CmaCh17G003650 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G003650
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	zinc finger CCHC domain-containing protein 10
Location	Cma_Chr17: 2028385 .. 2029191 (+)
RNA-Seq Expression	CmaCh17G003650
Synteny	CmaCh17G003650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGTAAGAAGGAAGAGAAGTCGCAAGCAGCTGCTGAAAGGATTAAGGCTGCGGCTCTCAGTGCTGCAAAAGGCCTTAGTCGAGCTCAGGCTGAACGAGCAGCTACGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAAAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGAGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAGGCAGTAAGATTGGGTGAAAGAAAGGACATTAAGGTCTCCATGTCTAGTGCGGGCGGAGCTGCTGCACAGTGCCAGAAATGTTATCAGTCGGGACACTGGACATATGAATGCAAAAATGAACGAGTTTACATATCCCGACCATCTCGGACTCAACAACTCAAAAACCCGAAGTTGAGGATGAAGATGGCAGTCTCATTGGAGATGGACAACCCAGATTCTGGTGACGAGGAGAAGAAGACCAAGAAGAGGCAATTGAAAAAGAAAAGTAAAAGAAAGCATCGGTCCGAACTAAAATCCAATAGTGATAGCGAGGCTTCTGTATTTGAAACTGATAGTGGGTCATCATCAGTTACTGGATCTGATGATTCTTCTGAAGAAAGCAGTTCAGATTACAGTTCTTCATCTGATTCGGAGTCAGAAAGGAGTCGAAGAAGGAGAAGGAGAAAGAAGCAGAAGAGGGGGAGGAGGAAGAGGAGGTACAGCTCATCTTCAGATTCTTCTGATTCAGACTCGGAGTCTGAATCAGAGTCTGATTCTGATCATGAACGTAGTAGGAGGAAGAGTCGAAGGCACAGCAGAAAACGCTAG

mRNA sequence

ATGTCTAGTAAGAAGGAAGAGAAGTCGCAAGCAGCTGCTGAAAGGATTAAGGCTGCGGCTCTCAGTGCTGCAAAAGGCCTTAGTCGAGCTCAGGCTGAACGAGCAGCTACGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAAAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGAGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAGGCAGTAAGATTGGGTGAAAGAAAGGACATTAAGGTCTCCATGTCTAGTGCGGGCGGAGCTGCTGCACAGTGCCAGAAATGTTATCAGTCGGGACACTGGACATATGAATGCAAAAATGAACGAGTTTACATATCCCGACCATCTCGGACTCAACAACTCAAAAACCCGAAGTTGAGGATGAAGATGGCAGTCTCATTGGAGATGGACAACCCAGATTCTGGTGACGAGGAGAAGAAGACCAAGAAGAGGCAATTGAAAAAGAAAAGTAAAAGAAAGCATCGGTCCGAACTAAAATCCAATAGTGATAGCGAGGCTTCTGTATTTGAAACTGATAGTGGGTCATCATCAGTTACTGGATCTGATGATTCTTCTGAAGAAAGCAGTTCAGATTACAGTTCTTCATCTGATTCGGAGTCAGAAAGGAGTCGAAGAAGGAGAAGGAGAAAGAAGCAGAAGAGGGGGAGGAGGAAGAGGAGGTACAGCTCATCTTCAGATTCTTCTGATTCAGACTCGGAGTCTGAATCAGAGTCTGATTCTGATCATGAACGTAGTAGGAGGAAGAGTCGAAGGCACAGCAGAAAACGCTAG

Coding sequence (CDS)

ATGTCTAGTAAGAAGGAAGAGAAGTCGCAAGCAGCTGCTGAAAGGATTAAGGCTGCGGCTCTCAGTGCTGCAAAAGGCCTTAGTCGAGCTCAGGCTGAACGAGCAGCTACGGCTGCTGCTCGAAATGTTAATGCTTATGGGCAAAAGGAAGAAGGGCCTAGCAGATGGCAGGAGAAAAGAGAAGCAAAGAGGCAGATGTATTTGATGAGTACTGAAAAGGCAGTAAGATTGGGTGAAAGAAAGGACATTAAGGTCTCCATGTCTAGTGCGGGCGGAGCTGCTGCACAGTGCCAGAAATGTTATCAGTCGGGACACTGGACATATGAATGCAAAAATGAACGAGTTTACATATCCCGACCATCTCGGACTCAACAACTCAAAAACCCGAAGTTGAGGATGAAGATGGCAGTCTCATTGGAGATGGACAACCCAGATTCTGGTGACGAGGAGAAGAAGACCAAGAAGAGGCAATTGAAAAAGAAAAGTAAAAGAAAGCATCGGTCCGAACTAAAATCCAATAGTGATAGCGAGGCTTCTGTATTTGAAACTGATAGTGGGTCATCATCAGTTACTGGATCTGATGATTCTTCTGAAGAAAGCAGTTCAGATTACAGTTCTTCATCTGATTCGGAGTCAGAAAGGAGTCGAAGAAGGAGAAGGAGAAAGAAGCAGAAGAGGGGGAGGAGGAAGAGGAGGTACAGCTCATCTTCAGATTCTTCTGATTCAGACTCGGAGTCTGAATCAGAGTCTGATTCTGATCATGAACGTAGTAGGAGGAAGAGTCGAAGGCACAGCAGAAAACGCTAG

Protein sequence

MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKREAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRPSRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASVFETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSSDSDSESESESDSDHERSRRKSRRHSRKR

Homology

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BLAST of CmaCh17G003650 vs. ExPASy Swiss-Prot
Match: Q5EB97 (Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus OX=10116 GN=Zcchc10 PE=2 SV=2)

HSP 1 Score: 53.1 bits (126), Expect = 5.5e-06
Identity = 66/173 (38.15%), Postives = 80/173 (46.24%), Query Frame = 0


Query: 96  QCQKCYQSGHWTYECKNERVYISRPSRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKK 155
           +CQKC + GHWTYECK +R Y+ RPSRT +LK   L+ K    L+    ++  E K  KK
Sbjct: 22  RCQKCLEFGHWTYECKGKRKYLHRPSRTAELKK-ALKEKENRLLQQSMGETNTERKTKKK 81

Query: 156 RQLKKKSKRKHRSELKSNSDSEASVFETDSGSSSVTGSDDSSEESSSDYSSSSDSESERS 215
           R+ K  +         S S SE+    + S   S      SS  SSS YSSSS S S   
Sbjct: 82  RRPKSVTSTSSSDSSASESSSESETSASSSSEDSDADGSLSSSSSSSAYSSSSSSSS--- 141

Query: 216 RRRRRRKKQKRGRRKRRYSSSSDSSDSDSESESESDSDHERSRRKSRRHSRKR 269
                             SSSS SSDSDS S S S S  E S        RK+
Sbjct: 142 ------------------SSSSSSSDSDSSSSSSSSSSSESSSDDEPPKKRKK 172

[Close]

BLAST of CmaCh17G003650 vs. ExPASy Swiss-Prot
Match: Q8TBK6 (Zinc finger CCHC domain-containing protein 10 OS=Homo sapiens OX=9606 GN=ZCCHC10 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-05
Identity = 66/185 (35.68%), Postives = 89/185 (48.11%), Query Frame = 0


Query: 85  VSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRPSRTQQLKNPKLRMKMAVSLEMDNP 144
           + +S A     +CQKC + GHWTYEC  +R Y+ RPSRT +LK      +  + L+    
Sbjct: 33  IVISEANKQHVRCQKCLEFGHWTYECTGKRKYLHRPSRTAELKKALKEKENRLLLQQSIG 92

Query: 145 DSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASVFETDSGSSSVTGSDDSSEESSSDY 204
           ++  E      R+ KKK  +   S   S+SDS AS     S  S  T +  SSE+S +D 
Sbjct: 93  ETNVE------RKAKKKRSKSVTSSSSSSSDSSAS---DSSSESEETSTSSSSEDSDTDE 152

Query: 205 SSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSSDSDSESES------ESDSDHERSR 264
           SSSS S S  S                  SSSS  SDSDS S S      +S SD E  +
Sbjct: 153 SSSSSSSSASSTT----------------SSSSSDSDSDSSSSSSSSTSTDSSSDDEPPK 192

[Close]

BLAST of CmaCh17G003650 vs. ExPASy Swiss-Prot
Match: Q9CX48 (Zinc finger CCHC domain-containing protein 10 OS=Mus musculus OX=10090 GN=Zcchc10 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 6.1e-05
Identity = 66/167 (39.52%), Postives = 86/167 (51.50%), Query Frame = 0


Query: 96  QCQKCYQSGHWTYECKNERVYISRPSRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKK 155
           +CQKC + GHWTYECK +R Y+ RPSRT +LK  K   +    L + +    + EKK K 
Sbjct: 22  RCQKCLEFGHWTYECKGKRKYLHRPSRTAELK--KALKEKENRLLLQSIGETNIEKKIK- 81

Query: 156 RQLKKKSKRKHRSELKSNSDSEASVFETDSGSSSVTGSDDSSEESSSDYSSSSDSESERS 215
              KKK  +   S   S+SDS AS    +S S S T +  SSE+S SD S SS S S  S
Sbjct: 82  ---KKKRSKSVTSSSTSSSDSSAS----ESSSESETSASSSSEDSDSDESLSSSSSSSSS 141

Query: 216 RRRRRRKKQKRGRRKRRYSSSSDSSDSDSESESESDSDHERSRRKSR 263
                              SSS SS S S SES SD + ++ ++K +
Sbjct: 142 SACSSSSSSSSSSSSSDSDSSSSSSSSSSSSESSSDDEPQKKKKKKK 178

[Close]

BLAST of CmaCh17G003650 vs. ExPASy TrEMBL
Match: A0A6J1L1Z2 (zinc finger CCHC domain-containing protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111499120 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 7.0e-121
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASV 180
           SRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASV 180

Query: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240
           FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSESESESDSDHERSRRKSRRHSRKR 269
           DSDSESESESDSDHERSRRKSRRHSRKR
Sbjct: 241 DSDSESESESDSDHERSRRKSRRHSRKR 268

[Close]

BLAST of CmaCh17G003650 vs. ExPASy TrEMBL
Match: A0A6J1H6H5 (zinc finger CCHC domain-containing protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111460472 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 1.5e-118
Identity = 264/268 (98.51%), Postives = 266/268 (99.25%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASV 180
           SRTQQLKNPKLRMKMAVSLE+DNPDSGDEEKKTKK+QLKKKSKRKHRSE KSNSDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASV 180

Query: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240
           FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSESESESDSDHERSRRKSRRHSRKR 269
           DSDS SESESDSDHERSRRKSRRHSRKR
Sbjct: 241 DSDSGSESESDSDHERSRRKSRRHSRKR 268

[Close]

BLAST of CmaCh17G003650 vs. ExPASy TrEMBL
Match: A0A0A0LJ33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249870 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 7.0e-105
Identity = 248/268 (92.54%), Postives = 251/268 (93.66%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIK SMS AGGAAAQCQKCYQ GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSGAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASV 180
           SRTQQLKNPKLRMKM VSLE+DNPD G EEKK KK   KKKSKRKHRS  KSNSDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPG-EEKKPKKHS-KKKSKRKHRSNAKSNSDSEASV 180

Query: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240
           FETDSGSSSVT SDDSSEESSSDYSSSS+SESERS  RRRRKKQKRGRRKRRYSSSSDSS
Sbjct: 181 FETDSGSSSVTESDDSSEESSSDYSSSSESESERS--RRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSESESESDSDHERSRRKSRRHSRKR 269
           DSDS SESESDSD+ERSRRKSRRHSRKR
Sbjct: 241 DSDSRSESESDSDNERSRRKSRRHSRKR 264

[Close]

BLAST of CmaCh17G003650 vs. ExPASy TrEMBL
Match: A0A1S3CDQ2 (zinc finger CCHC domain-containing protein 10 OS=Cucumis melo OX=3656 GN=LOC103499707 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 7.7e-104
Identity = 243/268 (90.67%), Postives = 250/268 (93.28%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIK SMSSAGGAAAQCQKCYQ GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASV 180
           SRTQQLKNPKLRMKM VSLE+DNPD G+EEK   K+  K KSKRKHRS  KS+SDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEEK--PKKHSKNKSKRKHRSNAKSDSDSEASV 180

Query: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240
           FETDSGSSSVT SDDSSEESSSDYSSSS+SE ERS  RRRRKKQKRGRRKRRYSSSSDSS
Sbjct: 181 FETDSGSSSVTESDDSSEESSSDYSSSSESECERS--RRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSESESESDSDHERSRRKSRRHSRKR 269
           DSDS SESESDSD+ERSRRKSRRHSR+R
Sbjct: 241 DSDSRSESESDSDNERSRRKSRRHSRRR 264

[Close]

BLAST of CmaCh17G003650 vs. ExPASy TrEMBL
Match: A0A5A7TW64 (Zinc finger CCHC domain-containing protein 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001260 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 7.7e-104
Identity = 243/268 (90.67%), Postives = 250/268 (93.28%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIK SMSSAGGAAAQCQKCYQ GHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKGSMSSAGGAAAQCQKCYQMGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASV 180
           SRTQQLKNPKLRMKM VSLE+DNPD G+EEK   K+  K KSKRKHRS  KS+SDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMEVSLELDNPDPGEEEK--PKKHSKNKSKRKHRSNAKSDSDSEASV 180

Query: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240
           FETDSGSSSVT SDDSSEESSSDYSSSS+SE ERS  RRRRKKQKRGRRKRRYSSSSDSS
Sbjct: 181 FETDSGSSSVTESDDSSEESSSDYSSSSESECERS--RRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSESESESDSDHERSRRKSRRHSRKR 269
           DSDS SESESDSD+ERSRRKSRRHSR+R
Sbjct: 241 DSDSRSESESDSDNERSRRKSRRHSRRR 264

[Close]

BLAST of CmaCh17G003650 vs. NCBI nr
Match: XP_023006369.1 (zinc finger CCHC domain-containing protein 10 [Cucurbita maxima] >XP_023006370.1 zinc finger CCHC domain-containing protein 10 [Cucurbita maxima])

HSP 1 Score: 443.4 bits (1139), Expect = 1.4e-120
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASV 180
           SRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASV 180

Query: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240
           FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSESESESDSDHERSRRKSRRHSRKR 269
           DSDSESESESDSDHERSRRKSRRHSRKR
Sbjct: 241 DSDSESESESDSDHERSRRKSRRHSRKR 268

[Close]

BLAST of CmaCh17G003650 vs. NCBI nr
Match: KAG7013679.1 (Zinc finger CCHC domain-containing protein 10 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 438.3 bits (1126), Expect = 4.6e-119
Identity = 265/268 (98.88%), Postives = 267/268 (99.63%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASV 180
           SRTQQLKNPKLRMKMAVSLE+DNPDSGDEEKKTKK+QLKKKSKRKHRSE KSNSDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASV 180

Query: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240
           FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSESESESDSDHERSRRKSRRHSRKR 269
           DSDSESESESDSDHERSRRKSRRHSRKR
Sbjct: 241 DSDSESESESDSDHERSRRKSRRHSRKR 268

[Close]

BLAST of CmaCh17G003650 vs. NCBI nr
Match: KAG6575110.1 (Zinc finger CCHC domain-containing protein 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 437.2 bits (1123), Expect = 1.0e-118
Identity = 264/268 (98.51%), Postives = 267/268 (99.63%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 40  MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 99

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKVSMS+AGGAAAQCQKCYQSGHWTYECKNERVYISRP
Sbjct: 100 EAKRQMYLMSTEKAVRLGERKDIKVSMSTAGGAAAQCQKCYQSGHWTYECKNERVYISRP 159

Query: 121 SRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASV 180
           SRTQQLKNPKLRMKMAVSLE+DNPDSGDEEKKTKK+QLKKKSKRKHRSE KSNSDSEASV
Sbjct: 160 SRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASV 219

Query: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240
           FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS
Sbjct: 220 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 279

Query: 241 DSDSESESESDSDHERSRRKSRRHSRKR 269
           DSDSESESESDSDHERSRRKSRRHSRKR
Sbjct: 280 DSDSESESESDSDHERSRRKSRRHSRKR 307

[Close]

BLAST of CmaCh17G003650 vs. NCBI nr
Match: XP_022959515.1 (zinc finger CCHC domain-containing protein 10-like [Cucurbita moschata])

HSP 1 Score: 435.6 bits (1119), Expect = 3.0e-118
Identity = 264/268 (98.51%), Postives = 266/268 (99.25%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASV 180
           SRTQQLKNPKLRMKMAVSLE+DNPDSGDEEKKTKK+QLKKKSKRKHRSE KSNSDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASV 180

Query: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240
           FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSESESESDSDHERSRRKSRRHSRKR 269
           DSDS SESESDSDHERSRRKSRRHSRKR
Sbjct: 241 DSDSGSESESDSDHERSRRKSRRHSRKR 268

[Close]

BLAST of CmaCh17G003650 vs. NCBI nr
Match: XP_023548562.1 (zinc finger CCHC domain-containing protein 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 426.0 bits (1094), Expect = 2.4e-115
Identity = 260/268 (97.01%), Postives = 262/268 (97.76%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120
           EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP
Sbjct: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAGGAAAQCQKCYQSGHWTYECKNERVYISRP 120

Query: 121 SRTQQLKNPKLRMKMAVSLEMDNPDSGDEEKKTKKRQLKKKSKRKHRSELKSNSDSEASV 180
           SRTQQLKNPKLRMKMAVSLE+DNPDSGDEEKKTKK+QLKKKSKRKHRSE KSNSDSEASV
Sbjct: 121 SRTQQLKNPKLRMKMAVSLELDNPDSGDEEKKTKKKQLKKKSKRKHRSEPKSNSDSEASV 180

Query: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRKKQKRGRRKRRYSSSSDSS 240
           FETDSGSSSVTGSDDSSEESSSDYSSSSDSESE    RRRRKKQKRGRRKRRYSSSSDSS
Sbjct: 181 FETDSGSSSVTGSDDSSEESSSDYSSSSDSESE----RRRRKKQKRGRRKRRYSSSSDSS 240

Query: 241 DSDSESESESDSDHERSRRKSRRHSRKR 269
           DSDSESE ESDSDHERSRRKSRRHSRKR
Sbjct: 241 DSDSESEPESDSDHERSRRKSRRHSRKR 264

[Close]

BLAST of CmaCh17G003650 vs. TAIR 10
Match: AT5G49400.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 272.7 bits (696), Expect = 3.1e-73
Identity = 189/283 (66.78%), Postives = 219/283 (77.39%), Query Frame = 0


Query: 1   MSSKKEEKSQAAAERIKAAALSAAKGLSRAQAERAATAAARNVNAYGQKEEGPSRWQEKR 60
           MS+ K+EKSQ AA+RIKAA L+AAKGLSR QAERAA AAARNVNAYGQKEEGPSRWQEKR
Sbjct: 1   MSNSKDEKSQDAADRIKAATLTAAKGLSRTQAERAAAAAARNVNAYGQKEEGPSRWQEKR 60

Query: 61  EAKRQMYLMSTEKAVRLGERKDIKVSMSSAG---GAAAQCQKCYQSGHWTYECKNERVYI 120
           E KRQMYLMSTEKAVRLGERKD  +S S+ G    AA+QCQKC+Q+GHWTYECKNERVYI
Sbjct: 61  ELKRQMYLMSTEKAVRLGERKDKTMSASAVGSSASAASQCQKCFQAGHWTYECKNERVYI 120

Query: 121 SRPSRTQQLKNPKLRMKMAVSLEMDNPDSGDEEK-------KTKKRQLKKKSKRKHRSEL 180
           SRPSRTQQLKNPKLR K +V  ++D  D  DEE+       K +  +  KKSKRKHRS+ 
Sbjct: 121 SRPSRTQQLKNPKLRTKPSVD-DLDGSDDDDEEERPDATNGKAEVEKRSKKSKRKHRSKS 180

Query: 181 KSNSDSEASVFETDSGSSSVTGSDDSSEESSSDYSSSSDSESERSRRRRRRK-----KQK 240
            S SDSEASVFETD        SD SS ESSS+YSSSSDSE ER RRR+ +K     KQ+
Sbjct: 181 DSESDSEASVFETD--------SDGSSGESSSEYSSSSDSEDERRRRRKAKKSKKKQKQR 240

Query: 241 RGRRKRRYSSSSDSSDSDSESESESDSDHERSRRKSRRHSRKR 269
           + RR+R  SSSS+SS+S+S S+S+SD D  R ++KS+RHS KR
Sbjct: 241 KERRRRYSSSSSESSESESASDSDSDEDRSRRKKKSKRHSNKR 274

The following BLAST results are available for this feature:

BLAST of CmaCh17G003650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5EB97	5.5e-06	38.15	Zinc finger CCHC domain-containing protein 10 OS=Rattus norvegicus OX=10116 GN=Z...	[more]
Q8TBK6	2.1e-05	35.68	Zinc finger CCHC domain-containing protein 10 OS=Homo sapiens OX=9606 GN=ZCCHC10...	[more]
Q9CX48	6.1e-05	39.52	Zinc finger CCHC domain-containing protein 10 OS=Mus musculus OX=10090 GN=Zcchc1...	[more]

BLAST of CmaCh17G003650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L1Z2	7.0e-121	100.00	zinc finger CCHC domain-containing protein 10 OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1H6H5	1.5e-118	98.51	zinc finger CCHC domain-containing protein 10-like OS=Cucurbita moschata OX=3662...	[more]
A0A0A0LJ33	7.0e-105	92.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G249870 PE=4 SV=1	[more]
A0A1S3CDQ2	7.7e-104	90.67	zinc finger CCHC domain-containing protein 10 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5A7TW64	7.7e-104	90.67	Zinc finger CCHC domain-containing protein 10 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of CmaCh17G003650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006369.1	1.4e-120	100.00	zinc finger CCHC domain-containing protein 10 [Cucurbita maxima] >XP_023006370.1...	[more]
KAG7013679.1	4.6e-119	98.88	Zinc finger CCHC domain-containing protein 10 [Cucurbita argyrosperma subsp. arg...	[more]
KAG6575110.1	1.0e-118	98.51	Zinc finger CCHC domain-containing protein 10, partial [Cucurbita argyrosperma s...	[more]
XP_022959515.1	3.0e-118	98.51	zinc finger CCHC domain-containing protein 10-like [Cucurbita moschata]	[more]
XP_023548562.1	2.4e-115	97.01	zinc finger CCHC domain-containing protein 10-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh17G003650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49400.1	3.1e-73	66.78	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13917	zf-CCHC_3	coord: 92..129 e-value: 5.7E-20 score: 71.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..232
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..268
IPR039715	Zinc finger CCHC domain-containing protein 10	PANTHER	PTHR13491	ZCCHC10 PROTEIN	coord: 1..253
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 91..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G003650.1	CmaCh17G003650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding