CmaCh17G008060 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh17G008060
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCma_Chr17: 6348052 .. 6350823 (-)
RNA-Seq ExpressionCmaCh17G008060
SyntenyCmaCh17G008060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAACAGCCGATTATAAATTTTTGGCAATCGCTAGACGTCAATTGGCGCGCTGGAGAGATCTCTGTGTGATCTCTTCGACGCGGGAGAGCCAATTTCTCAGCCATGTCGGCCAAGCGGTGAGTTATTTCCTTAGGGTTATGGAAAAATTTAGCGTTGTATTACTATTTCATCTCGGCTGTGGTACCATCGTTGTCTATGCTATGATTTATAATCTTCCTTTTTTTTTTACCGATTTAAATCGCGGTATGGAGAATCGGTCTTTGTAGGAGGGAAAGCAAAGGCTCTGAAGCATCCCACGGTTGATAAGAAAAATTACGACGAGGTATGCTTTGAATTTATTGTTTTATGGATCTTTGTTTTGGATGCAACTTTTGGGATCGAAGAATTTGAATCTGCATTACTTTTGTTGTTTGCTTGTGTGTTCTTGGGTAGAAATCACGATACTGGATTGTTTGTTCTTGTTCGTATAATTGGGGTGGGTTTGGGGGCGATACTGGATGGTTTGTTCTTACGCCTTAGGTGGAGTTTGCCATTTAAATAACGAATTGACAAGTCAAATGCCTCTTTTTTGGTCTCAATCTAACCAAGTAGAATGCGTCTCCACCTTGTGTTGTGCCCAAGGAGAGTTTCTTCATGTTCTTTGCAAATCTGTATTATTTGCTTCTTCTCCACTCGATCATCCCAATTCTTTTTATCTTCATCTCGGAAACATAAGACTAAAGCGGTTACTCTTATCATAACCTGGCTCTCATACCATTTGTAACGGTCCAAATGCATCGCTAGCAGATATTGTCCTCAGGCTTCCCTCAAGGTTTTTAAAAGGCGTCTGCTTGGGAGAGTTTTACACACCCTTGTAAAGGATGTTTCGCTTTTCTCCCCAATCGATGTAGGATCTCACAATCAAGAACAGCTCTCGGGCCTACTTTGGAGCAGTTGCCGGTATCTTACTTTGACTCTCTCGCTCAATCCTGCATTGTCCAAAAAGCGATAGGGCCTTGAATACAGCCTCACCCTCGTGTATGACAAATGGGTCTTAGTTGGCTACTAAATCTTTACGGCATCTGCAACTCTTTGACAAAGGCTCATCTCTTGTTCGATAGAATTTCCAAACAAAATTTGTTTATTTGGAATGTTATGATACGAGGTTATGATTGGAATGGACCATATGAGGTTTCGATTTCACTTTACCACCAAAATCAAAGCTATGTGCTTTTGCCTGATAATTTACCTTCCCATTTGTTCTCAAGCTTGCTCAGCTCTTTCTGCCATGGAAGAGGGAAAGAAGATTCACAAATGTAGGATTTATCATCCTGACAGATTGTTGATTGTAGAGACTTCAATGACATCAAATAGACTTTAACATGATGTCTTACGTACTGGGTTGGAGACTGATGTGTTTGTTGGTGCGGCCCTAACTGATAAGTATGCTGAATTCAATTGTGTAGAGACTGCTCGATAGGTGTTTAAAAAAATTGTTGAGGGATGTTGTGTTGGAACACTATGCTTGCAGCTTATTCTCAAAATGGGCAATCAGATGATTCACTTGCTATTTGCAAGGTGATGGCGTTTGTTGGGTGGGATGGAGATGTATTCCTTACTCATAAACCCAGGGTCATTCCCTAAATTAGCCAATGCGGGACTCCCTTCCAACAATCTTCAACCGGAGATACTTGTCGTCCCCATCTCAACTTTATCCGACAGATTCTTTCTTCCTCAAAGGAAGGAGCTTCATGTTTACTGTTGGAGACATGGATTTGAATCGAATGACAAGGTGAAAACTTCATTGGTGGATATGTATGCCAACAATGGCTCTATAAATGTTGCTAGGAGTTTGTTTGAGATGTTGGAGGGAAAGAGGATAGTCTCTTGGAAGAATGCCATGCTCACTGGGTGTGCAATGCATGGCCATGCGAATGAAGCTTTGGACTCGTTTGAGCAGTTGAATGGAAAAGCTCTACCTGATCTTATAACTTTTGTTGGAGTTCTCGTTGCTTGCACAGCCGTAGGGCTGCTTGATGAATGGAAAAAGTACTTCAGATCAATGGTAAGTAGACAATTGATCAGTCTCTACGCTTGTATGATTGATCTCCTTGGTCATTGTGGTCACTTGGAAGAAGTTTACAATCACATTATGGAAATGATTAGAGCCAGATGCTGGCATCTACGGTCTGTTGCTTCACTCGTTCAAAATACATGGCAATGTGGAGATGGGTGAGCTAGCATTAGAGAAGCTGATTGAGCTTGAATCCGATGATGACAGAAACTATATGGTTTTATCGAATATGTACACGCTCAAGCAGGTAAATGGGAAGGAGTTGCAAGACTAAGGGATCTCATGATGTGTAAAGGATTGTAGAAAAGTATTACTTGTAGTTGGATAGAAGTGAGAAACAAAGTTCATGCCTAGGGAAGTAATCTATGACGAGTTAAAATGGATAGGGAAGTAGATGAACGAAGCTGGATAAGCGCTGCAAATTGGGTACAGTTCCCTGCAACTCACATAACCCAACAATATTTGGTCCAACTAGTTAACGAGATCCATGACTTAACAAGAAAGGAAATATAACCAAATTTAGGAAGGAGATATATTCTAAAAGCTGTTGATATGAGGACAGTTTGAAGTAAAAACATAGCAGTGGCTTCACCTGGCCACCATCACCGAGACTGACATAGTACTCAATGAACAAATTTCCTGTGGTGGCTGTGCAGGCCGTATGAGCCGCCCACTGTCGACCACCTCCGGTTCAAGCTCCGACGAGTTTGGGTTTTGA

mRNA sequence

ATAACAGCCGATTATAAATTTTTGGCAATCGCTAGACGTCAATTGGCGCGCTGGAGAGATCTCTGTGTGATCTCTTCGACGCGGGAGAGCCAATTTCTCAGCCATGTCGGCCAAGCGGAGTTTGTTTGAGATGTTGGAGGGAAAGAGGATAGTCTCTTGGAAGAATGCCATGCTCACTGGGTGTGCAATGCATGGCCATGCGAATGAAGCTTTGGACTCGTTTGAGCAGTTGAATGGAAAAGCTCTACCTGATCTTATAACTTTTGTTGGAGTTCTCGTTGCTTGCACAGCCGTAGGGCTGCTTGATGAATGGAAAAAGTACTTCAGATCAATGCCAGATGCTGGCATCTACGGTCTGTTGCTTCACTCGTTCAAAATACATGGCAATGTGGAGATGGGTGAGCTAGCATTAGAGAAGCTGATTGAGCTTGAATCCGATGATGACAGAAACTATATGGTTTTATCGAATATGTACACGCTCAAGCAGTGGCTTCACCTGGCCACCATCACCGAGACTGACATAGTACTCAATGAACAAATTTCCTGTGGTGGCTGTGCAGGCCGTATGAGCCGCCCACTGTCGACCACCTCCGGTTCAAGCTCCGACGAGTTTGGGTTTTGA

Coding sequence (CDS)

ATGTCGGCCAAGCGGAGTTTGTTTGAGATGTTGGAGGGAAAGAGGATAGTCTCTTGGAAGAATGCCATGCTCACTGGGTGTGCAATGCATGGCCATGCGAATGAAGCTTTGGACTCGTTTGAGCAGTTGAATGGAAAAGCTCTACCTGATCTTATAACTTTTGTTGGAGTTCTCGTTGCTTGCACAGCCGTAGGGCTGCTTGATGAATGGAAAAAGTACTTCAGATCAATGCCAGATGCTGGCATCTACGGTCTGTTGCTTCACTCGTTCAAAATACATGGCAATGTGGAGATGGGTGAGCTAGCATTAGAGAAGCTGATTGAGCTTGAATCCGATGATGACAGAAACTATATGGTTTTATCGAATATGTACACGCTCAAGCAGTGGCTTCACCTGGCCACCATCACCGAGACTGACATAGTACTCAATGAACAAATTTCCTGTGGTGGCTGTGCAGGCCGTATGAGCCGCCCACTGTCGACCACCTCCGGTTCAAGCTCCGACGAGTTTGGGTTTTGA

Protein sequence

MSAKRSLFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKALPDLITFVGVLVACTAVGLLDEWKKYFRSMPDAGIYGLLLHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYTLKQWLHLATITETDIVLNEQISCGGCAGRMSRPLSTTSGSSSDEFGF
Homology
[Close]
BLAST of CmaCh17G008060 vs. ExPASy Swiss-Prot
Match: Q9M4P3 (Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DYW10 PE=2 SV=3)

HSP 1 Score: 93.6 bits (231), Expect = 2.4e-18
Identity = 58/170 (34.12%), Postives = 88/170 (51.76%), Query Frame = 0 

Query: 7   LFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSF-EQLNGKALPDLITFVGVLVACTAVG 66
           LFE+++ K +V+W NAM++G A HG+A++AL  F E ++ K  PD ITFV VL+AC   G
Sbjct: 341 LFEVMKKKDVVAW-NAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAG 400

Query: 67  LLDEWKKYFRSM---------------------------------------PDAGIYGLL 126
           L++    YF SM                                       P A ++G L
Sbjct: 401 LVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTL 460

Query: 127 LHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYTLK-QWLHLATI 136
           L + ++H NVE+ E A EKL++L S +   Y+ L+N+Y  K +W  +A +
Sbjct: 461 LGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARV 509

[Close]
BLAST of CmaCh17G008060 vs. ExPASy Swiss-Prot
Match: Q9LNU6 (Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H21 PE=2 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 5.2e-18
Identity = 60/184 (32.61%), Postives = 87/184 (47.28%), Query Frame = 0 

Query: 7   LFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKAL-PDLITFVGVLVACTAVG 66
           +F M+  K +V W N+++ G +MHG A E +  FE L    L PD I+F  +L AC  VG
Sbjct: 445 VFNMMPTKNLVCW-NSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVG 504

Query: 67  LLDEWKKYFRSM---------------------------------------PDAGIYGLL 126
           L DE  KYF+ M                                       PD+ ++G L
Sbjct: 505 LTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGAL 564

Query: 127 LHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYTLK-QWLHLATITETDIVLNEQ 150
           L+S ++  NV++ E+A EKL  LE ++   Y++LSN+Y  K  W      TE D + N+ 
Sbjct: 565 LNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMW------TEVDSIRNKM 621

[Close]
BLAST of CmaCh17G008060 vs. ExPASy Swiss-Prot
Match: Q9FRI5 (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.9e-16
Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 0 

Query: 5   RSLFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKAL-PDLITFVGVLVACTA 64
           R +F  +     VSW NA++     HGH  EA+D +E++  K + PD IT + VL AC+ 
Sbjct: 472 RQVFRTMPCLDSVSW-NALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSH 531

Query: 65  VGLLDEWKKYFRSM---------------------------------------PDAGIYG 124
            GL+D+ +KYF SM                                       P A I+ 
Sbjct: 532 AGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWE 591

Query: 125 LLLHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYTLK-QWLHLATITE--TDIV 149
            LL   ++HGN+E+G +A +KL  L  + D  YM+LSNM+    QW  +A + +   D  
Sbjct: 592 ALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRG 651

[Close]
BLAST of CmaCh17G008060 vs. ExPASy Swiss-Prot
Match: Q9SVP7 (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 4.9e-16
Identity = 53/157 (33.76%), Postives = 79/157 (50.32%), Query Frame = 0 

Query: 14  KRIVSWKNAMLTGCAMHGHANEALDSFEQ-LNGKALPDLITFVGVLVACTAVGLLDEWKK 73
           K  VSW NA++   + HG  +EALDSF+Q ++    P+ +T VGVL AC+ +GL+D+   
Sbjct: 756 KNEVSW-NAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIA 815

Query: 74  YFRSM---------------------------------------PDAGIYGLLLHSFKIH 130
           YF SM                                       PDA ++  LL +  +H
Sbjct: 816 YFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVH 875

[Close]
BLAST of CmaCh17G008060 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.4e-16
Identity = 52/158 (32.91%), Postives = 77/158 (48.73%), Query Frame = 0 

Query: 7   LFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKAL-PDLITFVGVLVACTAVG 66
           LF+ + GK IVSW N M+ G + HG    AL  FE +  + L PD  T V VL AC+  G
Sbjct: 466 LFKEMAGKDIVSW-NTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTG 525

Query: 67  LLDEWKKYFRSM---------------------------------------PDAGIYGLL 125
           L+D+ ++YF +M                                       PDA I+G L
Sbjct: 526 LVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTL 585

[Close]
BLAST of CmaCh17G008060 vs. ExPASy TrEMBL
Match: A0A0A0KAF0 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G446825 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 2.3e-37
Identity = 93/184 (50.54%), Postives = 116/184 (63.04%), Query Frame = 0 

Query: 1   MSAKRSLFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKALPDLITFVGVLVA 60
           ++  RSLFE+LE KR+VSW NAM+TG AMHGHANEALD F+++ GK LPD ITFVGVL A
Sbjct: 254 VNVARSLFELLEEKRVVSW-NAMITGYAMHGHANEALDLFKEMKGKVLPDHITFVGVLAA 313

Query: 61  CTAVGLLDEWKKYFRSM---------------------------------------PDAG 120
           C+  GLL+E K +FRSM                                       PDAG
Sbjct: 314 CSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAG 373

Query: 121 IYGLLLHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYT-LKQWLHLATITETDI 145
           ++G LLHS KIHGNVEMGELALEKL+ELE DD  NY++LSNMY    +W  +A +   D+
Sbjct: 374 VWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARL--RDL 433

[Close]
BLAST of CmaCh17G008060 vs. ExPASy TrEMBL
Match: A0A5A7UW41 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002330 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.6e-36
Identity = 94/190 (49.47%), Postives = 115/190 (60.53%), Query Frame = 0 

Query: 1   MSAKRSLFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKALPDLITFVGVLVA 60
           ++  R LFE+LE KR+VSW NAM+TG AMHGHANEALD F+++  K LPD ITFVGVL A
Sbjct: 322 VNVARILFELLEEKRVVSW-NAMITGYAMHGHANEALDLFKEMKAKVLPDHITFVGVLAA 381

Query: 61  CTAVGLLDEWKKYFRSM---------------------------------------PDAG 120
           C+  GLL+E K +FRSM                                       PDAG
Sbjct: 382 CSHGGLLNEGKMHFRSMISDFNICPTVQHYTCMIDLLGHCGCLEEAYKLIMEMRVEPDAG 441

Query: 121 IYGLLLHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYT-LKQWLHLATITE--T 149
           ++G LLHS KIHGNVEMGELALEKLIELE DD  NY++LSNMY    +W  +A + +   
Sbjct: 442 VWGALLHSCKIHGNVEMGELALEKLIELEPDDGGNYVILSNMYAQAGKWDGVARLRDFMM 501

[Close]
BLAST of CmaCh17G008060 vs. ExPASy TrEMBL
Match: A0A1S3CG77 (pentatricopeptide repeat-containing protein At4g21065-like OS=Cucumis melo OX=3656 GN=LOC103500579 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.6e-36
Identity = 94/190 (49.47%), Postives = 115/190 (60.53%), Query Frame = 0 

Query: 1   MSAKRSLFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKALPDLITFVGVLVA 60
           ++  R LFE+LE KR+VSW NAM+TG AMHGHANEALD F+++  K LPD ITFVGVL A
Sbjct: 322 VNVARILFELLEEKRVVSW-NAMITGYAMHGHANEALDLFKEMKAKVLPDHITFVGVLAA 381

Query: 61  CTAVGLLDEWKKYFRSM---------------------------------------PDAG 120
           C+  GLL+E K +FRSM                                       PDAG
Sbjct: 382 CSHGGLLNEGKMHFRSMISDFNICPTVQHYTCMIDLLGHCGCLEEAYKLIMEMRVEPDAG 441

Query: 121 IYGLLLHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYT-LKQWLHLATITE--T 149
           ++G LLHS KIHGNVEMGELALEKLIELE DD  NY++LSNMY    +W  +A + +   
Sbjct: 442 VWGALLHSCKIHGNVEMGELALEKLIELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMM 501

[Close]
BLAST of CmaCh17G008060 vs. ExPASy TrEMBL
Match: A0A6J1DBD3 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111018927 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.4e-36
Identity = 94/186 (50.54%), Postives = 111/186 (59.68%), Query Frame = 0 

Query: 5   RSLFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKALPDLITFVGVLVACTAV 64
           RSLFEML  KR+VSW N M+TG AMHGHA EALD FE++  KA+PD ITFVGVL AC+  
Sbjct: 310 RSLFEMLNKKRVVSW-NTMITGYAMHGHATEALDLFEEMKKKAMPDYITFVGVLAACSHG 369

Query: 65  GLLDEWKKYFRSM---------------------------------------PDAGIYGL 124
           GLLDE K YFRSM                                       PDAG++G 
Sbjct: 370 GLLDEGKMYFRSMVIDCLIDPTVQHYTCMIDLLGHCGHLEEAYNLIMEMRVEPDAGVWGA 429

Query: 125 LLHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYT-LKQWLHLATITE--TDIVL 149
           LLHS KIHGNVEMGELALEKL ELE DD  N+++LSNMY    +W  +A + +   D  L
Sbjct: 430 LLHSCKIHGNVEMGELALEKLSELEPDDGGNFVILSNMYAQAGKWEGVARMRDLMMDRGL 489

[Close]
BLAST of CmaCh17G008060 vs. ExPASy TrEMBL
Match: A0A6J1JVL2 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxima OX=3661 GN=LOC111488715 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 4.1e-34
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0 

Query: 1   MSAKRSLFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKALPDLITFVGVLVA 60
           ++  RSLFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKALPDLITFVGVLVA
Sbjct: 79  INVARSLFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKALPDLITFVGVLVA 138

Query: 61  CTAVGLLDEWKKYFRSM 78
           CTAVGLLDEWKKYFRSM
Sbjct: 139 CTAVGLLDEWKKYFRSM 155

[Close]
BLAST of CmaCh17G008060 vs. NCBI nr
Match: XP_038898350.1 (pentatricopeptide repeat-containing protein At4g21065-like [Benincasa hispida] >XP_038898351.1 pentatricopeptide repeat-containing protein At4g21065-like [Benincasa hispida])

HSP 1 Score: 168.3 bits (425), Expect = 5.7e-38
Identity = 98/190 (51.58%), Postives = 116/190 (61.05%), Query Frame = 0 

Query: 1   MSAKRSLFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKALPDLITFVGVLVA 60
           ++  RSLFE+LE KR+VSW NAM+TG AMHGHA EALD FE++ GKALPD ITFVGVL A
Sbjct: 322 VNVARSLFEILEEKRVVSW-NAMITGYAMHGHAKEALDLFEKMKGKALPDHITFVGVLAA 381

Query: 61  CTAVGLLDEWKKYFRSM---------------------------------------PDAG 120
           C+  GLL+E K YFRSM                                       PDAG
Sbjct: 382 CSHGGLLNEGKMYFRSMVSDYIICPTVQHYTCMIDLLGHCGHLEEAYNLIMEMRVEPDAG 441

Query: 121 IYGLLLHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYT-LKQWLHLATITE--T 149
           ++G LLHS KIHGNVEMGELALEKLIELE DD  NY++LSNMY     W  +A + +   
Sbjct: 442 VWGALLHSCKIHGNVEMGELALEKLIELEPDDGGNYVILSNMYAQAGNWEGVARLRDLMM 501

[Close]
BLAST of CmaCh17G008060 vs. NCBI nr
Match: XP_031744701.1 (pentatricopeptide repeat-containing protein At4g21065 [Cucumis sativus] >XP_031744702.1 pentatricopeptide repeat-containing protein At4g21065 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 4.9e-37
Identity = 93/184 (50.54%), Postives = 116/184 (63.04%), Query Frame = 0 

Query: 1   MSAKRSLFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKALPDLITFVGVLVA 60
           ++  RSLFE+LE KR+VSW NAM+TG AMHGHANEALD F+++ GK LPD ITFVGVL A
Sbjct: 318 VNVARSLFELLEEKRVVSW-NAMITGYAMHGHANEALDLFKEMKGKVLPDHITFVGVLAA 377

Query: 61  CTAVGLLDEWKKYFRSM---------------------------------------PDAG 120
           C+  GLL+E K +FRSM                                       PDAG
Sbjct: 378 CSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAG 437

Query: 121 IYGLLLHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYT-LKQWLHLATITETDI 145
           ++G LLHS KIHGNVEMGELALEKL+ELE DD  NY++LSNMY    +W  +A +   D+
Sbjct: 438 VWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARL--RDL 497

[Close]
BLAST of CmaCh17G008060 vs. NCBI nr
Match: KAA0059294.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK04034.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 5.4e-36
Identity = 94/190 (49.47%), Postives = 115/190 (60.53%), Query Frame = 0 

Query: 1   MSAKRSLFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKALPDLITFVGVLVA 60
           ++  R LFE+LE KR+VSW NAM+TG AMHGHANEALD F+++  K LPD ITFVGVL A
Sbjct: 322 VNVARILFELLEEKRVVSW-NAMITGYAMHGHANEALDLFKEMKAKVLPDHITFVGVLAA 381

Query: 61  CTAVGLLDEWKKYFRSM---------------------------------------PDAG 120
           C+  GLL+E K +FRSM                                       PDAG
Sbjct: 382 CSHGGLLNEGKMHFRSMISDFNICPTVQHYTCMIDLLGHCGCLEEAYKLIMEMRVEPDAG 441

Query: 121 IYGLLLHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYT-LKQWLHLATITE--T 149
           ++G LLHS KIHGNVEMGELALEKLIELE DD  NY++LSNMY    +W  +A + +   
Sbjct: 442 VWGALLHSCKIHGNVEMGELALEKLIELEPDDGGNYVILSNMYAQAGKWDGVARLRDFMM 501

[Close]
BLAST of CmaCh17G008060 vs. NCBI nr
Match: XP_008462155.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 5.4e-36
Identity = 94/190 (49.47%), Postives = 115/190 (60.53%), Query Frame = 0 

Query: 1   MSAKRSLFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKALPDLITFVGVLVA 60
           ++  R LFE+LE KR+VSW NAM+TG AMHGHANEALD F+++  K LPD ITFVGVL A
Sbjct: 322 VNVARILFELLEEKRVVSW-NAMITGYAMHGHANEALDLFKEMKAKVLPDHITFVGVLAA 381

Query: 61  CTAVGLLDEWKKYFRSM---------------------------------------PDAG 120
           C+  GLL+E K +FRSM                                       PDAG
Sbjct: 382 CSHGGLLNEGKMHFRSMISDFNICPTVQHYTCMIDLLGHCGCLEEAYKLIMEMRVEPDAG 441

Query: 121 IYGLLLHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYT-LKQWLHLATITE--T 149
           ++G LLHS KIHGNVEMGELALEKLIELE DD  NY++LSNMY    +W  +A + +   
Sbjct: 442 VWGALLHSCKIHGNVEMGELALEKLIELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMM 501

[Close]
BLAST of CmaCh17G008060 vs. NCBI nr
Match: XP_022150877.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Momordica charantia] >XP_022150878.1 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Momordica charantia] >XP_022150879.1 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Momordica charantia] >XP_022150880.1 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Momordica charantia] >XP_022150881.1 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Momordica charantia] >XP_022150882.1 pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Momordica charantia])

HSP 1 Score: 161.4 bits (407), Expect = 7.0e-36
Identity = 94/186 (50.54%), Postives = 111/186 (59.68%), Query Frame = 0 

Query: 5   RSLFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKALPDLITFVGVLVACTAV 64
           RSLFEML  KR+VSW N M+TG AMHGHA EALD FE++  KA+PD ITFVGVL AC+  
Sbjct: 310 RSLFEMLNKKRVVSW-NTMITGYAMHGHATEALDLFEEMKKKAMPDYITFVGVLAACSHG 369

Query: 65  GLLDEWKKYFRSM---------------------------------------PDAGIYGL 124
           GLLDE K YFRSM                                       PDAG++G 
Sbjct: 370 GLLDEGKMYFRSMVIDCLIDPTVQHYTCMIDLLGHCGHLEEAYNLIMEMRVEPDAGVWGA 429

Query: 125 LLHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYT-LKQWLHLATITE--TDIVL 149
           LLHS KIHGNVEMGELALEKL ELE DD  N+++LSNMY    +W  +A + +   D  L
Sbjct: 430 LLHSCKIHGNVEMGELALEKLSELEPDDGGNFVILSNMYAQAGKWEGVARMRDLMMDRGL 489

[Close]
BLAST of CmaCh17G008060 vs. TAIR 10
Match: AT4G16835.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-19
Identity = 58/170 (34.12%), Postives = 88/170 (51.76%), Query Frame = 0 

Query: 7   LFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSF-EQLNGKALPDLITFVGVLVACTAVG 66
           LFE+++ K +V+W NAM++G A HG+A++AL  F E ++ K  PD ITFV VL+AC   G
Sbjct: 341 LFEVMKKKDVVAW-NAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAG 400

Query: 67  LLDEWKKYFRSM---------------------------------------PDAGIYGLL 126
           L++    YF SM                                       P A ++G L
Sbjct: 401 LVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTL 460

Query: 127 LHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYTLK-QWLHLATI 136
           L + ++H NVE+ E A EKL++L S +   Y+ L+N+Y  K +W  +A +
Sbjct: 461 LGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARV 509

[Close]
BLAST of CmaCh17G008060 vs. TAIR 10
Match: AT1G20230.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 3.7e-19
Identity = 60/184 (32.61%), Postives = 87/184 (47.28%), Query Frame = 0 

Query: 7   LFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKAL-PDLITFVGVLVACTAVG 66
           +F M+  K +V W N+++ G +MHG A E +  FE L    L PD I+F  +L AC  VG
Sbjct: 445 VFNMMPTKNLVCW-NSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVG 504

Query: 67  LLDEWKKYFRSM---------------------------------------PDAGIYGLL 126
           L DE  KYF+ M                                       PD+ ++G L
Sbjct: 505 LTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGAL 564

Query: 127 LHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYTLK-QWLHLATITETDIVLNEQ 150
           L+S ++  NV++ E+A EKL  LE ++   Y++LSN+Y  K  W      TE D + N+ 
Sbjct: 565 LNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMW------TEVDSIRNKM 621

[Close]
BLAST of CmaCh17G008060 vs. TAIR 10
Match: AT1G13410.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-17
Identity = 51/158 (32.28%), Postives = 82/158 (51.90%), Query Frame = 0 

Query: 7   LFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKAL-PDLITFVGVLVACTAVG 66
           +F+ ++ + ++SW N M+ G A HGH  EAL+ F ++    + PD +TFVGVL AC  +G
Sbjct: 246 VFKGIKRRDLISW-NTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMG 305

Query: 67  LLDEWKKYFRSM---------------------------------------PDAGIYGLL 125
           L+++   YF SM                                        DA I+  L
Sbjct: 306 LVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATL 365

[Close]
BLAST of CmaCh17G008060 vs. TAIR 10
Match: AT1G25360.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-17
Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 0 

Query: 5   RSLFEMLEGKRIVSWKNAMLTGCAMHGHANEALDSFEQLNGKAL-PDLITFVGVLVACTA 64
           R +F  +     VSW NA++     HGH  EA+D +E++  K + PD IT + VL AC+ 
Sbjct: 472 RQVFRTMPCLDSVSW-NALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSH 531

Query: 65  VGLLDEWKKYFRSM---------------------------------------PDAGIYG 124
            GL+D+ +KYF SM                                       P A I+ 
Sbjct: 532 AGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWE 591

Query: 125 LLLHSFKIHGNVEMGELALEKLIELESDDDRNYMVLSNMYTLK-QWLHLATITE--TDIV 149
            LL   ++HGN+E+G +A +KL  L  + D  YM+LSNM+    QW  +A + +   D  
Sbjct: 592 ALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRG 651

[Close]
BLAST of CmaCh17G008060 vs. TAIR 10
Match: AT4G13650.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 3.5e-17
Identity = 53/157 (33.76%), Postives = 79/157 (50.32%), Query Frame = 0 

Query: 14  KRIVSWKNAMLTGCAMHGHANEALDSFEQ-LNGKALPDLITFVGVLVACTAVGLLDEWKK 73
           K  VSW NA++   + HG  +EALDSF+Q ++    P+ +T VGVL AC+ +GL+D+   
Sbjct: 756 KNEVSW-NAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIA 815

Query: 74  YFRSM---------------------------------------PDAGIYGLLLHSFKIH 130
           YF SM                                       PDA ++  LL +  +H
Sbjct: 816 YFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVH 875

The following BLAST results are available for this feature:
BLAST of CmaCh17G008060 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M4P32.4e-1834.12Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidop... [more]
Q9LNU65.2e-1832.61Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana OX... [more]
Q9FRI52.9e-1630.48Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana OX... [more]
Q9SVP74.9e-1633.76Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX... [more]
Q9SY026.4e-1632.91Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX... [more]
BLAST of CmaCh17G008060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAF02.3e-3750.54DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G4468... [more]
A0A5A7UW412.6e-3649.47Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CG772.6e-3649.47pentatricopeptide repeat-containing protein At4g21065-like OS=Cucumis melo OX=36... [more]
A0A6J1DBD33.4e-3650.54pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Mom... [more]
A0A6J1JVL24.1e-3494.81putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxi... [more]
BLAST of CmaCh17G008060 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038898350.15.7e-3851.58pentatricopeptide repeat-containing protein At4g21065-like [Benincasa hispida] >... [more]
XP_031744701.14.9e-3750.54pentatricopeptide repeat-containing protein At4g21065 [Cucumis sativus] >XP_0317... [more]
KAA0059294.15.4e-3649.47pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK04034... [more]
XP_008462155.15.4e-3649.47PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis m... [more]
XP_022150877.17.0e-3650.54pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Momor... [more]
BLAST of CmaCh17G008060 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G16835.11.7e-1934.12Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G20230.13.7e-1932.61Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G13410.11.6e-1732.28Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G25360.12.0e-1730.48Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G13650.13.5e-1733.76Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 3..163
e-value: 5.8E-14
score: 54.2
NoneNo IPR availablePANTHERPTHR47924PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINcoord: 2..77
coord: 77..125
NoneNo IPR availablePANTHERPTHR47924:SF27SUBFAMILY NOT NAMEDcoord: 2..77
coord: 77..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G008060.1CmaCh17G008060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding