CmaCh17G003910 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAGGTGATTCCATTGAAAGCCCTAAACCTCGCGAGAGAGAAATCTTTGGATGGCTACGAGCAACAACCTCCATGGCTCTGGTACTCCTCTTCCTTCCATGTTTCCTTTGTGTTATGTGGTGTAGATTTTTTAGAATTGAGTAATCCTTTACGAACAAGGAGGCACGCTCATTGATCTTCTCTTTTTTACTTCCTTTTAATTTCCTGTTTGCTGTCATATTACCAGAAATGTATGATCGTGAACCGAATTCACATCCAGCAGGTTATTTAAGATGGACGATTTTTCTTGTTCTTAGTTGCGCTATAATTATCTCTTTGAGTTGAACCTTCTATTGTTTGTTGAAGTCTAAGGAGCGTATTGAGGATTTCTAGTATTGAGATAAAGTTATGAATTCTCTGTGGGCTCAACGAGGGGAGAAAAGTATTTTAATTCTATATGTTCGTCTTTTGGTACTGGTCAAAATTTTCGGAATTTCATTGAGTGGTTAAGTCTGCATAAAGTTGTAGGCGTCGAAGATTTGCGATACTTGGTGGTGGGTGCTCGAAATAACTTACCTTAACCCCCTTTTTGAAACCTTTTTTTTTTTTTTTTGTTTGCTATAATTGTATTCAAGCCTTCCGGATTATATAAACTATAATGTATAGTTTTGGTTTTTTTTCTTCTTTCCCTAACTAGCTGCTTAAATTTCATAAGTACATCCTGTTTACCGTCTCTCTTTTTTTTTTTTACAATACCTTCTTATAAAGAGTTCCTTCAATTTTCAATGTTACAATAGTTAATTTCCAGACCTATAGGGATTTTTCATTATTTCATGTTTTGACCTTCGAAATTATGTTTTCGGTCTGTTCTGAGATGTGGAATTTATATTTTGAAGATATTTTCTCTTATGAGTAAGATTATTTGAATGAACGAAAGTCATTGTTCTCCTTGAAATACTGGAAAGAAGAGTCTTGCTGTTGATTGGCACTTTATCGTCTTTTGGTTGTCTTCTGGTTATCTTTATTTTCTGGACCGTGTTAAGTGTTTAATTTCCATTAATACTTAATACTCTTTATGTCACTTCATTATCAAAGCATTAGTTGATCCTCTTTTATCAAGTATCGATCCATGTATAGTAACATTAAATGCGAGGTTTGCAGCTTTTCCTATTTTTCCTCAGAAGGTTGACTTTTTTCATTTTATATGTCAGATTCTGTGAATGAAATGCTAATGGAATCGGCTAAAGAAGGATCTGGTCATATGAGTTCAGAGGGAAAGCCCAATGACACAGGTGAGCAGAGGAAGCAGACTAGAAGTCGTTTATCGTTTTAATTCTTTTCCTTGCTATACATTTTTTTATTTGCATGTTAATTTGTTGATTAAGAGGTATGATGATATTCTTCTTTATTATGCTAGAAATAAAAGCGCGTGTCAATGCCATGTGGGAGCAAATGAATAAAGGGGTGTCTAGTAAAACACTAAAAGGTTTGTCAACCAAACGAAGTCCAGTGGTGAATAAAAACTCAAAGAAACCATCCAATGTAAAAAATCACATTCTGCTCTTTCATGATGAGGCAGCTCAAAATTTAGGAAAAATATCTCTTACTTTTTCTCTCTCCATCTTCCCCGTGTCTAGAATTGGATTGCATATCTAGGTATGGCGTCAAAGAAGATTGAACCTCAAGAAAAAGATACATTATCAGAAGGACCCAAGGTTCTGCAGGACAGTTCCATGGATGATGCTAAGATGCTTGCTGCTACTGCTCTCTCAGCTGTTAGGGATGCTACAGCTACCATTTCTGGCAGGGGGAAAGTTGAGGTGCCAATACTTTCATATCTATTTTTATCTGTTTTTCTACCCTTTTAGGTGTGTGATTATCTAGGCACTTGGTTTTCTATTGTTACGAAACATATAGAGCTGAAGATGGATTTATCTATGTATGTCATTTGGTCAGTTGGTTGAATAATTGTTTAGATAATTTCTTCGTTGTTGGTAATGAAGGAGAACTTCCTTCTGTCATGATGCATGGGTAGGTAAGAAACACCCTTCTACTTCCATCTCTCTATCTCTCTCTTCCTTCCTCTCCTTCTCCCCTCTGTCCTTTTTTTGGTGATTTTTCTACCAAAAAATGTTTTGGTCTTTGATGCGTGTCAATAAGAAACTCATTCTTGGAGAATGGGTGTGAGAAGAAACTTACGGAAGGAGGAAAAGAGATTGCAGTTGTACTTGACTTGACTAATGAAATGAATCAAGGAAAGATAAAAGAGAATAAAAAGTGGATCTGTCTAGAACATTCTCGGTGAAATTTTTGGTGAAGCTACTTTACTGAAGGGTAGATACTTGCTAGAAACTGAAAATCCGAAAGAAGTAATTGTTTTGTTGTGGATACTAGAGTTGGGTGGCATTAATGCAACATATTACTTGGTGAAAAAGTGTCCCCTGTTGCTTTTAGGGAAAAAAAAAAAAAAAAAGAATAAAAAGGGTCCTTGTTGCTTTAAGCTTCCTACTGCATTTTTTGCATACAGGCAGGGAAGGATCAAACGTACTTGTCTTTCTACGTTCTTATGGCAGAAAACGTTGGGATAATTCTATGTATTGTGGTGTTTCATAGCGGTTGGAAAAATTCCCTAACGAGGGTAACATATATGATATAACCTTAACCTCGTAGTATAAAGCTCAAAGCCAAAGCTAAATTGTTATGGAGTGCCATTAGACCAATCATTGAGAGGATTTGATTTGAAAGAAATCAAATTAGAGAAGTTTTTAGAATTGGTGGAGAATGAATATTACAAAATATCAAGCCTCTTCTTGGTGTGGCCTGTCTATTGTACTTTGTAACCATACCTCCAATATAATTAAATTTTACTTCGGGGTTTTTCTTTATACAATGAGATTGGTTAGGCTTACATTTTCCTTTTGTAAGTTCTGATAATTGGGTGCTACTTTGCACTCTCCTAATAGGGAGTCTCAACTTCCCAAGTATCACCAGAAAGTTGTTTACTGCTCAAAAAGTAAATATATTAATGACCCTGGTGTTAATTCTGAAAGTTTGGCTTGATTATATGACTACCTAGCCTGTCTATGGATAATCGTTGCGTGTTTCTTCTGGCATTTAGGACAATAGTTGTTGTGGTATTTCCTTTTCTTTGGTTAATTACTAGTTTTGGTGGGTAGGAGAATCAAAAGGTGTGAATCAAGATTTTACGACGTCATGGGTGAAGTTCGGTAAGTCAGGGCTTGGGTGGGATGTATGGGAGAGTCCTCCAAGGGGTTGATGGTCCTGATGTTTGATAACTGTACTTGCTTTATGATATCATCTTTAATAAAACCAGCAAGTTTTGCATTGTTTATATTGATGATCTGTTAGTTGAAGAACACAAACCATTGTCCTTTTACTTTTAACAGATCACAGAGATTAGGGACTTCGCAGGCCAAAATGTTGAAATTAAGAAGTTTGTAGATGCTGATTCTAAGGAAGCATACGAGAAGATGAAGGCACCTGCTACTTCAGCTGTTGATGCAATCCTGGAACAAATCAAGAAGAAACAAAAGCTTAGTGTTCTTGACAAGACAAAAAAGGACTGGGGAGAGTTCAAGGAAGAAACCAAGGGGTTGGAAGAGGACTTGGAATCTTACAAGAAGAGCTCAAACCAGTATCTCGATAAAGTTTCGTTCTTGCAGCGAGCCGATTACAGGGAGTTTGAACGAGAGAGGGATGCACGGTTGGCTCTGCAGGCCAGGAGGAGGCCTGATATGCGAGAGGAGCCATGATTAATAAACCATCAAGAGAAGCAAGCTCTGTGGAGAATGTGCCGTAAGTATTTAAGGTTGTTCTTGAATTTCTTGTGCGTATCACTTCCAATAGGCAGTACAGTCGGCTCAGATGATTTGGAAGTGAGTAATGGTTCGTTGTGTGCCCATGGCGTATTCTGATATCTGCGTGACAAAAACTGCAAATCATGCTTCGACGTAAATCTTGGTCTCCTACCATCTGAAAGATTTCTTGTAGCACTTATCTTTCATTCTTCTGTTGTGTACAGACAAATCTTGGAGCTACGGTTGGTTACTCAACGGATTAAGGCATCTATACTAATATGAGCATAGCTTAGCCAGTAGTATGTGTTATCAACAAAAAGGTCAGAGGTTTGAATTTTTATCTCTCGTATTATTGAACTAAAAAAATGATTAAAGCATATATTCTTACGAGAGAGGGTAGATATATTTATTTACCATGCAAGGTAGGAGTTTCCACAATAGAGGTAGAGATATTTATTTACCATGCAAGGTAGGAG CAGGTGATTCCATTGAAAGCCCTAAACCTCGCGAGAGAGAAATCTTTGGATGGCTACGAGCAACAACCTCCATGGCTCTGATTCTGTGAATGAAATGCTAATGGAATCGGCTAAAGAAGGATCTGGTCATATGAGTTCAGAGGGAAAGCCCAATGACACAGAAATAAAAGCGCGTGTCAATGCCATGTGGGAGCAAATGAATAAAGGGGTGTCTAGTAAAACACTAAAAGGTTTGTCAACCAAACGAAGTCCAGTGGTGAATAAAAACTCAAAGAAACCATCCAATAATTGGATTGCATATCTAGGTATGGCGTCAAAGAAGATTGAACCTCAAGAAAAAGATACATTATCAGAAGGACCCAAGGTTCTGCAGGACAGTTCCATGGATGATGCTAAGATGCTTGCTGCTACTGCTCTCTCAGCTGTTAGGGATGCTACAGCTACCATTTCTGGCAGGGGGAAAGTTGAGATCACAGAGATTAGGGACTTCGCAGGCCAAAATGTTGAAATTAAGAAGTTTGTAGATGCTGATTCTAAGGAAGCATACGAGAAGATGAAGGCACCTGCTACTTCAGCTGTTGATGCAATCCTGGAACAAATCAAGAAGAAACAAAAGCTTAGTGTTCTTGACAAGACAAAAAAGGACTGGGGAGAGTTCAAGGAAGAAACCAAGGGGTTGGAAGAGGACTTGGAATCTTACAAGAAGAGCTCAAACCAGTATCTCGATAAAGTTTCGTTCTTGCAGCGAGCCGATTACAGGGAGTTTGAACGAGAGAGGGATGCACGGTTGGCTCTGCAGGCCAGGAGGAGGCCTGATATGCGAGAGGAGCCATGATTAATAAACCATCAAGAGAAGCAAGCTCTGTGGAGAATGTGCCGTAAGTATTTAAGGTTGTTCTTGAATTTCTTGTGCGTATCACTTCCAATAGGCAGTACAGTCGGCTCAGATGATTTGGAAGTGAGTAATGGTTCGTTGTGTGCCCATGGCGTATTCTGATATCTGCGTGACAAAAACTGCAAATCATGCTTCGACGTAAATCTTGGTCTCCTACCATCTGAAAGATTTCTTGTAGCACTTATCTTTCATTCTTCTGTTGTGTACAGACAAATCTTGGAGCTACGGTTGGTTACTCAACGGATTAAGGCATCTATACTAATATGAGCATAGCTTAGCCAGTAGTATGTGTTATCAACAAAAAGGTCAGAGGTTTGAATTTTTATCTCTCGTATTATTGAACTAAAAAAATGATTAAAGCATATATTCTTACGAGAGAGGGTAGATATATTTATTTACCATGCAAGGTAGGAGTTTCCACAATAGAGGTAGAGATATTTATTTACCATGCAAGGTAGGAG ATGGCTACGAGCAACAACCTCCATGGCTCTGATTCTGTGAATGAAATGCTAATGGAATCGGCTAAAGAAGGATCTGGTCATATGAGTTCAGAGGGAAAGCCCAATGACACAGAAATAAAAGCGCGTGTCAATGCCATGTGGGAGCAAATGAATAAAGGGGTGTCTAGTAAAACACTAAAAGGTTTGTCAACCAAACGAAGTCCAGTGGTGAATAAAAACTCAAAGAAACCATCCAATAATTGGATTGCATATCTAGGTATGGCGTCAAAGAAGATTGAACCTCAAGAAAAAGATACATTATCAGAAGGACCCAAGGTTCTGCAGGACAGTTCCATGGATGATGCTAAGATGCTTGCTGCTACTGCTCTCTCAGCTGTTAGGGATGCTACAGCTACCATTTCTGGCAGGGGGAAAGTTGAGATCACAGAGATTAGGGACTTCGCAGGCCAAAATGTTGAAATTAAGAAGTTTGTAGATGCTGATTCTAAGGAAGCATACGAGAAGATGAAGGCACCTGCTACTTCAGCTGTTGATGCAATCCTGGAACAAATCAAGAAGAAACAAAAGCTTAGTGTTCTTGACAAGACAAAAAAGGACTGGGGAGAGTTCAAGGAAGAAACCAAGGGGTTGGAAGAGGACTTGGAATCTTACAAGAAGAGCTCAAACCAGTATCTCGATAAAGTTTCGTTCTTGCAGCGAGCCGATTACAGGGAGTTTGAACGAGAGAGGGATGCACGGTTGGCTCTGCAGGCCAGGAGGAGGCCTGATATGCGAGAGGAGCCATGA MATSNNLHGSDSVNEMLMESAKEGSGHMSSEGKPNDTEIKARVNAMWEQMNKGVSSKTLKGLSTKRSPVVNKNSKKPSNNWIAYLGMASKKIEPQEKDTLSEGPKVLQDSSMDDAKMLAATALSAVRDATATISGRGKVEITEIRDFAGQNVEIKKFVDADSKEAYEKMKAPATSAVDAILEQIKKKQKLSVLDKTKKDWGEFKEETKGLEEDLESYKKSSNQYLDKVSFLQRADYREFERERDARLALQARRRPDMREEP Homology
BLAST of CmaCh17G003910 vs. ExPASy Swiss-Prot
Match: Q75QI0 (Craniofacial development protein 1 OS=Gallus gallus OX=9031 GN=CFDP1 PE=2 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 9.1e-14 Identity = 52/131 (39.69%), Postives = 81/131 (61.83%), Query Frame = 0
BLAST of CmaCh17G003910 vs. ExPASy Swiss-Prot
Match: O88271 (Craniofacial development protein 1 OS=Mus musculus OX=10090 GN=Cfdp1 PE=1 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 7.7e-13 Identity = 66/204 (32.35%), Postives = 104/204 (50.98%), Query Frame = 0
BLAST of CmaCh17G003910 vs. ExPASy Swiss-Prot
Match: Q75UQ2 (Craniofacial development protein 1 OS=Rattus norvegicus OX=10116 GN=Cfdp1 PE=1 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.7e-12 Identity = 64/198 (32.32%), Postives = 100/198 (50.51%), Query Frame = 0
BLAST of CmaCh17G003910 vs. ExPASy Swiss-Prot
Match: Q9UEE9 (Craniofacial development protein 1 OS=Homo sapiens OX=9606 GN=CFDP1 PE=1 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 5.0e-12 Identity = 74/255 (29.02%), Postives = 119/255 (46.67%), Query Frame = 0
BLAST of CmaCh17G003910 vs. ExPASy Swiss-Prot
Match: Q8HXY9 (Craniofacial development protein 1 OS=Bos taurus OX=9913 GN=CFDP1 PE=2 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 2.5e-11 Identity = 79/254 (31.10%), Postives = 118/254 (46.46%), Query Frame = 0
BLAST of CmaCh17G003910 vs. ExPASy TrEMBL
Match: A0A6J1KYB0 (craniofacial development protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499305 PE=4 SV=1) HSP 1 Score: 485.7 bits (1249), Expect = 1.2e-133 Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
BLAST of CmaCh17G003910 vs. ExPASy TrEMBL
Match: A0A6J1H4U3 (craniofacial development protein 1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460409 PE=4 SV=1) HSP 1 Score: 481.5 bits (1238), Expect = 2.2e-132 Identity = 258/261 (98.85%), Postives = 261/261 (100.00%), Query Frame = 0
BLAST of CmaCh17G003910 vs. ExPASy TrEMBL
Match: A0A6J1L2Q7 (craniofacial development protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499305 PE=4 SV=1) HSP 1 Score: 470.7 bits (1210), Expect = 4.0e-129 Identity = 253/256 (98.83%), Postives = 254/256 (99.22%), Query Frame = 0
BLAST of CmaCh17G003910 vs. ExPASy TrEMBL
Match: A0A6J1KWE6 (craniofacial development protein 1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111499305 PE=4 SV=1) HSP 1 Score: 458.4 bits (1178), Expect = 2.0e-125 Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0
BLAST of CmaCh17G003910 vs. ExPASy TrEMBL
Match: A0A6J1H5W9 (craniofacial development protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460409 PE=4 SV=1) HSP 1 Score: 454.1 bits (1167), Expect = 3.8e-124 Identity = 243/246 (98.78%), Postives = 246/246 (100.00%), Query Frame = 0
BLAST of CmaCh17G003910 vs. NCBI nr
Match: XP_023006641.1 (craniofacial development protein 1 isoform X2 [Cucurbita maxima]) HSP 1 Score: 485.7 bits (1249), Expect = 2.5e-133 Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0
BLAST of CmaCh17G003910 vs. NCBI nr
Match: XP_022959426.1 (craniofacial development protein 1 isoform X1 [Cucurbita moschata]) HSP 1 Score: 481.5 bits (1238), Expect = 4.6e-132 Identity = 258/261 (98.85%), Postives = 261/261 (100.00%), Query Frame = 0
BLAST of CmaCh17G003910 vs. NCBI nr
Match: XP_023547915.1 (craniofacial development protein 1-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 479.9 bits (1234), Expect = 1.4e-131 Identity = 257/261 (98.47%), Postives = 261/261 (100.00%), Query Frame = 0
BLAST of CmaCh17G003910 vs. NCBI nr
Match: XP_023006639.1 (craniofacial development protein 1 isoform X1 [Cucurbita maxima] >XP_023006640.1 craniofacial development protein 1 isoform X1 [Cucurbita maxima]) HSP 1 Score: 470.7 bits (1210), Expect = 8.2e-129 Identity = 253/256 (98.83%), Postives = 254/256 (99.22%), Query Frame = 0
BLAST of CmaCh17G003910 vs. NCBI nr
Match: XP_023547913.1 (craniofacial development protein 1-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023547914.1 craniofacial development protein 1-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 464.9 bits (1195), Expect = 4.5e-127 Identity = 249/256 (97.27%), Postives = 254/256 (99.22%), Query Frame = 0
BLAST of CmaCh17G003910 vs. TAIR 10
Match: AT5G30490.1 (CONTAINS InterPro DOMAIN/s: Craniofacial development protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast hits to 324 proteins in 149 species: Archae - 0; Bacteria - 18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). ) HSP 1 Score: 212.6 bits (540), Expect = 3.7e-55 Identity = 134/244 (54.92%), Postives = 177/244 (72.54%), Query Frame = 0
BLAST of CmaCh17G003910 vs. TAIR 10
Match: AT5G30490.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Craniofacial development protein 1/Bucentaur (InterPro:IPR011421); Has 333 Blast hits to 324 proteins in 149 species: Archae - 0; Bacteria - 18; Metazoa - 117; Fungi - 96; Plants - 49; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). ) HSP 1 Score: 212.6 bits (540), Expect = 3.7e-55 Identity = 134/244 (54.92%), Postives = 177/244 (72.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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