CmaCh17G004790 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G004790
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr17: 2940373 .. 2942165 (+)
RNA-Seq Expression	CmaCh17G004790
Synteny	CmaCh17G004790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGGATATCTTCACCAAGGACGATGCATGGTTTGATGTTGAAGAAACCTTGTTTAAAGGGAAAAATGTCTTACTTTTTGCTACCAAAATAATATATTATGACTCTTCCCTTCATATATTAATACCAAAATTATGCATTCCAATGCATAAAGGTGAAGGGGAGCACGCAACAAACCCTAACTCCAACACAAATCAACAAAATATTGCTTATCTTGATTCCACTAATTTCTTCTCTTATCTAGAAGAAATATCTTGTGGGTTTCTATGCAGTTTCTGAGGAGATCTATAATTTCCAAGCCATTGCCTTCTTTATCTCATAATAATATGTCAATCTCTTTCTATCTTCTTCTATTTCTTGTTTGCATTTCGTTTCAAGCATGCCATTCACGGACTCTTCAATTAGGTGATATCAAATTTCAGAAGAAATTTCAAGCTCCTATTAAGGTTGGTACCTAAACTATGCAAAAACTATGAATTTGCTATTATGGGTTGGTGGGTGTTGGTTTTGTTGTTCAATGTAATCGATGAAGTCGATCGTTCAATTTGTTCGATTAGAGATCTCCATTGTTTTGGAAGGTTTGTAGAGAACGAACTGACTGATTATGTGAGATCTCATGTCGGTTGGAGAGGAGAACGAAACATTCCTTATAAGGGTTGTGGAAACTTCTCCCTAGCAGACGCGTTTTAGAACCGTGAGATTGACGGTGGTATGTAATAAGCCAAAGCGGATAATATTTGCTAGTGTTGGGCTTGGACTGTTACAAATAGTATCAGAGTCATACACTGAATGATGTGCTAGTGAGGATGATGGGTCCCCAAGAGAGGGTGGAGTGAGATCCCATATTGGTTGGAGAAGGGAACTTTTCTTACAAGGGTGTTGAAACTTCTTCCTAGTAGACGGGTTAAAAAATCTTGAAGGCTGACAACGATACGTAATGGGCTAAAACGGATAATATTTGCTAGTGGTGGGCTCGGGCTATTACAAATGGTATTGAAACTGGGTTATGTACCAACGAGAACGATGGGTCCCCAAGAGGGTGGATTGTGAGATCTCACATCCGTTGTAGAGAGAAACAAAGCATTTCTTATAAGATGTGGAAATCTCTTCCTAGCCAACACATTTTAAAACCGTGAGACTACTGACGATACGTAAAGTCAAAACGGACAATATTTGTTAGTAGTGGGCATGAGCTGTTACAAATGGTATAAGAGTCCAACATTGAGTTGTCGGCTAGCCATAACGATGGGTCTTCAAGATGGTGGATTTTGAGATTCCACGTCGGTTGAAGAGGGAAACGAAACATTCCTTGTAAGGGTGTGGAAACCTCTCCCTAACAAATGTATTTTAAAACTGTGAGGTTGACTGCAATGCATAATAGACCAAAACAGACAATATTTACTAGCGGTGGACTTGGTCCGTTAGGACCAAATGGGTCAAATCGAACATCCTAGACCGTGACCGCAACAAATGGGTTCAAGCGAACCATTAGAAATCAGTTTATGTTGAAGATAACCCAGTTTTTGTTTTTGTTATCATGTTTTAGGGAAGATTGGGGAAGATAGCTCTTTCATGGGATGAACCAGCAATAGAATGCATGAAGCTATCAGCTTCAAAGGCAGGTGAAGAGAGAGAAAGTGTAAGATCCAAAAGAACAAGATACAAGAGGAGAAGGAAGCAGGTGAAGAGATTGGAAGAATTAAAGAATGATCACAAGAAAGTTAAAGGAAACAATGGCGTTTTCAGTTCAGATTATGAACATGCTAGGACTCATCCTCCTTCTCACAACTAA

mRNA sequence

ATGGGGGGATATCTTCACCAAGGACGATGCATGGGAAGATTGGGGAAGATAGCTCTTTCATGGGATGAACCAGCAATAGAATGCATGAAGCTATCAGCTTCAAAGGCAGGTGAAGAGAGAGAAAGTGTAAGATCCAAAAGAACAAGATACAAGAGGAGAAGGAAGCAGGTGAAGAGATTGGAAGAATTAAAGAATGATCACAAGAAAGTTAAAGGAAACAATGGCGTTTTCAGTTCAGATTATGAACATGCTAGGACTCATCCTCCTTCTCACAACTAA

Coding sequence (CDS)

ATGGGGGGATATCTTCACCAAGGACGATGCATGGGAAGATTGGGGAAGATAGCTCTTTCATGGGATGAACCAGCAATAGAATGCATGAAGCTATCAGCTTCAAAGGCAGGTGAAGAGAGAGAAAGTGTAAGATCCAAAAGAACAAGATACAAGAGGAGAAGGAAGCAGGTGAAGAGATTGGAAGAATTAAAGAATGATCACAAGAAAGTTAAAGGAAACAATGGCGTTTTCAGTTCAGATTATGAACATGCTAGGACTCATCCTCCTTCTCACAACTAA

Protein sequence

MGGYLHQGRCMGRLGKIALSWDEPAIECMKLSASKAGEERESVRSKRTRYKRRRKQVKRLEELKNDHKKVKGNNGVFSSDYEHARTHPPSHN

Homology

[Close]

BLAST of CmaCh17G004790 vs. ExPASy TrEMBL
Match: A0A0A0KA38 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109655 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.6e-16
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 14 LGKIALSWDEPAIECMKLSASKAGEERESVRSKRTRYKR-RRKQVKRL--EELK------ 73
          +GK+ +S +E AIECMKLS+ K  EE ES  SKR +YKR RR+Q+KRL  ++L+      
Sbjct: 1  MGKMVISREEAAIECMKLSSPKPAEEEESFGSKRQKYKRIRREQLKRLIRDQLEKVPWKV 60

Query: 74 ----NDHKKVKGNNGVFSSDYEHARTHPPSHN 93
              +DHKKVKGN+GVFSSDYEHARTHPPSHN
Sbjct: 61 PHDDDDHKKVKGNDGVFSSDYEHARTHPPSHN 92

[Close]

BLAST of CmaCh17G004790 vs. ExPASy TrEMBL
Match: A0A6J1CZK4 (uncharacterized protein LOC111016228 OS=Momordica charantia OX=3673 GN=LOC111016228 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.7e-13
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 12  GRLGKIAL-SWDEPAIECMKLSASKAGEE-RESVRSKRT-RYKRRRKQVKRLEE------ 71
           GRL ++ L SW++ A E MKLS+SKAGEE RE+ RSKR+ +YK+R+KQ+KR  E      
Sbjct: 51  GRLARMVLISWEKAATENMKLSSSKAGEEQRETFRSKRSNKYKKRKKQMKRSVEDFKKVS 110

Query: 72  --LKNDH---KKVKGNNGVFSSDYEHARTHPPSHN 93
             L + H   KK+K NNGVF SDYEHARTHPPSHN
Sbjct: 111 WRLPHHHDLSKKLKHNNGVFDSDYEHARTHPPSHN 145

[Close]

BLAST of CmaCh17G004790 vs. NCBI nr
Match: XP_031743890.1 (uncharacterized protein LOC116404719 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 8.7e-17
Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 7   QGRCMGRLGKIALSWDEPAIECMKLSASKAGEERESVRSKRTRYKR-RRKQVKRL--EEL 66
           Q    G++GK+ +S +E AIECMKLS+ K  EE ES  SKR +YKR RR+Q+KRL  ++L
Sbjct: 38  QAPIKGKMGKMVISREEAAIECMKLSSPKPAEEEESFGSKRQKYKRIRREQLKRLIRDQL 97

Query: 67  K----------NDHKKVKGNNGVFSSDYEHARTHPPSHN 93
           +          +DHKKVKGN+GVFSSDYEHARTHPPSHN
Sbjct: 98  EKVPWKVPHDDDDHKKVKGNDGVFSSDYEHARTHPPSHN 136

[Close]

BLAST of CmaCh17G004790 vs. NCBI nr
Match: XP_022147230.1 (uncharacterized protein LOC111016228 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 7.6e-13
Identity = 56/95 (58.95%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 12  GRLGKIAL-SWDEPAIECMKLSASKAGEE-RESVRSKRT-RYKRRRKQVKRLEE------ 71
           GRL ++ L SW++ A E MKLS+SKAGEE RE+ RSKR+ +YK+R+KQ+KR  E      
Sbjct: 51  GRLARMVLISWEKAATENMKLSSSKAGEEQRETFRSKRSNKYKKRKKQMKRSVEDFKKVS 110

Query: 72  --LKNDH---KKVKGNNGVFSSDYEHARTHPPSHN 93
             L + H   KK+K NNGVF SDYEHARTHPPSHN
Sbjct: 111 WRLPHHHDLSKKLKHNNGVFDSDYEHARTHPPSHN 145

[Close]

BLAST of CmaCh17G004790 vs. NCBI nr
Match: KAE8646794.1 (hypothetical protein Csa_005459, partial [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-05
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 12 GRLGKIALSWDEPAIECMKLSASKAGEERESVRSKRTRYKR-RRKQVKRL--EELK---- 71
          G++GK+ +S +E AIECMKLS+ K  EE ES  SKR +YKR RR+Q+KRL  ++L+    
Sbjct: 1  GKMGKMVISREEAAIECMKLSSPKPAEEEESFGSKRQKYKRIRREQLKRLIRDQLEKVPW 60

Query: 72 ------NDHKKVKGNN 75
                +DHKKVKGN+
Sbjct: 61 KVPHDDDDHKKVKGND 76

The following BLAST results are available for this feature:

BLAST of CmaCh17G004790 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G004790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA38	4.6e-16	60.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109655 PE=4 SV=1	[more]
A0A6J1CZK4	3.7e-13	58.95	uncharacterized protein LOC111016228 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of CmaCh17G004790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031743890.1	8.7e-17	58.59	uncharacterized protein LOC116404719 [Cucumis sativus]	[more]
XP_022147230.1	7.6e-13	58.95	uncharacterized protein LOC111016228 [Momordica charantia]	[more]
KAE8646794.1	4.5e-05	51.32	hypothetical protein Csa_005459, partial [Cucumis sativus]	[more]

BLAST of CmaCh17G004790 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 53..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G004790.1	CmaCh17G004790.1	mRNA