CmaCh17G005470 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G005470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RNA-binding protein 38-like
Location	Cma_Chr17: 4380748 .. 4383019 (-)
RNA-Seq Expression	CmaCh17G005470
Synteny	CmaCh17G005470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATTGTTATAACGTCCAATTTGTCTGTATAAATACATTCAATCTCACACAGAACGAGCACGAAGGGGCGTAGATTTCTCTTCGTTTAATTTGGTGCTTATTGGGAGGGGCATCTTTCTTTGCCTTATGTCTCAACAACACAGGCAATTTCATAACAATGGCGGCGGCGGCGGCGGCAGCAGCAGCAGCGTTGGCCTTTGGGGCCAGTATAATGACACCACTTTCACCAAAATCTTCGTTGGAGGGTTGGCTTGGGACACTCAGAGACATACCTTGAAAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAAACCACTGGCAGATCCAAGGGTTATGGCTTTGTAAGTCCCCATCCCCCCTTCTTGTTCTGGAATAATGCAGATTTGATTTGATTTGATTTGATTTCATTGATTTTGTTTTTAGGTCACATTTAAGGATCCTGATTCTGCCATTAGAGCTTCTCAAAACCCTTCCCCTGTTATCGATGGTAGAACGGCTAATTGCAATCTCGCTTCTCAACACGGTTCGTTCTCATTTCTTTGATCTTTACCTTCTTTTTCAAAAAATGCTTTGATCGTTCCAATGGATCATAAAAATTCCACATGCAATCTGAATCTCCATTTCTTTTGCTGAGAATCATGTCAAATCCAAAAATATTGAACAAATTTGCAGGTGTTGCTGGAAGATTTAGAGGTTCATCTGGGATTGTGACCCCCCATGCTTATCATATCCCTTCATCATCTTATATCCATCAACCCACTACTCAATACTCATACCCTCTTTCAGGATATGGGTAAGGTTGAAACAAGAACTATAAATGATATCAACAAAACCCAATTTTACCACTTTCCTGTTCTTGATTAAAACTGTCATTTCAGGTTTGCTGGATATTCACAAGACATAATCCATCCCTTGGTAGGAATCTATGTTTATATGTTTGTGTTTGTGATCTTGTTGGCATTGATTTTGGTCTGGGCGTTGTGTTTTCAATGCAGAACTATTATGGTGCTTACAGGGGCCAACAATTTTCACCTTATTACTCTGGAATTGGGATTTCAGAACAGGCTAGAATGTTTGAAAATCTCTATCCATATTATGCTCAAAGTAGCCAGGGGTACGCGTTTGGAATTCAGTATCCACACCTAATGCATTACCCGTGTCTTCATCAGCAGCAGCACGGTTTGACCGATATCCTATCGCTTCCTGGCTGGAATGCAACAAGAACAGGTGCTAAATGAACTACAATTGCTTGTAATCTAATCCATTATTGTGTCATTGATGTTGGGAATTGTTATCTAAAGAATGTCACTTGTTTGGGACATGTTGGTTTTGAAAGTGGTCTGGAGGTTTATGTGCAAATTGTAACAGGTACAACAGCAACACCGACATGGGCGGTCGTATCTGGACCTTCACAAGCTTCTTCTGCAATAGCTTCTGAACCGAAGTCTTCGAGTTAACGGCATAGACAAAGCTTGAAAAACACATCGAGGGAACACTCAAGAACAATGGCAAGTTTGTAAGTTGTGTGATTCAATAAGAAGGATGGGAAAACGACATTCATGTTCCAGCACGGTTGAGTCATCCGTTTAACTTGGTAACAAGCGTTCCAGAGATGGTACAAAGTTGCATCAGTAACATCATATCCATGTCTAACAACATTATATATGTTTGGAGTCTGCAAGTAGTTTGTTAGAATTAGGTGAAGAATTTGATTGATTCATGTATTCAACGAAAGACGGGGAACCGAAAGGAGGCTTTGGGTACCCGTCTTTTTGTTCGGACTGCAATGAGACAATCACGTCTGGGAAGCGGAGAGCATCCTATGCCACGCTCGTTAACAGTGAATTGATCAAGAAGGAAAGGGAGTATCAGTTGGTTTGTTTTTAGCTTTTATTAATATAATTTTTTGGGGGATTGTGTCATAAAGTTAGTCAAGGCAAGTTTTAGGGAATCATGTGCCTGCTTGGGATCCTCCATATAACATACATCAGTTCCGAATCAAAATCAACACCAGAACAAGTAGTTCCCTCTAGTAAAAGACTAGAGAGTTATGTAAATGAACCAAGACCATATGGAACGACCCTACATTTCTATTTAAAAATAATGTCGTCTAAATTCTATAGCCTCCAGAGTTGACGTCCTCTTCCCTACACATGAGTGTCTTATTTTACTATCTTATTCATGACTTGTCCAACAATTCATGACTACAATCTAACCCTACGGGTGTCTTACTTTACTTTACTATATCAC

mRNA sequence

AGATTGTTATAACGTCCAATTTGTCTGTATAAATACATTCAATCTCACACAGAACGAGCACGAAGGGGCGTAGATTTCTCTTCGTTTAATTTGGTGCTTATTGGGAGGGGCATCTTTCTTTGCCTTATGTCTCAACAACACAGGCAATTTCATAACAATGGCGGCGGCGGCGGCGGCAGCAGCAGCAGCGTTGGCCTTTGGGGCCAGTATAATGACACCACTTTCACCAAAATCTTCGTTGGAGGGTTGGCTTGGGACACTCAGAGACATACCTTGAAAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAAACCACTGGCAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGATTCTGCCATTAGAGCTTCTCAAAACCCTTCCCCTGTTATCGATGGTAGAACGGCTAATTGCAATCTCGCTTCTCAACACGGTGTTGCTGGAAGATTTAGAGGTTCATCTGGGATTGTGACCCCCCATGCTTATCATATCCCTTCATCATCTTATATCCATCAACCCACTACTCAATACTCATACCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACATAATCCATCCCTTGAACTATTATGGTGCTTACAGGGGCCAACAATTTTCACCTTATTACTCTGGAATTGGGATTTCAGAACAGGCTAGAATGTTTGAAAATCTCTATCCATATTATGCTCAAAGTAGCCAGGGGTACGCGTTTGGAATTCAGTATCCACACCTAATGCATTACCCGTGTCTTCATCAGCAGCAGCACGGTTTGACCGATATCCTATCGCTTCCTGGCTGGAATGCAACAAGAACAGGTACAACAGCAACACCGACATGGGCGGTCGTATCTGGACCTTCACAAGCTTCTTCTGCAATAGCTTCTGAACCGAAGTCTTCGAGTTAACGGCATAGACAAAGCTTGAAAAACACATCGAGGGAACACTCAAGAACAATGGCAAGTTTGTAAGTTGTGTGATTCAATAAGAAGGATGGGAAAACGACATTCATGTTCCAGCACGGTTGAGTCATCCGTTTAACTTGGTAACAAGCGTTCCAGAGATGGTACAAAGTTGCATCAGTAACATCATATCCATGTCTAACAACATTATATATGTTTGGAGTCTGCAAGTAGTTTGTTAGAATTAGGTGAAGAATTTGATTGATTCATGTATTCAACGAAAGACGGGGAACCGAAAGGAGGCTTTGGGTACCCGTCTTTTTGTTCGGACTGCAATGAGACAATCACGTCTGGGAAGCGGAGAGCATCCTATGCCACGCTCGTTAACAGTGAATTGATCAAGAAGGAAAGGGAGTATCAGTTGGTTTGTTTTTAGCTTTTATTAATATAATTTTTTGGGGGATTGTGTCATAAAGTTAGTCAAGGCAAGTTTTAGGGAATCATGTGCCTGCTTGGGATCCTCCATATAACATACATCAGTTCCGAATCAAAATCAACACCAGAACAAGTAGTTCCCTCTAGTAAAAGACTAGAGAGTTATGTAAATGAACCAAGACCATATGGAACGACCCTACATTTCTATTTAAAAATAATGTCGTCTAAATTCTATAGCCTCCAGAGTTGACGTCCTCTTCCCTACACATGAGTGTCTTATTTTACTATCTTATTCATGACTTGTCCAACAATTCATGACTACAATCTAACCCTACGGGTGTCTTACTTTACTTTACTATATCAC

Coding sequence (CDS)

ATGTCTCAACAACACAGGCAATTTCATAACAATGGCGGCGGCGGCGGCGGCAGCAGCAGCAGCGTTGGCCTTTGGGGCCAGTATAATGACACCACTTTCACCAAAATCTTCGTTGGAGGGTTGGCTTGGGACACTCAGAGACATACCTTGAAAAGGTATTTTGAACAATTTGGTGAAATTTTGGAAGCTGTTGTTATTACTGATAAAACCACTGGCAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGATTCTGCCATTAGAGCTTCTCAAAACCCTTCCCCTGTTATCGATGGTAGAACGGCTAATTGCAATCTCGCTTCTCAACACGGTGTTGCTGGAAGATTTAGAGGTTCATCTGGGATTGTGACCCCCCATGCTTATCATATCCCTTCATCATCTTATATCCATCAACCCACTACTCAATACTCATACCCTCTTTCAGGATATGGGTTTGCTGGATATTCACAAGACATAATCCATCCCTTGAACTATTATGGTGCTTACAGGGGCCAACAATTTTCACCTTATTACTCTGGAATTGGGATTTCAGAACAGGCTAGAATGTTTGAAAATCTCTATCCATATTATGCTCAAAGTAGCCAGGGGTACGCGTTTGGAATTCAGTATCCACACCTAATGCATTACCCGTGTCTTCATCAGCAGCAGCACGGTTTGACCGATATCCTATCGCTTCCTGGCTGGAATGCAACAAGAACAGGTACAACAGCAACACCGACATGGGCGGTCGTATCTGGACCTTCACAAGCTTCTTCTGCAATAGCTTCTGAACCGAAGTCTTCGAGTTAA

Protein sequence

MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRGSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYYSGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLTDILSLPGWNATRTGTTATPTWAVVSGPSQASSAIASEPKSSS

Homology

[Close]

BLAST of CmaCh17G005470 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-24
Identity = 66/149 (44.30%), Postives = 92/149 (61.74%), Query Frame = 0


Query: 26  GQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVVITDKTTGRSKGYGFVTFKDP 85
           G + DT  TK+FVGGLAWDT +  +  +F ++G+ILEAV+I+DK T RSKGYGFVTFKD 
Sbjct: 9   GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDA 68

Query: 86  DSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRGSSGIVTPHAYHIPSSSYIHQPT--- 145
            +A RA ++ +P+I+GR ANCNLAS   + GR R S  + +P     P +     P    
Sbjct: 69  KAATRACEDSTPIINGRRANCNLAS---LGGRLRKSPTMTSPQ--QGPKNGNRATPPHVG 128

Query: 146 --TQYSYPLSGYGFAGYSQDIIHPLNYYG 170
             +Q+ YP SG+    + Q     + +YG
Sbjct: 129 NHSQWYYP-SGFTNQQHQQQNHQAVPFYG 151

[Close]

BLAST of CmaCh17G005470 vs. ExPASy Swiss-Prot
Match: Q62176 (RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 8.5e-23
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 18  SSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVVITDKTTGRSKGY 77
           S++   + G   DTTFTKIFVGGL + T   +L++YFE FG+I EAVVITD+ TG+S+GY
Sbjct: 16  SAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGY 75

Query: 78  GFVTFKDPDSAIRASQNPSPVIDGRTANCNLA 110
           GFVT  D  +A RA ++P+P+IDGR AN NLA
Sbjct: 76  GFVTMADRAAADRACKDPNPIIDGRKANVNLA 107

[Close]

BLAST of CmaCh17G005470 vs. ExPASy Swiss-Prot
Match: Q9H0Z9 (RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-22
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 0


Query: 26  GQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVVITDKTTGRSKGYGFVTFKDP 85
           G   DTTFTKIFVGGL + T   +L++YFE FG+I EAVVITD+ TG+S+GYGFVT  D 
Sbjct: 26  GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 85

Query: 86  DSAIRASQNPSPVIDGRTANCNLA 110
            +A RA ++P+P+IDGR AN NLA
Sbjct: 86  AAAERACKDPNPIIDGRKANVNLA 109

[Close]

BLAST of CmaCh17G005470 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.5e-22
Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 30  DTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVVITDKTTGRSKGYGFVTFKDPDSAI 89
           DTT+TKIFVGGL + T   +L++YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 90  RASQNPSPVIDGRTANCNLA 110
           RA ++P+P+IDGR AN NLA
Sbjct: 67  RACKDPNPIIDGRKANVNLA 86

[Close]

BLAST of CmaCh17G005470 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.5e-22
Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 30  DTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVVITDKTTGRSKGYGFVTFKDPDSAI 89
           DTT+TKIFVGGL + T   +L++YFE FG+I EAVVITD+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 90  RASQNPSPVIDGRTANCNLA 110
           RA ++P+P+IDGR AN NLA
Sbjct: 67  RACKDPNPIIDGRKANVNLA 86

[Close]

BLAST of CmaCh17G005470 vs. ExPASy TrEMBL
Match: A0A6J1JYZ4 (RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111488693 PE=4 SV=1)

HSP 1 Score: 553.1 bits (1424), Expect = 6.3e-154
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0


Query: 1   MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60
           MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI
Sbjct: 1   MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60

Query: 61  LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG 120
           LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG
Sbjct: 61  LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG 120

Query: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180
           SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY
Sbjct: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180

Query: 181 SGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLTDILSLPGWNAT 240
           SGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLTDILSLPGWNAT
Sbjct: 181 SGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLTDILSLPGWNAT 240

Query: 241 RTGTTATPTWAVVSGPSQASSAIASEPKSSS 272
           RTGTTATPTWAVVSGPSQASSAIASEPKSSS
Sbjct: 241 RTGTTATPTWAVVSGPSQASSAIASEPKSSS 271

[Close]

BLAST of CmaCh17G005470 vs. ExPASy TrEMBL
Match: A0A6J1EPB6 (RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111436341 PE=4 SV=1)

HSP 1 Score: 485.7 bits (1249), Expect = 1.2e-133
Identity = 246/271 (90.77%), Postives = 250/271 (92.25%), Query Frame = 0


Query: 1   MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60
           MSQQH QF NNGGGG       GLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI
Sbjct: 1   MSQQHWQFLNNGGGG-------GLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60

Query: 61  LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG 120
           LEAV+ITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGV GRFR 
Sbjct: 61  LEAVIITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVVGRFRD 120

Query: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180
           SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY
Sbjct: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180

Query: 181 SGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLTDILSLPGWNAT 240
           S  GIS+QARMF+NLYPYYAQSSQGYAFGIQYPHL+ YP LH QQHGL DILSLPG NAT
Sbjct: 181 SANGISDQARMFQNLYPYYAQSSQGYAFGIQYPHLIQYPYLH-QQHGLIDILSLPGSNAT 240

Query: 241 RTGTTATPTWAVVSGPSQASSAIASEPKSSS 272
           R GTTATPTWAV SGPSQAS AIASEPKSSS
Sbjct: 241 RAGTTATPTWAVGSGPSQASFAIASEPKSSS 263

[Close]

BLAST of CmaCh17G005470 vs. ExPASy TrEMBL
Match: A0A1S3CBZ0 (RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 2.1e-109
Identity = 218/284 (76.76%), Postives = 232/284 (81.69%), Query Frame = 0


Query: 1   MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60
           MSQQ RQFHN       SS S+G  GQYNDTTFTKIFVGGLAW+TQRHT++RYFEQFGEI
Sbjct: 1   MSQQ-RQFHNINSSNNSSSLSLG--GQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 60

Query: 61  LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLAS---------- 120
           LEAVVITDK TGRSKGYGFVTFKDPD+AIRA QNPSPVIDGR ANCNLAS          
Sbjct: 61  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPT 120

Query: 121 -QHGVAGRFRGSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYG 180
            QHGV GRFRG+SGIVTP AYH+ SSSYIHQPT+QYS+PLSGYGFAGYSQD I+PLNYYG
Sbjct: 121 PQHGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYG 180

Query: 181 AYRGQQFSPYYSGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLT 240
            Y GQQFSPYYS  G+S  A MF+NLYPYYAQSSQGY FGIQYPHLM YP L  QQHG T
Sbjct: 181 VYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYL-PQQHGST 240

Query: 241 DILSLPGWNA---TRTGTTATPTWAVVSGPSQASSAIASEPKSS 271
            ILSLPG NA   T +GTTAT T AV SGPSQASSA+ASEP SS
Sbjct: 241 GILSLPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSS 280

[Close]

BLAST of CmaCh17G005470 vs. ExPASy TrEMBL
Match: A0A0A0K998 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 4.4e-107
Identity = 214/284 (75.35%), Postives = 229/284 (80.63%), Query Frame = 0


Query: 1   MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60
           MSQQ RQFHN       SS S+G  GQYNDTTFTKIFVGGLAW+TQRHT++RYFEQFGEI
Sbjct: 1   MSQQ-RQFHNINSSNNSSSLSLG--GQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 60

Query: 61  LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLAS---------- 120
           LEAVVITDK TGRSKGYGFVTFKDPD+AIRA QNPSPVIDGR ANCNLAS          
Sbjct: 61  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPT 120

Query: 121 -QHGVAGRFRGSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYG 180
            QHGV GRFRG+SGIVTP AYH+ SSSYIHQPT+QYS+PLSGYGFAGYSQD I+PLNYYG
Sbjct: 121 PQHGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYG 180

Query: 181 AYRGQQFSPYYSGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLT 240
            Y GQQFSPYYS  G+S  A MF+NLYPYYAQSSQGY FG+QYPHLM YP L  QQH  T
Sbjct: 181 VYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGMQYPHLMQYPYL-PQQHSST 240

Query: 241 DILSLPGWNA---TRTGTTATPTWAVVSGPSQASSAIASEPKSS 271
            ILSLPG NA   T +GTTAT   AV SGPSQAS A+ASEP SS
Sbjct: 241 GILSLPGSNALGTTTSGTTATTITAVGSGPSQASPAVASEPNSS 280

[Close]

BLAST of CmaCh17G005470 vs. ExPASy TrEMBL
Match: A0A5A7TA32 (RNA-binding protein 24-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G001330 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 7.3e-102
Identity = 210/284 (73.94%), Postives = 224/284 (78.87%), Query Frame = 0


Query: 1   MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60
           MSQQ RQFHN       SS S+G  GQYNDTTFTKIFVGGLAW+TQRHT++RYFEQFGEI
Sbjct: 1   MSQQ-RQFHNINSSNNSSSLSLG--GQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 60

Query: 61  LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLAS---------- 120
           LEAVVITDK TGRS        KDPD+AIRA QNPSPVIDGR ANCNLAS          
Sbjct: 61  LEAVVITDKNTGRS--------KDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPT 120

Query: 121 -QHGVAGRFRGSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYG 180
            QHGV GRFRG+SGIVTP AYH+ SSSYIHQPT+QYS+PLSGYGFAGYSQD I+PLNYYG
Sbjct: 121 PQHGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYG 180

Query: 181 AYRGQQFSPYYSGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLT 240
            Y GQQFSPYYS  G+S  A MF+NLYPYYAQSSQGY FGIQYPHLM YP L  QQHG T
Sbjct: 181 VYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYL-PQQHGST 240

Query: 241 DILSLPGWNA---TRTGTTATPTWAVVSGPSQASSAIASEPKSS 271
            ILSLPG NA   T +GTTAT T AV SGPSQASSA+ASEP SS
Sbjct: 241 GILSLPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSS 272

[Close]

BLAST of CmaCh17G005470 vs. NCBI nr
Match: XP_022992358.1 (RNA-binding protein 38-like [Cucurbita maxima])

HSP 1 Score: 553.1 bits (1424), Expect = 1.3e-153
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0


Query: 1   MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60
           MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI
Sbjct: 1   MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60

Query: 61  LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG 120
           LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG
Sbjct: 61  LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG 120

Query: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180
           SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY
Sbjct: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180

Query: 181 SGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLTDILSLPGWNAT 240
           SGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLTDILSLPGWNAT
Sbjct: 181 SGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLTDILSLPGWNAT 240

Query: 241 RTGTTATPTWAVVSGPSQASSAIASEPKSSS 272
           RTGTTATPTWAVVSGPSQASSAIASEPKSSS
Sbjct: 241 RTGTTATPTWAVVSGPSQASSAIASEPKSSS 271

[Close]

BLAST of CmaCh17G005470 vs. NCBI nr
Match: KAG6575302.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 495.4 bits (1274), Expect = 3.2e-136
Identity = 251/271 (92.62%), Postives = 255/271 (94.10%), Query Frame = 0


Query: 1   MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60
           MSQQH QF NNGGGG    SSVGLWG YNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI
Sbjct: 1   MSQQHWQFLNNGGGG----SSVGLWGHYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60

Query: 61  LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG 120
           LEAV+ITDKTTGRSKGYGFVTFK+PDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG
Sbjct: 61  LEAVIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG 120

Query: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180
           SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY
Sbjct: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180

Query: 181 SGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLTDILSLPGWNAT 240
           S  GISEQARMF+NLYPYYAQSSQGYAFGIQYPH+M YP LH QQHGLTDIL LPG NAT
Sbjct: 181 SANGISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLH-QQHGLTDILLLPGSNAT 240

Query: 241 RTGTTATPTWAVVSGPSQASSAIASEPKSSS 272
           RTGTTATPTWAV SGPSQAS AIASEPKSSS
Sbjct: 241 RTGTTATPTWAVGSGPSQASFAIASEPKSSS 266

[Close]

BLAST of CmaCh17G005470 vs. NCBI nr
Match: XP_022929861.1 (RNA-binding protein 38-like [Cucurbita moschata])

HSP 1 Score: 485.7 bits (1249), Expect = 2.6e-133
Identity = 246/271 (90.77%), Postives = 250/271 (92.25%), Query Frame = 0


Query: 1   MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60
           MSQQH QF NNGGGG       GLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI
Sbjct: 1   MSQQHWQFLNNGGGG-------GLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60

Query: 61  LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG 120
           LEAV+ITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGV GRFR 
Sbjct: 61  LEAVIITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVVGRFRD 120

Query: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180
           SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY
Sbjct: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180

Query: 181 SGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLTDILSLPGWNAT 240
           S  GIS+QARMF+NLYPYYAQSSQGYAFGIQYPHL+ YP LH QQHGL DILSLPG NAT
Sbjct: 181 SANGISDQARMFQNLYPYYAQSSQGYAFGIQYPHLIQYPYLH-QQHGLIDILSLPGSNAT 240

Query: 241 RTGTTATPTWAVVSGPSQASSAIASEPKSSS 272
           R GTTATPTWAV SGPSQAS AIASEPKSSS
Sbjct: 241 RAGTTATPTWAVGSGPSQASFAIASEPKSSS 263

[Close]

BLAST of CmaCh17G005470 vs. NCBI nr
Match: KAG7013834.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 456.1 bits (1172), Expect = 2.2e-124
Identity = 226/242 (93.39%), Postives = 230/242 (95.04%), Query Frame = 0


Query: 1   MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60
           MSQQH QF NNGGGGG   SSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI
Sbjct: 1   MSQQHWQFLNNGGGGG---SSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60

Query: 61  LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG 120
           LEAV+ITDKTTGRSKGYGFVTFK+PDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG
Sbjct: 61  LEAVIITDKTTGRSKGYGFVTFKNPDSAIRASQNPSPVIDGRTANCNLASQHGVAGRFRG 120

Query: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180
           SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY
Sbjct: 121 SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRGQQFSPYY 180

Query: 181 SGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLTDILSLPGWNAT 240
           S  GISEQARMF+NLYPYYAQSSQGYAFGIQYPH+M YP LH QQHGLTDIL LPG NAT
Sbjct: 181 SANGISEQARMFQNLYPYYAQSSQGYAFGIQYPHVMQYPYLH-QQHGLTDILLLPGSNAT 238

Query: 241 RT 243
           RT
Sbjct: 241 RT 238

[Close]

BLAST of CmaCh17G005470 vs. NCBI nr
Match: XP_008460001.1 (PREDICTED: RNA-binding protein 24-B [Cucumis melo])

HSP 1 Score: 405.2 bits (1040), Expect = 4.4e-109
Identity = 218/284 (76.76%), Postives = 232/284 (81.69%), Query Frame = 0


Query: 1   MSQQHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEI 60
           MSQQ RQFHN       SS S+G  GQYNDTTFTKIFVGGLAW+TQRHT++RYFEQFGEI
Sbjct: 1   MSQQ-RQFHNINSSNNSSSLSLG--GQYNDTTFTKIFVGGLAWETQRHTMRRYFEQFGEI 60

Query: 61  LEAVVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLAS---------- 120
           LEAVVITDK TGRSKGYGFVTFKDPD+AIRA QNPSPVIDGR ANCNLAS          
Sbjct: 61  LEAVVITDKNTGRSKGYGFVTFKDPDAAIRACQNPSPVIDGRRANCNLASLGAHKPHPPT 120

Query: 121 -QHGVAGRFRGSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYG 180
            QHGV GRFRG+SGIVTP AYH+ SSSYIHQPT+QYS+PLSGYGFAGYSQD I+PLNYYG
Sbjct: 121 PQHGVGGRFRGASGIVTPPAYHVSSSSYIHQPTSQYSFPLSGYGFAGYSQDRIYPLNYYG 180

Query: 181 AYRGQQFSPYYSGIGISEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLT 240
            Y GQQFSPYYS  G+S  A MF+NLYPYYAQSSQGY FGIQYPHLM YP L  QQHG T
Sbjct: 181 VYGGQQFSPYYSANGLSGPAGMFQNLYPYYAQSSQGYGFGIQYPHLMQYPYL-PQQHGST 240

Query: 241 DILSLPGWNA---TRTGTTATPTWAVVSGPSQASSAIASEPKSS 271
            ILSLPG NA   T +GTTAT T AV SGPSQASSA+ASEP SS
Sbjct: 241 GILSLPGSNALGTTTSGTTATSTTAVGSGPSQASSAVASEPNSS 280

[Close]

BLAST of CmaCh17G005470 vs. TAIR 10
Match: AT2G46780.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 194.1 bits (492), Expect = 1.4e-49
Identity = 141/332 (42.47%), Postives = 175/332 (52.71%), Query Frame = 0


Query: 4   QHRQFHNNGGGGGGSSSSVGLWGQYNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEA 63
           Q RQF   GG    +           DT  TKIFVGGLAW+TQR T++RYFEQFGEI+EA
Sbjct: 3   QQRQFQMEGGNNNTT-----------DTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEA 62

Query: 64  VVITDKTTGRSKGYGFVTFKDPDSAIRASQNPSPVIDGRTANCNLA------------SQ 123
           VVITDK TGRSKGYGFVTFK+ ++A+RA QN +PVIDGR ANCNLA             +
Sbjct: 63  VVITDKNTGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPR 122

Query: 124 HGVAGRFR--GSS-GIVTPHAYHIPSSS---YIHQP----TTQYSYPLSGYGFAGYSQDI 183
           HG  GRFR  GS  G+V P      SSS   ++HQ     T Q+ +P S YGF+GYSQ+ 
Sbjct: 123 HG-TGRFRSPGSGVGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEG 182

Query: 184 IHPLNYYG--AYRGQQFSPYYSGIGISEQARMFENLYPYY-----------------AQS 243
           ++P+NYY    Y GQQFSP Y G   +    MF   YPYY                 AQ 
Sbjct: 183 MYPMNYYNHHLYGGQQFSP-YMGHPSAGSTGMFHGFYPYYPQYNAAQSSNQAQAQVQAQH 242

Query: 244 SQGYAFG---------IQYPHLMHYPCLHQQQHGLTD-----ILSLP------------- 267
            QG++F          +QYP+L H P    QQ   +      ILSLP             
Sbjct: 243 HQGFSFQYTAPPAPPLLQYPYLPHQPHFSSQQQFSSQQPPPPILSLPTSLALSLPSSSSP 302

[Close]

BLAST of CmaCh17G005470 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-38
Identity = 99/228 (43.42%), Postives = 124/228 (54.39%), Query Frame = 0


Query: 28  YNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVVITDKTTGRSKGYGFVTFKDPDS 87
           + DTTFTK+FVGGLAW+TQ  TL+R+F+Q+G+ILEAVVITDK TGRSKGYGFVTF+DP++
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77

Query: 88  AIRASQNPSPVIDGRTANCNLAS--------QHGV----AGRFRGSS----GIVTPHAYH 147
           A RA  +P+P+IDGR ANCNLAS        Q+ V     GR R  S     + +P   H
Sbjct: 78  ARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGSVQSPRGLH 137

Query: 148 IPSSSYIHQPTTQYS----YPLSGYGFAGYSQDIIHPLN--YYGAYRGQQFSPYYSGIGI 207
             S  Y   PT  Y     YP   YG   Y  D ++  +  +YG Y GQQ+   Y   G 
Sbjct: 138 FGSHPYHQPPTYNYQQGVVYP---YGVTPYGPDYMYSQSQGFYGPYMGQQYLQVYGVPGA 197

Query: 208 SEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLTDILS 234
                       +    + GY  G  Y H    P  H  Q G T  +S
Sbjct: 198 VNSPGYQYGQLSHTIPGAHGYTAGQGYSH----PGSHVLQLGATSPMS 238

[Close]

BLAST of CmaCh17G005470 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-38
Identity = 99/228 (43.42%), Postives = 124/228 (54.39%), Query Frame = 0


Query: 28  YNDTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVVITDKTTGRSKGYGFVTFKDPDS 87
           + DTTFTK+FVGGLAW+TQ  TL+R+F+Q+G+ILEAVVITDK TGRSKGYGFVTF+DP++
Sbjct: 18  FGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77

Query: 88  AIRASQNPSPVIDGRTANCNLAS--------QHGV----AGRFRGSS----GIVTPHAYH 147
           A RA  +P+P+IDGR ANCNLAS        Q+ V     GR R  S     + +P   H
Sbjct: 78  ARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGSVQSPRGLH 137

Query: 148 IPSSSYIHQPTTQYS----YPLSGYGFAGYSQDIIHPLN--YYGAYRGQQFSPYYSGIGI 207
             S  Y   PT  Y     YP   YG   Y  D ++  +  +YG Y GQQ+   Y   G 
Sbjct: 138 FGSHPYHQPPTYNYQQGVVYP---YGVTPYGPDYMYSQSQGFYGPYMGQQYLQVYGVPGA 197

Query: 208 SEQARMFENLYPYYAQSSQGYAFGIQYPHLMHYPCLHQQQHGLTDILS 234
                       +    + GY  G  Y H    P  H  Q G T  +S
Sbjct: 198 VNSPGYQYGQLSHTIPGAHGYTAGQGYSH----PGSHVLQLGATSPMS 238

[Close]

BLAST of CmaCh17G005470 vs. TAIR 10
Match: AT1G33470.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 149.4 bits (376), Expect = 4.0e-36
Identity = 98/215 (45.58%), Postives = 125/215 (58.14%), Query Frame = 0


Query: 30  DTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVVITDKTTGRSKGYGFVTFKDPDSAI 89
           DTTFTK+FVGGLAW+T + +L+ YFEQFG+I+EAVVITDK++GRSKGYGFVTF DP++A 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 90  RASQNPSPVIDGRTANCNLAS-----------QHGVAGRFRGSSGIVTPHAYH------- 149
           +A  +P+PVIDGR ANCNLA+            HG  G  RG   + +P   H       
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGG-RGMK-VTSPFKTHFGTAATA 122

Query: 150 IPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLNYYGAYRG--QQFSPYYSGIGISEQA 209
           IPS       T  Y+ P   +GF+ YS D  +P +YY  Y G   Q   Y SG      A
Sbjct: 123 IPSPLPFSHYTLPYTNP---FGFSSYSMDYNYPTSYYNVYGGATAQHPMYGSGPMTGVAA 182

Query: 210 RMFENLYPY--YAQSS---QGYAFGIQYP-HLMHY 219
                 YPY  +A+ +    GYA  + YP H+ HY
Sbjct: 183 APAAGFYPYLQFAEGNGPVTGYA-PLHYPNHMFHY 211

[Close]

BLAST of CmaCh17G005470 vs. TAIR 10
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-34
Identity = 98/216 (45.37%), Postives = 125/216 (57.87%), Query Frame = 0


Query: 30  DTTFTKIFVGGLAWDTQRHTLKRYFEQFGEILEAVVITDKTTGRSKGYGFVTFKDPDSAI 89
           DTTFTK+FVGGLAW+T + +L+ YFEQFG+I+EAVVITDK++GRSKGYGFVTF DP++A 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 90  RASQNPSPVIDGRTANCNLAS-----------QHGVAGRFRGSSGIVTPHAYH------- 149
           +A  +P+PVIDGR ANCNLA+            HG  G  RG   + +P   H       
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGG-RGMK-VTSPFKTHFGTAATA 122

Query: 150 IPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPL-NYYGAYRG--QQFSPYYSGIGISEQ 209
           IPS       T  Y+ P   +GF+ YS D  +P  +YY  Y G   Q   Y SG      
Sbjct: 123 IPSPLPFSHYTLPYTNP---FGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVA 182

Query: 210 ARMFENLYPY--YAQSS---QGYAFGIQYP-HLMHY 219
           A      YPY  +A+ +    GYA  + YP H+ HY
Sbjct: 183 AAPAAGFYPYLQFAEGNGPVTGYA-PLHYPNHMFHY 212

The following BLAST results are available for this feature:

BLAST of CmaCh17G005470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	1.2e-24	44.30	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q62176	8.5e-23	57.61	RNA-binding protein 38 OS=Mus musculus OX=10090 GN=Rbm38 PE=1 SV=2	[more]
Q9H0Z9	1.5e-22	61.90	RNA-binding protein 38 OS=Homo sapiens OX=9606 GN=RBM38 PE=1 SV=2	[more]
Q6GQD3	5.5e-22	62.50	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9I8B3	5.5e-22	62.50	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]

BLAST of CmaCh17G005470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JYZ4	6.3e-154	100.00	RNA-binding protein 38-like OS=Cucurbita maxima OX=3661 GN=LOC111488693 PE=4 SV=...	[more]
A0A6J1EPB6	1.2e-133	90.77	RNA-binding protein 38-like OS=Cucurbita moschata OX=3662 GN=LOC111436341 PE=4 S...	[more]
A0A1S3CBZ0	2.1e-109	76.76	RNA-binding protein 24-B OS=Cucumis melo OX=3656 GN=LOC103498947 PE=4 SV=1	[more]
A0A0A0K998	4.4e-107	75.35	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087740 PE=4 SV...	[more]
A0A5A7TA32	7.3e-102	73.94	RNA-binding protein 24-B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of CmaCh17G005470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992358.1	1.3e-153	100.00	RNA-binding protein 38-like [Cucurbita maxima]	[more]
KAG6575302.1	3.2e-136	92.62	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022929861.1	2.6e-133	90.77	RNA-binding protein 38-like [Cucurbita moschata]	[more]
KAG7013834.1	2.2e-124	93.39	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_008460001.1	4.4e-109	76.76	PREDICTED: RNA-binding protein 24-B [Cucumis melo]	[more]

BLAST of CmaCh17G005470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46780.1	1.4e-49	42.47	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.1e-38	43.42	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.2	1.1e-38	43.42	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G33470.2	4.0e-36	45.58	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G33470.1	1.0e-34	45.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 35..107 e-value: 1.7E-23 score: 94.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 36..93 e-value: 7.5E-18 score: 64.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 34..111 score: 17.216459
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..124 e-value: 8.3E-25 score: 89.3
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 4..253
None	No IPR available	PANTHER	PTHR11176:SF33	SUBFAMILY NOT NAMED	coord: 4..253
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 34..109 e-value: 1.80091E-43 score: 140.443
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 33..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G005470.1	CmaCh17G005470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding