730.12.3e-0672.41phospholipase D alpha 1 [more]
AT1G52570.15.1e-0650.00phospholipase D alpha 2 [more]
AT5G25370.15.7e-0574.07phospholipase D alpha 3 [more]
AT1G55180.14.8e-0466.67phospholipase D alpha 4 [more]
AT2G42010.16.2e-0480.00phospholipase D beta 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR18896:SF163BNAA01G28530D PROTEINcoord: 11..39
coord: 39..61
IPR015679Phospholipase D familyPANTHERPTHR18896PHOSPHOLIPASE Dcoord: 11..39
coord: 39..61
IPR001736Phospholipase D/TransphosphatidylasePROSITEPS50035PLDcoord: 29..56
score: 9.382799

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G008560.1CmaCh17G008560.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity