CmaCh17G003890 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh17G003890
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description30S ribosomal protein S1, chloroplastic
LocationCma_Chr17: 2196095 .. 2200635 (+)
RNA-Seq ExpressionCmaCh17G003890
SyntenyCmaCh17G003890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAATTTCTCGCCGGAGCAGAAGATCAGGCGAGGGGATATGAGCTCATTGGCGCATCAACTTTGTGGATTAAGGAGTTCCCCTCTTTCTTCAACGCCGATTTCAACTCGGAAGCGCTTTTCTCCGGTAGTTTCTGCTGCAGCTTCCCCTACTCCCATTTCCAATGCGCAGACCAAAGAGCGCCTTAAGCTCAAGCAACTCTTCAAGGAAGCTTATGAACGTTGCTGTATTACCCCCATGGATGGCGTCTCCTTCACGCTTGAGGACTTCCATGCTTCTCTTGCGAATTACGACTTTGTTTCGGAAATCGGAACCAAGGTTAATCTGCTATTCCAGTTTCTTTCTTCTTCGTTTAGGTATTTGTTGTTTTTAGTCGTGGATAATTTTCTGTTCGATTTCCAGAACTGCGCGTTGTCAATACTCGTGCATTATTATCTTAACCTTCGTCGATTACGTTAGCGGAAATCATCGCTTTACAAAATCACTTTTATCTTTGTTTATGTAAAGGCGACTAGGGAATAATGGAATTATACGTCTTTGTTCGTTTTAGGGTACTGCTTGTCATGTACGAGGTTATGATTATTGAGCATTCCGTTGTTGAATTTTGGGCATAGATCGAGAAAAGTATAACTACGTGACTGGATTTGCGAAAAATTTTATTTCTGGAAGATTTTCTTTCGTTAGGTGGTTGTAACATCTCGATACACCAAATGTCATCAATCATTCCCAATTTCAAGAAACGTTCATCCTTACGCGTACAAAGTTTGAGAGTTTTCAATAGTTCCACCGAGCAAAAGTTGATTACAGAAAGAATTGGGCTAAACATTTCGAAAATTTGTGTCTTACAGCTGCAACTATGCAACTATTTAACTACCATCAGTTTATAGCCACCACAAATAAACCAGCTTAGTTAGGTAAACTTTAACCGACTAACTTTTTGGCTCCAGTATCAGATAACTAACATAAATCTGTGTCATTAATTTCCTTGATGTTTGCTCATGCATCTCATGAGCTAACGGATAACAGTTAGCTTCTCAATAAGTTCAAGTGATTGACTTTTACCAGTGTCTTGTATTCTCAGGTGAAAGGTACTGTATTCTCTACCGATGCTAATGGGGCACTAGTTGATACTTCTGCAAAGGGAACTGCATACTTGCCCACCCAAGAAGCATGCATTTTTAATATAAGACATGTAGAAGAGGCAGGCATATATCCTGGGTTAGAAGAGGAGTTTGTAATTATTGGTGGACAGGAACAGGAAGATGAAGGCAGCCTAATTCTGAGTTTGAGAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTTCAAGCTGAGGATTTTGTTATCAAGGGTAAGGTGGGTTCTGCAAGATATATCTTGCTTCTGTAATTTCATTTTTTCCTTATATTGTTGGTTCAGATCTTTCAATCTTGTTATGCCAGTAGTATTCATGAGACCATTGCCACGGCTTTTCTTGAACCAGATTTATTCTATATGTCGTTCAATTGTGTTTTGATGAATTGTGGAGTAGTATTCATGTGACAATTGCCATTCATCTCTTTGAAGCTTCTCAAGTTCATAACCTAGTTGCAGGGCGGAGGCAACTAATGTTTTATCGTCTTTGTCAACCACTACAAACATGTTTTATGTAATATTAATCATCCTTGTCATTCACGGAATAATTTAAGATTTTGAACTTGTTTTCACCATTTTCTACTTTTTCTATATCTTTTTTTTTTTTGTTTTTTCTCAGAAAAAGATCTTTAAATGCAGGTTGTTGATGGAAACAAAGGTGGAGTAGTTGTTCTTGTGGAAGGCCTTAAAGGATTTGTTCCTTTCTCTCAAATATCAGCAGTATGTTCACTAAACTGACATTCTTTCTGCTGACTTCTAATTCTCTAGCTGACTTTATTTTTAAACTTTTATTATTTTTACATTGCTGTCATACTGAAAGCCCATACATTTTTACGTTTATGTGATTATATGATTAGATGCTCATGTTTCTGACCATTAAAGACCACAATTTGATTTTTCCTCACAGCTCATGAATTTATCTTGTATTATTATTTCTGTATTCTTTCATTCAGTGCTCGTTACTTTTGCTCATTATATTCTTCATCATTTTTAAGCTCATAAATTTTTGGTTCTTACTCAATTTGCATACTGTGCTATGCATCTCTTTTTCTTGTCGATTTATCAGAAATCAACTGCAGAGGAGCTGCTTAATAAAGAGCTACTTCTGAAGTTTGTGGAGGTTGATGAAAAACTATCTCGGCTAGTCCTAAGTAATTCCAAGGCAATTGCCAGTAGCCAGTCAGAGCTAAGAATTGGGTCAGTAGTTACTGGAATTGTGCAGATTCTGAAACCATATGGAGCCTTTATTGACATCGGTGGAGTTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAGCCGTTCTTCAACCAGGAGATATGCTAAAGGTATTTCATTCAGTGAGAGCTTGTTGGAGGTCTTCGTCATTGTATAGCCTTGAACATGTTGAAATTATTTTTTATGGTTGTAGGTCATGATTTTGAGCTATGACCGCGACCGAGGCCGTATTAGTCTTTCTACCAAGAAACTGGAACCTTCTCCTGGAGACATGCTTCACAATCCAAAGCTTGTTTTTGAGAAGGTATTTCTTTTGCACTTTACTCTTCTTACTATTATGAGATGCATTGCTTTTATTTTCAGAGTGTATTCCTTTTGTACTTCCCAAGTCCAGTCGTCTTTTTCCCTCTCCTTACAGGTTAACCCCTAGCATGACTACAACCTTTATAGCTTGCATTTTCTTGAATCTCTTTTTCCCAAACTTACTGAAATAGAGTAGAAGTTTTTTATCTTTTGTATACAATTTTAGGCGGACGAGATGGCTCAGACATTCAGGCAAAGAATAGCTCAAGCAGAAGCAATGGCTCGTGCAGAGCTTCTCGAATTTCAGCCTGAGGTACTTCTTTCCCTGCCTTGGATTTTTCAACTCAATTCATGAATGGGAATTGAAAACTTTAGAACGTAATTAACTCCTCAATGCCAGAGTAGATAATGGATTGACTCAGCTTCGATGGGGTATTGAGTACACATACCCCTGAGTTGCCTGCAGAGGTTGTAGATATCACTTTTGTTTGTTTCCCCCAAAGAATAACAACGAGGAGTTATTATTCCTTGCTTCTCTCAAGTTAATAATTCCACAGTTAATTTAAAAATTTTGGACTTAATCTTATAAAACGTTCTGCCCTTCCAAAGTTATAGGGTACATAGGTCGACACTTTCTGGGCTTTGACCTTGCCTGACTCACTACAATATTTTTCCAACGGCCAAATACCATGAAAAAAAAATCCAGAAATGAACTAACTAGGTTCGGATGGTCAATCTTATCATTAAGTATCATTTTCCTGATTCACAATCCAATTCAATTCTTCAGTGCTCACTCTCTGGTGCTAGAAGCTTTATTACAAATTAGACCAGCAGATGAATGAAATTCTTTCTTTTCTCATCTCTGATGTGCTAGTTCAACTGGTGAGATTTGTTGTAGGACACATTTCTAGTACTCCTTTAGTACCATACTGCCATTTATCTTTAGCAACATCATTATTTTATGATATGCTATATTATTTCTTAGGTCCATGTTATTTTTGAATGCTGATGATGCGATTAGGATGAGCGATGATTGACCTGCCTTAATTTTGCATCAGTTTACCCACTTGCTGAAACCTCCCTCCATAGCCGAGTGAATGGCTGGATAGCCACTTAACAGTTATGAATAATGAAACATGAAAAAGAGTAAACCTTGTAGTCACGTATTACTAGACTTCCTCTATCCCACTCTCCTCCCTATCTCTCTCGACCCATCCACCGGAGTATGTTGGGCTGGAATGCTTCTATTCCTATCCCATCCTTGGTTTATGATCTCCGGGTCTTCCCGCTAATGAGCATTGATAAAAGTTAATCTTGTAGTCTTACAAAATTTTCCTCTATTAACAGTGTAAAACAATGTTTACATGGACAATTTCGTTTCGATATTAATCCTCCTTTAGTTGCATGATCCTTTCAACTAGGTATAGAAAGCTAGCTCAATTTGAGCATTTCTTTCAACTACAGCCAAGGACACCTTTAATTTTCAATAAGAACTTTTTTAGTTGTTACTTGATTTTCATTTCCATTTATGATCATCATTACTCTTGTCATATACAGTTTGAAACTGGATCATCTTCTATTGTTTTCAGTTTAGTCATAATTTCTTGTTTCTTTGAGGCTTTTTTGCACTTCTGATCTTGAATTAGTAATTGCATGTAGCTTTTGCTGGCAGAATTCATAGATGAAAGAGTGATTCTGGCGATTTATGATGGCCATCCTTCACAATGAGCCCCTCTCAATTACAAGGTATTGACACTTGAACTGGAATAATTGATTGTATTTATTCTCTAACATAGATTTGTGGATACCTTATTTTTAATTTTCTTCTCAATTGCATAATCAAAATAAGTTCTCGTTCGA

mRNA sequence

CAAATTTCTCGCCGGAGCAGAAGATCAGGCGAGGGGATATGAGCTCATTGGCGCATCAACTTTGTGGATTAAGGAGTTCCCCTCTTTCTTCAACGCCGATTTCAACTCGGAAGCGCTTTTCTCCGGTAGTTTCTGCTGCAGCTTCCCCTACTCCCATTTCCAATGCGCAGACCAAAGAGCGCCTTAAGCTCAAGCAACTCTTCAAGGAAGCTTATGAACGTTGCTGTATTACCCCCATGGATGGCGTCTCCTTCACGCTTGAGGACTTCCATGCTTCTCTTGCGAATTACGACTTTGTTTCGGAAATCGGAACCAAGGTGAAAGGTACTGTATTCTCTACCGATGCTAATGGGGCACTAGTTGATACTTCTGCAAAGGGAACTGCATACTTGCCCACCCAAGAAGCATGCATTTTTAATATAAGACATGTAGAAGAGGCAGGCATATATCCTGGGTTAGAAGAGGAGTTTGTAATTATTGGTGGACAGGAACAGGAAGATGAAGGCAGCCTAATTCTGAGTTTGAGAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTTCAAGCTGAGGATTTTGTTATCAAGGGTAAGGTTGTTGATGGAAACAAAGGTGGAGTAGTTGTTCTTGTGGAAGGCCTTAAAGGATTTGTTCCTTTCTCTCAAATATCAGCAAAATCAACTGCAGAGGAGCTGCTTAATAAAGAGCTACTTCTGAAGTTTGTGGAGGTTGATGAAAAACTATCTCGGCTAGTCCTAAGTAATTCCAAGGCAATTGCCAGTAGCCAGTCAGAGCTAAGAATTGGGTCAGTAGTTACTGGAATTGTGCAGATTCTGAAACCATATGGAGCCTTTATTGACATCGGTGGAGTTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAGCCGTTCTTCAACCAGGAGATATGCTAAAGGTCATGATTTTGAGCTATGACCGCGACCGAGGCCGTATTAGTCTTTCTACCAAGAAACTGGAACCTTCTCCTGGAGACATGCTTCACAATCCAAAGCTTGTTTTTGAGAAGGCGGACGAGATGGCTCAGACATTCAGGCAAAGAATAGCTCAAGCAGAAGCAATGGCTCGTGCAGAGCTTCTCGAATTTCAGCCTGAGCTTTTGCTGGCAGAATTCATAGATGAAAGAGTGATTCTGGCGATTTATGATGGCCATCCTTCACAATGAGCCCCTCTCAATTACAAGGTATTGACACTTGAACTGGAATAATTGATTGTATTTATTCTCTAACATAGATTTGTGGATACCTTATTTTTAATTTTCTTCTCAATTGCATAATCAAAATAAGTTCTCGTTCGA

Coding sequence (CDS)

ATGAGCTCATTGGCGCATCAACTTTGTGGATTAAGGAGTTCCCCTCTTTCTTCAACGCCGATTTCAACTCGGAAGCGCTTTTCTCCGGTAGTTTCTGCTGCAGCTTCCCCTACTCCCATTTCCAATGCGCAGACCAAAGAGCGCCTTAAGCTCAAGCAACTCTTCAAGGAAGCTTATGAACGTTGCTGTATTACCCCCATGGATGGCGTCTCCTTCACGCTTGAGGACTTCCATGCTTCTCTTGCGAATTACGACTTTGTTTCGGAAATCGGAACCAAGGTGAAAGGTACTGTATTCTCTACCGATGCTAATGGGGCACTAGTTGATACTTCTGCAAAGGGAACTGCATACTTGCCCACCCAAGAAGCATGCATTTTTAATATAAGACATGTAGAAGAGGCAGGCATATATCCTGGGTTAGAAGAGGAGTTTGTAATTATTGGTGGACAGGAACAGGAAGATGAAGGCAGCCTAATTCTGAGTTTGAGAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTTCAAGCTGAGGATTTTGTTATCAAGGGTAAGGTTGTTGATGGAAACAAAGGTGGAGTAGTTGTTCTTGTGGAAGGCCTTAAAGGATTTGTTCCTTTCTCTCAAATATCAGCAAAATCAACTGCAGAGGAGCTGCTTAATAAAGAGCTACTTCTGAAGTTTGTGGAGGTTGATGAAAAACTATCTCGGCTAGTCCTAAGTAATTCCAAGGCAATTGCCAGTAGCCAGTCAGAGCTAAGAATTGGGTCAGTAGTTACTGGAATTGTGCAGATTCTGAAACCATATGGAGCCTTTATTGACATCGGTGGAGTTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAGCCGTTCTTCAACCAGGAGATATGCTAAAGGTCATGATTTTGAGCTATGACCGCGACCGAGGCCGTATTAGTCTTTCTACCAAGAAACTGGAACCTTCTCCTGGAGACATGCTTCACAATCCAAAGCTTGTTTTTGAGAAGGCGGACGAGATGGCTCAGACATTCAGGCAAAGAATAGCTCAAGCAGAAGCAATGGCTCGTGCAGAGCTTCTCGAATTTCAGCCTGAGCTTTTGCTGGCAGAATTCATAGATGAAAGAGTGATTCTGGCGATTTATGATGGCCATCCTTCACAATGA

Protein sequence

MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQAEAMARAELLEFQPELLLAEFIDERVILAIYDGHPSQ
Homology
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BLAST of CmaCh17G003890 vs. ExPASy Swiss-Prot
Match: P29344 (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 517.3 bits (1331), Expect = 1.5e-145
Identity = 274/383 (71.54%), Postives = 321/383 (83.81%), Query Frame = 0 

Query: 1   MSSLAHQLC-GLRSSPLSSTPIS--------TRKRFSPVVSAAASPTPISNAQTKERLKL 60
           M+SLA QL  GLR  PLS++ +S         + RFSP+VSA A    +SNAQT+ER KL
Sbjct: 1   MASLAQQLAGGLRCPPLSNSNLSKPFSPKHTLKPRFSPIVSAVA----VSNAQTRERQKL 60

Query: 61  KQLFKEAYERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTS 120
           KQLF++AYERC   PM+GVSFT++DFH +L  YDF SE+G++VKGTVF TDANGALVD +
Sbjct: 61  KQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDIT 120

Query: 121 AKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAW 180
           AK +AYLP  EACI+ I++VEEAGI PG+ EEFVIIG  E +D  SLILSLR +QY LAW
Sbjct: 121 AKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADD--SLILSLRQIQYELAW 180

Query: 181 ERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFV 240
           ERCRQLQAED V+KGK+V  NKGGVV LVEGL+GFVPFSQIS+KS+AEELL KE+ LKFV
Sbjct: 181 ERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFV 240

Query: 241 EVDEKLSRLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQ 300
           EVDE+ SRLV+SN KA+A SQ++L IGSVVTG VQ LKPYGAFIDIGG+NGLLHVSQIS 
Sbjct: 241 EVDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 NHISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQ 360
           + +SDIA VLQPGD LKVMILS+DR+RGR+SLSTKKLEP+PGDM+ NPKLVFEKA+EMAQ
Sbjct: 301 DRVSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360

Query: 361 TFRQRIAQAEAMARAELLEFQPE 375
           TFRQRIAQAEAMARA++L FQPE
Sbjct: 361 TFRQRIAQAEAMARADMLRFQPE 377

[Close]
BLAST of CmaCh17G003890 vs. ExPASy Swiss-Prot
Match: Q93VC7 (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 2.7e-142
Identity = 265/382 (69.37%), Postives = 318/382 (83.25%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTR---KRFSPVVSAAASPT-----PISNAQTKERLKLK 60
           M+SLA Q  GLR SPLSS+   +R   K F    SA+ SPT      +S+ QTKERL+LK
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNKSASVSPTIVAAVAMSSGQTKERLELK 60

Query: 61  QLFKEAYERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSA 120
           ++F++AYERC  +PM+GV+FT++DF A++  YDF SEIGT+VKGTVF TDANGALVD SA
Sbjct: 61  KMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDISA 120

Query: 121 KGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWE 180
           K +AYL  ++ACI  I+HVEEAGI PG+ EEFVIIG  E E + SL+LSLR++QY LAWE
Sbjct: 121 KSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIG--ENESDDSLLLSLRNIQYELAWE 180

Query: 181 RCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVE 240
           RCRQLQAED ++K KV+  NKGG+V LVEGL+GFVPFSQIS+K+ AEELL KE+ LKFVE
Sbjct: 181 RCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVE 240

Query: 241 VDEKLSRLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQN 300
           VDE+ ++LVLSN KA+A SQ++L IGSVV G+VQ LKPYGAFIDIGG+NGLLHVSQIS +
Sbjct: 241 VDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHD 300

Query: 301 HISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQT 360
            +SDIA VLQPGD LKVMILS+DRDRGR+SLSTKKLEP+PGDM+ NPKLVFEKA+EMAQT
Sbjct: 301 RVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 360

Query: 361 FRQRIAQAEAMARAELLEFQPE 375
           FRQRIAQAEAMARA++L FQPE
Sbjct: 361 FRQRIAQAEAMARADMLRFQPE 380

[Close]
BLAST of CmaCh17G003890 vs. ExPASy Swiss-Prot
Match: P46228 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpsA PE=1 SV=4)

HSP 1 Score: 269.6 bits (688), Expect = 5.5e-71
Identity = 145/304 (47.70%), Postives = 201/304 (66.12%), Query Frame = 0 

Query: 66  PMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPTQEACI 125
           P   + FT EDF A L  YD+    G  V GTVF+ +  GAL+D  AK  A+LP QE  I
Sbjct: 7   PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSI 66

Query: 126 FNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAEDFVIK 185
             +   EE  + P    EF I+   ++ ++G L LS+R ++Y  AWER RQLQ ED  ++
Sbjct: 67  NRVESPEEV-LQPSEMREFFIL--SDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVR 126

Query: 186 GKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRLVLSNS 245
            +V   N+GG +V +EGL+GF+P S IS +   E+L+ +EL LKF+EVDE  +RLVLS+ 
Sbjct: 127 SEVFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHR 186

Query: 246 KAIAS-SQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAVLQPG 305
           +A+     + L +G VV G V+ +KPYGAFIDIGGV+GLLH+S+IS +HI    +V    
Sbjct: 187 RALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVN 246

Query: 306 DMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRI-AQAEAM 365
           D +KVMI+  D +RGRISLSTK+LEP PGDM+ NP++V+EKA+EMA  +R+++  QAE +
Sbjct: 247 DEVKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKLKQQAEGL 306

Query: 366 ARAE 368
              E
Sbjct: 307 VVTE 307

[Close]
BLAST of CmaCh17G003890 vs. ExPASy Swiss-Prot
Match: P73530 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rps1A PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.0e-69
Identity = 148/315 (46.98%), Postives = 205/315 (65.08%), Query Frame = 0 

Query: 70  VSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPTQEACIFNIR 129
           + FTLEDF A L  YD+    G  V GTVFS ++ GAL+D  AK  AY+P QE  I  + 
Sbjct: 10  IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69

Query: 130 HVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAEDFVIKGKVV 189
             EE  + P    EF I+   ++ ++G L LS+R ++Y  AWER RQLQAED  ++  V 
Sbjct: 70  DPEEV-LQPNETREFFIL--TDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVF 129

Query: 190 DGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRLVLSNSKAIA 249
             N+GG +V +EGL+GF+P S ISA+   E+L+ ++L LKF+EVDE+ +RLVLS+ +A+ 
Sbjct: 130 ATNRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALV 189

Query: 250 S-SQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAVLQPGDMLK 309
               + L +  VV G V+ +KPYGAFIDIGGV+GLLH+S+IS +HI    +V    D +K
Sbjct: 190 ERKMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIK 249

Query: 310 VMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQAEAMARAEL 369
           VMI+  D +RGRISLSTK+LEP PG ML +  LV E ADEMA+ FRQ+      +A A+ 
Sbjct: 250 VMIIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQK-----RLAEAQG 309

Query: 370 LEFQPELLLAEFIDE 384
           + ++P   + +  DE
Sbjct: 310 IPYEPPTSVDDTDDE 316

[Close]
BLAST of CmaCh17G003890 vs. ExPASy Swiss-Prot
Match: O33698 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rpsA PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.2e-42
Identity = 98/284 (34.51%), Postives = 165/284 (58.10%), Query Frame = 0 

Query: 75  EDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPTQEACIFNIRHVEEA 134
           +DF  +L      S+ G  V+G V     +GA +D   K  A+LP +EA +  +  + EA
Sbjct: 12  DDFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDL-EA 71

Query: 135 GIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAEDFVIKGKVVDGNKG 194
            +    E EF++I  ++Q ++G + +SLR++    AW R  +LQ     ++ KV   NKG
Sbjct: 72  HLPKDEELEFLVI--RDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKG 131

Query: 195 GVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRLVLSNSKAIASS-QS 254
           GV   +EGL+ F+P S ++ K   + L  K L + F+EV+    +LVLS  +A  ++   
Sbjct: 132 GVTADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQAARTALVR 191

Query: 255 ELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAVLQPGDMLKVMILS 314
           E+ +G ++ G V  LKP+G F+D+GG   LL ++QISQ  ++D+ A+ + GD ++ ++++
Sbjct: 192 EIEVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVA 251

Query: 315 YDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRI 358
            D  +GRISLSTK LE  PG++L N   +   A + A+  R+++
Sbjct: 252 IDNTKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQL 292

[Close]
BLAST of CmaCh17G003890 vs. ExPASy TrEMBL
Match: A0A6J1L0J3 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499271 PE=4 SV=1)

HSP 1 Score: 759.6 bits (1960), Expect = 6.5e-216
Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60
           MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE
Sbjct: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60

Query: 61  RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120
           RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT
Sbjct: 61  RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120

Query: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE 180
           QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE
Sbjct: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE 180

Query: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240
           DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL
Sbjct: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240

Query: 241 VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300
           VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV
Sbjct: 241 VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300

Query: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360
           LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA
Sbjct: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360

Query: 361 EAMARAELLEFQPELLLAEFIDERVILAIYDGHPSQ 397
           EAMARAELLEFQPELLLAEFIDERVILAIYDGHPSQ
Sbjct: 361 EAMARAELLEFQPELLLAEFIDERVILAIYDGHPSQ 396

[Close]
BLAST of CmaCh17G003890 vs. ExPASy TrEMBL
Match: A0A6J1H453 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459974 PE=4 SV=1)

HSP 1 Score: 746.9 bits (1927), Expect = 4.4e-212
Identity = 387/396 (97.73%), Postives = 392/396 (98.99%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60
           MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE
Sbjct: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60

Query: 61  RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120
           RCCITPMDGVSFTLEDFHA+LANYDFVSE+GTKVKGTVFSTDANGALVDTSAKGTAYLPT
Sbjct: 61  RCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120

Query: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE 180
           QEACIFNIRHVEEAGIYPGLEEEFVIIG QEQED+GSLILSLRSVQYGLAWERCRQLQAE
Sbjct: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAE 180

Query: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240
           DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKL RL
Sbjct: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRL 240

Query: 241 VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300
           +LSNSKAI SSQSELRIGSVVTGIVQILKPYGAF+DIGGVNGLLHVSQISQNHI DIAAV
Sbjct: 241 ILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAV 300

Query: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360
           LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA
Sbjct: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360

Query: 361 EAMARAELLEFQPELLLAEFIDERVILAIYDGHPSQ 397
           EAMARAELLEFQPELLLAEFIDERVILAIYDGHPSQ
Sbjct: 361 EAMARAELLEFQPELLLAEFIDERVILAIYDGHPSQ 396

[Close]
BLAST of CmaCh17G003890 vs. ExPASy TrEMBL
Match: A0A6J1KY62 (30S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499271 PE=4 SV=1)

HSP 1 Score: 716.5 bits (1848), Expect = 6.3e-203
Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60
           MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE
Sbjct: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60

Query: 61  RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120
           RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT
Sbjct: 61  RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120

Query: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE 180
           QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE
Sbjct: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE 180

Query: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240
           DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL
Sbjct: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240

Query: 241 VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300
           VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV
Sbjct: 241 VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300

Query: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360
           LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA
Sbjct: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360

Query: 361 EAMARAELLEFQPE 375
           EAMARAELLEFQPE
Sbjct: 361 EAMARAELLEFQPE 374

[Close]
BLAST of CmaCh17G003890 vs. ExPASy TrEMBL
Match: A0A6J1H681 (30S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459974 PE=4 SV=1)

HSP 1 Score: 703.7 bits (1815), Expect = 4.2e-199
Identity = 365/374 (97.59%), Postives = 370/374 (98.93%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60
           MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE
Sbjct: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60

Query: 61  RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120
           RCCITPMDGVSFTLEDFHA+LANYDFVSE+GTKVKGTVFSTDANGALVDTSAKGTAYLPT
Sbjct: 61  RCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120

Query: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE 180
           QEACIFNIRHVEEAGIYPGLEEEFVIIG QEQED+GSLILSLRSVQYGLAWERCRQLQAE
Sbjct: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAE 180

Query: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240
           DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKL RL
Sbjct: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRL 240

Query: 241 VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300
           +LSNSKAI SSQSELRIGSVVTGIVQILKPYGAF+DIGGVNGLLHVSQISQNHI DIAAV
Sbjct: 241 ILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAV 300

Query: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360
           LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA
Sbjct: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360

Query: 361 EAMARAELLEFQPE 375
           EAMARAELLEFQPE
Sbjct: 361 EAMARAELLEFQPE 374

[Close]
BLAST of CmaCh17G003890 vs. ExPASy TrEMBL
Match: A0A6J1CCC9 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009918 PE=4 SV=1)

HSP 1 Score: 577.0 bits (1486), Expect = 6.0e-161
Identity = 309/390 (79.23%), Postives = 337/390 (86.41%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTR----KRFS------------PVVSAAASPTPISNAQ 60
           M+SLAH++      PLSS  +S      +RFS            PVVS+AAS TPISNAQ
Sbjct: 1   MNSLAHRV------PLSSLRLSVSSSSWRRFSRKESHNHKFRALPVVSSAASTTPISNAQ 60

Query: 61  TKERLKLKQLFKEAYERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDAN 120
           TKERLKLKQLFKEAYERCC TPMDGVSFTLEDFHA+L+NYDFVSE+GTKVKGTVFSTDA+
Sbjct: 61  TKERLKLKQLFKEAYERCCTTPMDGVSFTLEDFHAALSNYDFVSELGTKVKGTVFSTDAS 120

Query: 121 GALVDTSAKGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRS 180
           GALVDT+AKGTAYLP +EACI  IRHVEEAGIYPGLEEEFVII   E E +GSLILSLR 
Sbjct: 121 GALVDTTAKGTAYLPIEEACILKIRHVEEAGIYPGLEEEFVIIA--EHETDGSLILSLRR 180

Query: 181 VQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNK 240
           +QYGLAWERCRQLQAED VIKGKVV  NKGGV VLVEGL+GFVPFSQISAKSTAEELL+K
Sbjct: 181 LQYGLAWERCRQLQAEDVVIKGKVVGANKGGVFVLVEGLRGFVPFSQISAKSTAEELLDK 240

Query: 241 ELLLKFVEVDEKLSRLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLL 300
           EL LKFVEVDE+LSRL+LSN KAIA+SQ+ELRIGSVVTG VQILK YGAFIDIGGVNGLL
Sbjct: 241 ELRLKFVEVDEELSRLILSNCKAIANSQAELRIGSVVTGTVQILKSYGAFIDIGGVNGLL 300

Query: 301 HVSQISQNHISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFE 360
           H+SQIS NHISD+A VL+PGD LKVMILSYD +RGR+SLSTK LEP+PGDM+HNPKLVFE
Sbjct: 301 HISQISHNHISDMATVLRPGDTLKVMILSYDHERGRVSLSTKNLEPTPGDMIHNPKLVFE 360

Query: 361 KADEMAQTFRQRIAQAEAMARAELLEFQPE 375
           KADEMAQTFRQRIAQAEAMAR +LL  QPE
Sbjct: 361 KADEMAQTFRQRIAQAEAMARVDLLRLQPE 382

[Close]
BLAST of CmaCh17G003890 vs. NCBI nr
Match: XP_023006590.1 (30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 759.6 bits (1960), Expect = 1.3e-215
Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60
           MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE
Sbjct: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60

Query: 61  RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120
           RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT
Sbjct: 61  RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120

Query: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE 180
           QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE
Sbjct: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE 180

Query: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240
           DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL
Sbjct: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240

Query: 241 VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300
           VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV
Sbjct: 241 VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300

Query: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360
           LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA
Sbjct: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360

Query: 361 EAMARAELLEFQPELLLAEFIDERVILAIYDGHPSQ 397
           EAMARAELLEFQPELLLAEFIDERVILAIYDGHPSQ
Sbjct: 361 EAMARAELLEFQPELLLAEFIDERVILAIYDGHPSQ 396

[Close]
BLAST of CmaCh17G003890 vs. NCBI nr
Match: XP_022958818.1 (30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 746.9 bits (1927), Expect = 9.0e-212
Identity = 387/396 (97.73%), Postives = 392/396 (98.99%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60
           MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE
Sbjct: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60

Query: 61  RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120
           RCCITPMDGVSFTLEDFHA+LANYDFVSE+GTKVKGTVFSTDANGALVDTSAKGTAYLPT
Sbjct: 61  RCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120

Query: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE 180
           QEACIFNIRHVEEAGIYPGLEEEFVIIG QEQED+GSLILSLRSVQYGLAWERCRQLQAE
Sbjct: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAE 180

Query: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240
           DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKL RL
Sbjct: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRL 240

Query: 241 VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300
           +LSNSKAI SSQSELRIGSVVTGIVQILKPYGAF+DIGGVNGLLHVSQISQNHI DIAAV
Sbjct: 241 ILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAV 300

Query: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360
           LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA
Sbjct: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360

Query: 361 EAMARAELLEFQPELLLAEFIDERVILAIYDGHPSQ 397
           EAMARAELLEFQPELLLAEFIDERVILAIYDGHPSQ
Sbjct: 361 EAMARAELLEFQPELLLAEFIDERVILAIYDGHPSQ 396

[Close]
BLAST of CmaCh17G003890 vs. NCBI nr
Match: XP_023006591.1 (30S ribosomal protein S1, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 716.5 bits (1848), Expect = 1.3e-202
Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60
           MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE
Sbjct: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60

Query: 61  RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120
           RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT
Sbjct: 61  RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120

Query: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE 180
           QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE
Sbjct: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE 180

Query: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240
           DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL
Sbjct: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240

Query: 241 VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300
           VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV
Sbjct: 241 VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300

Query: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360
           LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA
Sbjct: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360

Query: 361 EAMARAELLEFQPE 375
           EAMARAELLEFQPE
Sbjct: 361 EAMARAELLEFQPE 374

[Close]
BLAST of CmaCh17G003890 vs. NCBI nr
Match: XP_023547911.1 (30S ribosomal protein S1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 704.1 bits (1816), Expect = 6.7e-199
Identity = 366/374 (97.86%), Postives = 371/374 (99.20%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60
           MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE
Sbjct: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60

Query: 61  RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120
           RCCITPMDGVSFTLEDFH +LANYDFVSE+GTKVKGTVFSTDANGALVDTSAKGTAYLPT
Sbjct: 61  RCCITPMDGVSFTLEDFHDALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120

Query: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE 180
           QEACIFNIRHVEEAGIYPGLEEEFVIIG QEQED+GSLILSLRSVQYGLAWERCRQLQAE
Sbjct: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAE 180

Query: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240
           DFVIKG VVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL
Sbjct: 181 DFVIKGMVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240

Query: 241 VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300
           +LSNSKAIASSQSEL+IGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV
Sbjct: 241 ILSNSKAIASSQSELKIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300

Query: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360
           LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA
Sbjct: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360

Query: 361 EAMARAELLEFQPE 375
           EAMARAELLEFQPE
Sbjct: 361 EAMARAELLEFQPE 374

[Close]
BLAST of CmaCh17G003890 vs. NCBI nr
Match: XP_022958819.1 (30S ribosomal protein S1, chloroplastic-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 703.7 bits (1815), Expect = 8.7e-199
Identity = 365/374 (97.59%), Postives = 370/374 (98.93%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60
           MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE
Sbjct: 1   MSSLAHQLCGLRSSPLSSTPISTRKRFSPVVSAAASPTPISNAQTKERLKLKQLFKEAYE 60

Query: 61  RCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120
           RCCITPMDGVSFTLEDFHA+LANYDFVSE+GTKVKGTVFSTDANGALVDTSAKGTAYLPT
Sbjct: 61  RCCITPMDGVSFTLEDFHAALANYDFVSELGTKVKGTVFSTDANGALVDTSAKGTAYLPT 120

Query: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWERCRQLQAE 180
           QEACIFNIRHVEEAGIYPGLEEEFVIIG QEQED+GSLILSLRSVQYGLAWERCRQLQAE
Sbjct: 121 QEACIFNIRHVEEAGIYPGLEEEFVIIGEQEQEDDGSLILSLRSVQYGLAWERCRQLQAE 180

Query: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLSRL 240
           DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKL RL
Sbjct: 181 DFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVEVDEKLYRL 240

Query: 241 VLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQNHISDIAAV 300
           +LSNSKAI SSQSELRIGSVVTGIVQILKPYGAF+DIGGVNGLLHVSQISQNHI DIAAV
Sbjct: 241 ILSNSKAIVSSQSELRIGSVVTGIVQILKPYGAFVDIGGVNGLLHVSQISQNHIPDIAAV 300

Query: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360
           LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA
Sbjct: 301 LQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQTFRQRIAQA 360

Query: 361 EAMARAELLEFQPE 375
           EAMARAELLEFQPE
Sbjct: 361 EAMARAELLEFQPE 374

[Close]
BLAST of CmaCh17G003890 vs. TAIR 10
Match: AT5G30510.1 (ribosomal protein S1 )

HSP 1 Score: 506.5 bits (1303), Expect = 1.9e-143
Identity = 265/382 (69.37%), Postives = 318/382 (83.25%), Query Frame = 0 

Query: 1   MSSLAHQLCGLRSSPLSSTPISTR---KRFSPVVSAAASPT-----PISNAQTKERLKLK 60
           M+SLA Q  GLR SPLSS+   +R   K F    SA+ SPT      +S+ QTKERL+LK
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNKSASVSPTIVAAVAMSSGQTKERLELK 60

Query: 61  QLFKEAYERCCITPMDGVSFTLEDFHASLANYDFVSEIGTKVKGTVFSTDANGALVDTSA 120
           ++F++AYERC  +PM+GV+FT++DF A++  YDF SEIGT+VKGTVF TDANGALVD SA
Sbjct: 61  KMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDISA 120

Query: 121 KGTAYLPTQEACIFNIRHVEEAGIYPGLEEEFVIIGGQEQEDEGSLILSLRSVQYGLAWE 180
           K +AYL  ++ACI  I+HVEEAGI PG+ EEFVIIG  E E + SL+LSLR++QY LAWE
Sbjct: 121 KSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIG--ENESDDSLLLSLRNIQYELAWE 180

Query: 181 RCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEELLNKELLLKFVE 240
           RCRQLQAED ++K KV+  NKGG+V LVEGL+GFVPFSQIS+K+ AEELL KE+ LKFVE
Sbjct: 181 RCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVE 240

Query: 241 VDEKLSRLVLSNSKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGGVNGLLHVSQISQN 300
           VDE+ ++LVLSN KA+A SQ++L IGSVV G+VQ LKPYGAFIDIGG+NGLLHVSQIS +
Sbjct: 241 VDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHD 300

Query: 301 HISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSPGDMLHNPKLVFEKADEMAQT 360
            +SDIA VLQPGD LKVMILS+DRDRGR+SLSTKKLEP+PGDM+ NPKLVFEKA+EMAQT
Sbjct: 301 RVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQT 360

Query: 361 FRQRIAQAEAMARAELLEFQPE 375
           FRQRIAQAEAMARA++L FQPE
Sbjct: 361 FRQRIAQAEAMARADMLRFQPE 380

[Close]
BLAST of CmaCh17G003890 vs. TAIR 10
Match: AT1G71720.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 100.9 bits (250), Expect = 2.4e-21
Identity = 64/208 (30.77%), Postives = 120/208 (57.69%), Query Frame = 0 

Query: 156 GSLILSLRSVQYGLAWERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAK 215
           G  +LS R     +AW R RQ++  +  I+ K+ + N GG++  +EGL+ F+P  ++  K
Sbjct: 258 GRPLLSSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKK 317

Query: 216 ----STAEELLNKELLLKFVEVDEKLSRLVLSNSKAIASSQSELRIGSVVTGIVQILKPY 275
               +  +E + +  L++   ++E  + L+L  S+ +A  +  LR G+++ G V  + PY
Sbjct: 318 VNTFTELKENVGRRFLVQITRLNEDKNDLIL--SEKVAWEKLYLREGTLLEGTVVKILPY 377

Query: 276 GAFIDIG--GVNGLLHVSQISQNHISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLE 335
           GA + +G    +GLLH+S I++  I  ++ VLQ  + +KV+++       +ISLS   LE
Sbjct: 378 GAQVKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVK-SLFPDKISLSIADLE 437

Query: 336 PSPGDMLHNPKLVFEKADEMAQTFRQRI 358
             PG  + + + VF +A+EMA+ +R+++
Sbjct: 438 SEPGLFISDREKVFTEAEEMAKKYREKM 462

[Close]
BLAST of CmaCh17G003890 vs. TAIR 10
Match: AT3G23700.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-18
Identity = 54/180 (30.00%), Postives = 99/180 (55.00%), Query Frame = 0 

Query: 171 WERCRQLQAEDFVIKGKVVDGNKGGVVVLVEGLKGFVPFSQISAKSTAEE---------- 230
           W+  +         +G+V   N GG+++    L GF+P+ Q+S   + +E          
Sbjct: 97  WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAK 156

Query: 231 -LLNKELLLKFVEVDEKLSRLVLSNSKAIASSQSE-LRIGSVVTGIVQILKPYGAFIDIG 290
            L+  +L +K V+ DE+  +L+LS   A+    S+ + +G V  G V  ++ YGAFI + 
Sbjct: 157 TLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLR 216

Query: 291 ------GVNGLLHVSQISQNHISDIAAVLQPGDMLKVMILSYDRDRGRISLSTKKLEPSP 333
                  + GL+HVS++S +++ D+  VL+ GD ++V++ + D+++ RI+LS K+LE  P
Sbjct: 217 FDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDP 276

[Close]
BLAST of CmaCh17G003890 vs. TAIR 10
Match: AT4G29060.1 (elongation factor Ts family protein )

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-10
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 0 

Query: 245 SKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGG-VNGLLHVSQISQNHISDIAAVLQP 304
           S+  A    EL  G+  TG V+ ++P+GAF+D G   +GL+HVSQ+S N + D+++V+  
Sbjct: 123 SEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTI 182

Query: 305 GDMLKVMILSYDRDRGRISLSTKKLEPSP 333
           G  +KV ++  D +  RISL+ ++ +  P
Sbjct: 183 GQEVKVRLVEADIESKRISLTMRENDDPP 211

[Close]
BLAST of CmaCh17G003890 vs. TAIR 10
Match: AT4G29060.2 (elongation factor Ts family protein )

HSP 1 Score: 63.9 bits (154), Expect = 3.3e-10
Identity = 33/89 (37.08%), Postives = 56/89 (62.92%), Query Frame = 0 

Query: 245 SKAIASSQSELRIGSVVTGIVQILKPYGAFIDIGG-VNGLLHVSQISQNHISDIAAVLQP 304
           S+  A    EL  G+  TG V+ ++P+GAF+D G   +GL+HVSQ+S N + D+++V+  
Sbjct: 123 SEMPAVKNEELVPGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTI 182

Query: 305 GDMLKVMILSYDRDRGRISLSTKKLEPSP 333
           G  +KV ++  D +  RISL+ ++ +  P
Sbjct: 183 GQEVKVRLVEADIESKRISLTMRENDDPP 211

The following BLAST results are available for this feature:
BLAST of CmaCh17G003890 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P293441.5e-14571.5430S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=... [more]
Q93VC72.7e-14269.3730S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 ... [more]
P462285.5e-7147.7030S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA... [more]
P735303.0e-6946.9830S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus... [more]
O336989.2e-4234.5130S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805... [more]
BLAST of CmaCh17G003890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1L0J36.5e-216100.0030S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3... [more]
A0A6J1H4534.4e-21297.7330S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX... [more]
A0A6J1KY626.3e-203100.0030S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita maxima OX=3... [more]
A0A6J1H6814.2e-19997.5930S ribosomal protein S1, chloroplastic-like isoform X2 OS=Cucurbita moschata OX... [more]
A0A6J1CCC96.0e-16179.2330S ribosomal protein S1, chloroplastic-like isoform X1 OS=Momordica charantia O... [more]
BLAST of CmaCh17G003890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023006590.11.3e-215100.0030S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita maxima][more]
XP_022958818.19.0e-21297.7330S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita moschata][more]
XP_023006591.11.3e-202100.0030S ribosomal protein S1, chloroplastic-like isoform X2 [Cucurbita maxima][more]
XP_023547911.16.7e-19997.8630S ribosomal protein S1, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022958819.18.7e-19997.5930S ribosomal protein S1, chloroplastic-like isoform X2 [Cucurbita moschata][more]
BLAST of CmaCh17G003890 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G30510.11.9e-14369.37ribosomal protein S1 [more]
AT1G71720.12.4e-2130.77Nucleic acid-binding proteins superfamily [more]
AT3G23700.12.5e-1830.00Nucleic acid-binding proteins superfamily [more]
AT4G29060.13.3e-1037.08elongation factor Ts family protein [more]
AT4G29060.23.3e-1037.08elongation factor Ts family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 343..363
NoneNo IPR availableGENE3D2.40.50.140coord: 251..331
e-value: 9.2E-22
score: 78.8
NoneNo IPR availableGENE3D2.40.50.140coord: 74..175
e-value: 1.1E-6
score: 30.3
coord: 176..250
e-value: 9.5E-6
score: 27.3
NoneNo IPR availablePANTHERPTHR10724:SF1130S RIBOSOMAL PROTEIN S1, CHLOROPLASTICcoord: 1..377
NoneNo IPR availablePANTHERPTHR1072430S RIBOSOMAL PROTEIN S1coord: 1..377
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 89..163
e-value: 0.0084
score: 25.3
coord: 179..245
e-value: 1.9E-4
score: 30.8
coord: 256..326
e-value: 1.4E-23
score: 94.3
IPR003029S1 domainPFAMPF00575S1coord: 255..326
e-value: 4.5E-18
score: 65.4
coord: 180..243
e-value: 1.2E-7
score: 31.9
IPR003029S1 domainPROSITEPS50126S1coord: 258..326
score: 21.213564
IPR003029S1 domainPROSITEPS50126S1coord: 181..245
score: 12.686594
IPR003029S1 domainPROSITEPS50126S1coord: 91..163
score: 10.616724
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 89..189
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 251..332
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 177..247

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G003890.1CmaCh17G003890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding