CmaCh17G007200 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G007200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr17: 5918776 .. 5919752 (-)
RNA-Seq Expression	CmaCh17G007200
Synteny	CmaCh17G007200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCATTAGCATAAGTGGAACATCAATATAGTGAGTGCAACTCTATATTGATGTTTAGTCATTTTTTGGGGCAGATTTGTGTTTTAGTTTGTTGAGTATTGCACACAGATTTTGTACTCAAGAATAATTGTAAATTGTTGCAGAACATTTATTGATTTACAATTTATTAAACTCGGAGACACATCTCCTGAATGCCAAGAGTAGTACACCATGTAGTACTTGAGCATTACTAGGTACCCATTTTTTTTATCACGTCCAAAGCTGCATCCCTAAGATTGTAACTGTTCAAACTGCAGAAAACTCTAAACCCAAAGCCCTAAACATGGCAGTAAAACCCACTGTTGCCTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTTGCTAAAATCGCTGGTGCAATGAAAGCTGCAGGTGGCGTAAAGTTAGGTGCAGCCACGGCTGCCATGACAGCAGCAGCAACTGCAGCTTTGGCAGGATCAAAACAAGACCAGAAGGATGATTCCAAACACCCTCCAAAATGATGCCCCTCCTGTTCTGCACCTCACACAAACAAATCCCAATAATGTTTTGGGACTTTTTTCCCCCCTCTTTGTAATTTTGGTAGGGAGACATAATGTATAAACCCCAACCTTTAGGCTTCAGCCATAGCCATGGTGCTAAAATAATAAGAGCTGGCCAGATCTCTTTAGTTCACAGGATGGATTTTACATCTCGATGTCATACCGTTCCATCATTATTATACTTGGAACATTTTTTTTATCATCGTTTCTGCATTTCATGGATAGTTTCAATAATGTCGTCTGTAAAGAGACTCTGTGGTCCATAGGAAGGACGTATACAAGGTTGAGACATGTGATTCATTTCCCTTTATCAGAAGGGAAACTGCTGTTTTGTGTTTGTAGCTGTTGTTTGGTTGCTGAGAAAAAAGGTGTGGGAAAAGGAAAAGTATGTAGAAAAATGATGAGAATGAAT

mRNA sequence

ATGGAAAACTCTAAACCCAAAGCCCTAAACATGGCAGTAAAACCCACTGTTGCCTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTTGCTAAAATCGCTGGTGCAATGAAAGCTGCAGGTGGCGTAAAGTTAGGTGCAGCCACGGCTGCCATGACAGCAGCAGCAACTGCAGCTTTGGCAGGATCAAAACAAGACCAGAAGGATGATTCCAAACACCCTCCAAAATGATGCCCCTCCTGTTCTGCACCTCACACAAACAAATCCCAATAATGTTTTGGGACTTTTTTCCCCCCTCTTTGTAATTTTGGTAGGGAGACATAATGTATAAACCCCAACCTTTAGGCTTCAGCCATAGCCATGGTGCTAAAATAATAAGAGCTGGCCAGATCTCTTTAGTTCACAGGATGGATTTTACATCTCGATGTCATACCGTTCCATCATTATTATACTTGGAACATTTTTTTTATCATCGTTTCTGCATTTCATGGATAGTTTCAATAATGTCGTCTGTAAAGAGACTCTGTGGTCCATAGGAAGGACGTATACAAGGTTGAGACATGTGATTCATTTCCCTTTATCAGAAGGGAAACTGCTGTTTTGTGTTTGTAGCTGTTGTTTGGTTGCTGAGAAAAAAGGTGTGGGAAAAGGAAAAGTATGTAGAAAAATGATGAGAATGAAT

Coding sequence (CDS)

ATGGAAAACTCTAAACCCAAAGCCCTAAACATGGCAGTAAAACCCACTGTTGCCTTGCGAGCTGTACTTGTTGGAGGAATTGCAGCGTTTGCTAAAATCGCTGGTGCAATGAAAGCTGCAGGTGGCGTAAAGTTAGGTGCAGCCACGGCTGCCATGACAGCAGCAGCAACTGCAGCTTTGGCAGGATCAAAACAAGACCAGAAGGATGATTCCAAACACCCTCCAAAATGA

Protein sequence

MENSKPKALNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDDSKHPPK

Homology

[Close]

BLAST of CmaCh17G007200 vs. ExPASy TrEMBL
Match: A0A6J1JXL7 (uncharacterized protein LOC111488760 OS=Cucurbita maxima OX=3661 GN=LOC111488760 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-21
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 11 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 70
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 71 SKHPPK 77
          SKHPPK
Sbjct: 61 SKHPPK 66

[Close]

BLAST of CmaCh17G007200 vs. ExPASy TrEMBL
Match: A0A6J1GSG6 (uncharacterized protein LOC111456569 OS=Cucurbita moschata OX=3662 GN=LOC111456569 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 11 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 70
          MA+KPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD
Sbjct: 1  MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 71 SKHPPK 77
          SKHPPK
Sbjct: 61 SKHPPK 66

[Close]

BLAST of CmaCh17G007200 vs. ExPASy TrEMBL
Match: A0A6J1CPT9 (uncharacterized protein LOC111013620 OS=Momordica charantia OX=3673 GN=LOC111013620 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-20
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 11 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 70
          M VKPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAGSKQDQKDD
Sbjct: 1  MEVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 71 SKHPPK 77
          SKHPPK
Sbjct: 61 SKHPPK 66

[Close]

BLAST of CmaCh17G007200 vs. ExPASy TrEMBL
Match: A0A5A7UXR8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00940 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.7e-20
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 11 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 70
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAG+KQDQKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGTKQDQKDD 60

Query: 71 SKHPPK 77
          SKH PK
Sbjct: 61 SKHSPK 66

[Close]

BLAST of CmaCh17G007200 vs. ExPASy TrEMBL
Match: E5GCB3 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.8e-20
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 11 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 70
          MAVKPTVALRAVLVGGIAAFAK+AGAMKAAGG KLGAATAAMTAAATAALAG+KQDQKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKLAGAMKAAGGAKLGAATAAMTAAATAALAGTKQDQKDD 60

Query: 71 SKHPPK 77
          SKH PK
Sbjct: 61 SKHSPK 66

[Close]

BLAST of CmaCh17G007200 vs. NCBI nr
Match: KAG7014012.1 (hypothetical protein SDJN02_24183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-26
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 2   ENSKPKALNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALA 61
           ENSKPKALNMA+KPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALA
Sbjct: 101 ENSKPKALNMAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALA 160

Query: 62  GSKQDQKDDSKHPPK 77
           GSKQDQKDDSKHPPK
Sbjct: 161 GSKQDQKDDSKHPPK 175

[Close]

BLAST of CmaCh17G007200 vs. NCBI nr
Match: KAG6575471.1 (hypothetical protein SDJN03_26110, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.8 bits (325), Expect = 1.0e-26
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 2  ENSKPKALNMAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALA 61
          ENSKPKALNMA+KPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALA
Sbjct: 14 ENSKPKALNMAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALA 73

Query: 62 GSKQDQKDDSKHPPK 77
          GSKQDQKDDSKHPPK
Sbjct: 74 GSKQDQKDDSKHPPK 88

[Close]

BLAST of CmaCh17G007200 vs. NCBI nr
Match: XP_022992464.1 (uncharacterized protein LOC111488760 [Cucurbita maxima])

HSP 1 Score: 112.1 bits (279), Expect = 2.2e-21
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 11 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 70
          MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD
Sbjct: 1  MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 71 SKHPPK 77
          SKHPPK
Sbjct: 61 SKHPPK 66

[Close]

BLAST of CmaCh17G007200 vs. NCBI nr
Match: XP_022954259.1 (uncharacterized protein LOC111456569 [Cucurbita moschata] >XP_023547452.1 uncharacterized protein LOC111806392 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 111.7 bits (278), Expect = 2.8e-21
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 11 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 70
          MA+KPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD
Sbjct: 1  MAIKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 71 SKHPPK 77
          SKHPPK
Sbjct: 61 SKHPPK 66

[Close]

BLAST of CmaCh17G007200 vs. NCBI nr
Match: XP_022143791.1 (uncharacterized protein LOC111013620 [Momordica charantia] >XP_022143800.1 uncharacterized protein LOC111013620 [Momordica charantia] >XP_022143809.1 uncharacterized protein LOC111013620 [Momordica charantia] >XP_022143817.1 uncharacterized protein LOC111013620 [Momordica charantia])

HSP 1 Score: 108.6 bits (270), Expect = 2.4e-20
Identity = 64/66 (96.97%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 11 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALAGSKQDQKDD 70
          M VKPTVALRAVLVGGIAAFAKIAGAMKAAGG KLGAATAAMTAAATAALAGSKQDQKDD
Sbjct: 1  MEVKPTVALRAVLVGGIAAFAKIAGAMKAAGGAKLGAATAAMTAAATAALAGSKQDQKDD 60

Query: 71 SKHPPK 77
          SKHPPK
Sbjct: 61 SKHPPK 66

[Close]

BLAST of CmaCh17G007200 vs. TAIR 10
Match: AT3G13845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 22 Blast hits to 22 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-15
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 11 MAVKPTVALRAVLVGGIAAFAKIAGAMKAAGGVKLGAATAAMTAAATAALA-GSKQDQKD 70
          M+VKPTVALR +LVGG+A FAK+A AMKAAGGVKLGAA  AMT AATAA++ GSKQDQK 
Sbjct: 1  MSVKPTVALRGILVGGVAIFAKVAAAMKAAGGVKLGAAATAMTVAATAAVSGGSKQDQKQ 60

Query: 71 D-SKHPP 76
          D SK PP
Sbjct: 61 DASKAPP 67

The following BLAST results are available for this feature:

BLAST of CmaCh17G007200 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G007200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JXL7	1.0e-21	100.00	uncharacterized protein LOC111488760 OS=Cucurbita maxima OX=3661 GN=LOC111488760...	[more]
A0A6J1GSG6	1.4e-21	98.48	uncharacterized protein LOC111456569 OS=Cucurbita moschata OX=3662 GN=LOC1114565...	[more]
A0A6J1CPT9	1.2e-20	96.97	uncharacterized protein LOC111013620 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5A7UXR8	5.7e-20	95.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCB3	9.8e-20	93.94	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of CmaCh17G007200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014012.1	1.0e-26	98.67	hypothetical protein SDJN02_24183, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6575471.1	1.0e-26	98.67	hypothetical protein SDJN03_26110, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022992464.1	2.2e-21	100.00	uncharacterized protein LOC111488760 [Cucurbita maxima]	[more]
XP_022954259.1	2.8e-21	98.48	uncharacterized protein LOC111456569 [Cucurbita moschata] >XP_023547452.1 unchar...	[more]
XP_022143791.1	2.4e-20	96.97	uncharacterized protein LOC111013620 [Momordica charantia] >XP_022143800.1 uncha...	[more]

BLAST of CmaCh17G007200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13845.1	1.1e-15	76.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36755	PROTEIN, PUTATIVE-RELATED	coord: 7..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G007200.1	CmaCh17G007200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane