CmaCh17G005380 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G005380
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	major pollen allergen Ole e 6-like
Location	Cma_Chr17: 4230667 .. 4231019 (+)
RNA-Seq Expression	CmaCh17G005380
Synteny	CmaCh17G005380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGAAGATAATTGCAGTGTTGTTGGTGTGCATTGTGGTAATGGCTGCATTGCAGGTTTCGAGTGCAACTGAAAGCGTGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAGTGCGAGAAGGAATGTCTTGAGAAGGGCAATGACCAAAGCTTCTGTGAAGTTAAGTGCGATGAAGATTGTGATGAGAAAGAAGTCGCTGGTATACTCTCTTCCTTTTTAAATCATTTTATTCTCATCATTTTTATTTTCTCTTAATAATTAATTAATTGATTTTGTATTTGTATTTGTTTCTAGATAAGCTACACATCAAAGTCAAGAACTGA

mRNA sequence

ATGGCGAAGAAGATAATTGCAGTGTTGTTGGTGTGCATTGTGGTAATGGCTGCATTGCAGGTTTCGAGTGCAACTGAAAGCGTGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAGTGCGAGAAGGAATGTCTTGAGAAGGGCAATGACCAAAGCTTCTGTGAAGTTAAGTGCGATGAAGATTGTGATGAGAAAGAAGTCGCTGATAAGCTACACATCAAAGTCAAGAACTGA

Coding sequence (CDS)

ATGGCGAAGAAGATAATTGCAGTGTTGTTGGTGTGCATTGTGGTAATGGCTGCATTGCAGGTTTCGAGTGCAACTGAAAGCGTGAAGGAGGCCAAATATGAGGCTAAATTTGAAGCCAAGTATAGGTTATGCTACGAAAAGTGCGAGAAGGAATGTCTTGAGAAGGGCAATGACCAAAGCTTCTGTGAAGTTAAGTGCGATGAAGATTGTGATGAGAAAGAAGTCGCTGATAAGCTACACATCAAAGTCAAGAACTGA

Protein sequence

MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQSFCEVKCDEDCDEKEVADKLHIKVKN

Homology

[Close]

BLAST of CmaCh17G005380 vs. ExPASy Swiss-Prot
Match: O24172 (Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-07
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 0


Query: 38 EAKYRLCYEKCEKECLEKGNDQSFCEVKCDEDCDEKEVADKL-HIKVKN 86
          EA+++ CY+ C KEC +KGN  +FCE+KCD DC  K+V +KL + K KN
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKLENYKPKN 50

[Close]

BLAST of CmaCh17G005380 vs. ExPASy TrEMBL
Match: A0A6J1JVQ4 (major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488292 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS 60
          MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS
Sbjct: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS 60

Query: 61 FCEVKCDEDCDEKEVADKLHIKVKN 86
          FCEVKCDEDCDEKEVADKLHIKVKN
Sbjct: 61 FCEVKCDEDCDEKEVADKLHIKVKN 85

[Close]

BLAST of CmaCh17G005380 vs. ExPASy TrEMBL
Match: A0A6J1JXL5 (major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488756 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.0e-34
Identity = 81/85 (95.29%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS 60
          MAKK+IAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGN QS
Sbjct: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLHIKVKN 86
          FCEVKCDEDC EKE ADKLHIKVKN
Sbjct: 61 FCEVKCDEDCGEKEAADKLHIKVKN 85

[Close]

BLAST of CmaCh17G005380 vs. ExPASy TrEMBL
Match: A0A6J1EQ21 (major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.0e-33
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS 60
          MAKK+IAVLLVCIVV+AALQVSSATES KEAKYEAKFEAKYRLCYEKCEKECLEKGN QS
Sbjct: 1  MAKKMIAVLLVCIVVVAALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLHIKVKN 86
          FCEVKCDEDC EKE ADKLHIKVKN
Sbjct: 61 FCEVKCDEDCGEKEAADKLHIKVKN 85

[Close]

BLAST of CmaCh17G005380 vs. ExPASy TrEMBL
Match: A0A6J1JWQ7 (major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488152 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 9.5e-32
Identity = 77/81 (95.06%), Postives = 78/81 (96.30%), Query Frame = 0


Query: 5  IIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQSFCEV 64
          +IAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGN QSFCEV
Sbjct: 1  MIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQSFCEV 60

Query: 65 KCDEDCDEKEVADKLHIKVKN 86
          KCDEDC EKE ADKLHIKVKN
Sbjct: 61 KCDEDCGEKEAADKLHIKVKN 81

[Close]

BLAST of CmaCh17G005380 vs. ExPASy TrEMBL
Match: A0A5D3BCS2 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00230 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.2e-22
Identity = 57/83 (68.67%), Postives = 73/83 (87.95%), Query Frame = 0


Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS 60
          MAKK+IA+ L+CIVV+AALQ +SA +  + AKYEAKF+AKY+ C++ CEKECLE G+ QS
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLHIKV 84
          +CEVKCDEDC+EKEVADKLHI++
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIEL 83

[Close]

BLAST of CmaCh17G005380 vs. NCBI nr
Match: XP_022991759.1 (major pollen allergen Ole e 6-like [Cucurbita maxima])

HSP 1 Score: 161.0 bits (406), Expect = 4.5e-36
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS 60
          MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS
Sbjct: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS 60

Query: 61 FCEVKCDEDCDEKEVADKLHIKVKN 86
          FCEVKCDEDCDEKEVADKLHIKVKN
Sbjct: 61 FCEVKCDEDCDEKEVADKLHIKVKN 85

[Close]

BLAST of CmaCh17G005380 vs. NCBI nr
Match: XP_022992458.1 (major pollen allergen Ole e 6-like [Cucurbita maxima] >XP_022992459.1 major pollen allergen Ole e 6-like [Cucurbita maxima])

HSP 1 Score: 152.9 bits (385), Expect = 1.2e-33
Identity = 81/85 (95.29%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS 60
          MAKK+IAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGN QS
Sbjct: 1  MAKKMIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLHIKVKN 86
          FCEVKCDEDC EKE ADKLHIKVKN
Sbjct: 61 FCEVKCDEDCGEKEAADKLHIKVKN 85

[Close]

BLAST of CmaCh17G005380 vs. NCBI nr
Match: XP_023549457.1 (major pollen allergen Ole e 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.0 bits (380), Expect = 4.7e-33
Identity = 79/85 (92.94%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS 60
          MAKK+IAVLLVCIVV+ ALQVSSATES KEAKYEAKFEAKYRLCYEKCEKECLEKGN QS
Sbjct: 1  MAKKMIAVLLVCIVVVGALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLHIKVKN 86
          FCEVKCDEDCDEKE ADKLHIKVKN
Sbjct: 61 FCEVKCDEDCDEKEAADKLHIKVKN 85

[Close]

BLAST of CmaCh17G005380 vs. NCBI nr
Match: XP_023548654.1 (major pollen allergen Ole e 6-like [Cucurbita pepo subsp. pepo] >XP_023549436.1 major pollen allergen Ole e 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150.6 bits (379), Expect = 6.1e-33
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1  MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS 60
          MAKK+IAVLLVC+VV+ ALQVSSATES KEAKYEAKFEAKYRLCYEKCEKECLEKGN QS
Sbjct: 1  MAKKMIAVLLVCVVVVGALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 60

Query: 61 FCEVKCDEDCDEKEVADKLHIKVKN 86
          FCEVKCDEDCDEKE ADKLHIKVKN
Sbjct: 61 FCEVKCDEDCDEKEAADKLHIKVKN 85

[Close]

BLAST of CmaCh17G005380 vs. NCBI nr
Match: XP_023548386.1 (carotenoid cleavage dioxygenase 7, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150.6 bits (379), Expect = 6.1e-33
Identity = 78/85 (91.76%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 1   MAKKIIAVLLVCIVVMAALQVSSATESVKEAKYEAKFEAKYRLCYEKCEKECLEKGNDQS 60
           MAKK+IAVLLVC+VV+ ALQVSSATES KEAKYEAKFEAKYRLCYEKCEKECLEKGN QS
Sbjct: 616 MAKKMIAVLLVCVVVVGALQVSSATESAKEAKYEAKFEAKYRLCYEKCEKECLEKGNGQS 675

Query: 61  FCEVKCDEDCDEKEVADKLHIKVKN 86
           FCEVKCDEDCDEKE ADKLHIKVKN
Sbjct: 676 FCEVKCDEDCDEKEAADKLHIKVKN 700

The following BLAST results are available for this feature:

BLAST of CmaCh17G005380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24172	3.5e-07	53.06	Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1	[more]

BLAST of CmaCh17G005380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JVQ4	2.2e-36	100.00	major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488292 P...	[more]
A0A6J1JXL5	6.0e-34	95.29	major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488756 P...	[more]
A0A6J1EQ21	5.0e-33	92.94	major pollen allergen Ole e 6-like OS=Cucurbita moschata OX=3662 GN=LOC111436354...	[more]
A0A6J1JWQ7	9.5e-32	95.06	major pollen allergen Ole e 6-like OS=Cucurbita maxima OX=3661 GN=LOC111488152 P...	[more]
A0A5D3BCS2	5.2e-22	68.67	Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of CmaCh17G005380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991759.1	4.5e-36	100.00	major pollen allergen Ole e 6-like [Cucurbita maxima]	[more]
XP_022992458.1	1.2e-33	95.29	major pollen allergen Ole e 6-like [Cucurbita maxima] >XP_022992459.1 major poll...	[more]
XP_023549457.1	4.7e-33	92.94	major pollen allergen Ole e 6-like [Cucurbita pepo subsp. pepo]	[more]
XP_023548654.1	6.1e-33	91.76	major pollen allergen Ole e 6-like [Cucurbita pepo subsp. pepo] >XP_023549436.1 ...	[more]
XP_023548386.1	6.1e-33	91.76	carotenoid cleavage dioxygenase 7, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh17G005380 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	1.10.287.720	Pollen allergen ole e 6	coord: 37..85 e-value: 2.0E-15 score: 58.0
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	111388	Pollen allergen ole e 6	coord: 38..79
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole_e_6	coord: 44..80 e-value: 9.1E-12 score: 44.7
IPR015333	Pollen allergen ole e 6	PANTHER	PTHR35632	MAJOR POLLEN ALLERGEN OLE E 6-LIKE	coord: 1..84
None	No IPR available	PANTHER	PTHR35632:SF5	SUBFAMILY NOT NAMED	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G005380.1	CmaCh17G005380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016121	carotene catabolic process
biological_process	GO:0009733	response to auxin
biological_process	GO:0010223	secondary shoot formation
biological_process	GO:1901601	strigolactone biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen