CmaCh17G003420 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G003420
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr17: 1862770 .. 1863588 (+)
RNA-Seq Expression	CmaCh17G003420
Synteny	CmaCh17G003420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCACTTCTTTTAATCTCTCTGTGAGATGATTACTTCTTCTAAAATATTTCTTTAATTTTCAAAAGTTTTAATAATACCATTAAAACTAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCTTACAGACCTGTAAAAGTATTTTTTAATTTTAAAAAAATAAACATGTTAATTATTTTTTTATATAATTTAAGGGTATTTTTAAAATAAATTCTCAATGGTAAAAGATATTTTTTAAATTATTATTTTTAAAATTTAAAGGTATTATTGAAATTATTTTATTTGTAATTAAAAAAAGGAATTATTTATTTTCTAACAAACTTATTCCATCTGTAGGGCCCACAAAGTCCCCATAATTAAGCTTTGTTCCAGAGCTATAAAATGGACCAAACCCAATGAAGATTTACAAACCAACAAAGCAATCAAGAACAGTGTTTGAAAGAGAGAGAAATTATGGCTCCTCGTGGTGATCTGGCAAAGATTGGAAGAGAAGGATTTGACCTAATTGACGAATACTTCGGTCGAGCACCGGCGACGAGAAGGGCGGCAGCGGCGGCGGCGGCGAGGCCGGCTCTGCCGCAGGCGCCGTGTAAGGCGGAGCAACCTCCGAGGAAGAAGAGAGAAAAGATGCCTGTAGCGGTGAACTGCAATCAGGTGGCCAAAGCCCGCGGCGGAGTTGTGATAACCACTTGGCGTGCGGCAAAATGA

mRNA sequence

TCTTCACTTCTTTTAATCTCTCTATTTACAAACCAACAAAGCAATCAAGAACAGTGTTTGAAAGAGAGAGAAATTATGGCTCCTCGTGGTGATCTGGCAAAGATTGGAAGAGAAGGATTTGACCTAATTGACGAATACTTCGGTCGAGCACCGGCGACGAGAAGGGCGGCAGCGGCGGCGGCGGCGAGGCCGGCTCTGCCGCAGGCGCCGTGTAAGGCGGAGCAACCTCCGAGGAAGAAGAGAGAAAAGATGCCTGTAGCGGTGAACTGCAATCAGGTGGCCAAAGCCCGCGGCGGAGTTGTGATAACCACTTGGCGTGCGGCAAAATGA

Coding sequence (CDS)

TCTTCACTTCTTTTAATCTCTCTATTTACAAACCAACAAAGCAATCAAGAACAGTGTTTGAAAGAGAGAGAAATTATGGCTCCTCGTGGTGATCTGGCAAAGATTGGAAGAGAAGGATTTGACCTAATTGACGAATACTTCGGTCGAGCACCGGCGACGAGAAGGGCGGCAGCGGCGGCGGCGGCGAGGCCGGCTCTGCCGCAGGCGCCGTGTAAGGCGGAGCAACCTCCGAGGAAGAAGAGAGAAAAGATGCCTGTAGCGGTGAACTGCAATCAGGTGGCCAAAGCCCGCGGCGGAGTTGTGATAACCACTTGGCGTGCGGCAAAATGA

Protein sequence

SSLLLISLFTNQQSNQEQCLKEREIMAPRGDLAKIGREGFDLIDEYFGRAPATRRAAAAAAARPALPQAPCKAEQPPRKKREKMPVAVNCNQVAKARGGVVITTWRAAK

Homology

[Close]

BLAST of CmaCh17G003420 vs. ExPASy TrEMBL
Match: A0A0A0KG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.7e-20
Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 20  LKEREIMAPRGDLAKIGREGFDLIDEYFGRAPAT-RRAAAAAAARPALPQAPCKAEQPPR 79
           L+EREI   RGDLAKIGREGF +IDEYFGRA +T  R  AA  ARPALPQ P KAEQPPR
Sbjct: 4   LREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPR 63

Query: 80  KKREKMPVAVNCNQVAKARGGVVITTWR 107
            ++EK   AV  +QVAK  GG VITTWR
Sbjct: 64  IRKEKPVAAVTSDQVAKHGGGTVITTWR 91

[Close]

BLAST of CmaCh17G003420 vs. ExPASy TrEMBL
Match: A0A0A0KI19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 49/90 (54.44%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 21  KEREIMAPRGDLAKIGREGFDLIDEYFGRAPAT--RRAAAAAAARPALPQAPCK-AEQPP 80
           +EREI+    +LA+IG EGF LID++FGRA  T  RR  AA   RPA  Q P K AEQPP
Sbjct: 4   REREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPP 63

Query: 81  RKKREKMPVAVNCNQVAKARGGVVITTWRA 108
            K +EK    V  + +AK RGG+VITTWR+
Sbjct: 64  SKTKEKQGAVVTSDHLAKTRGGIVITTWRS 93

[Close]

BLAST of CmaCh17G003420 vs. NCBI nr
Match: KAG6575081.1 (hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-35
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 26  MAPRGDLAKIGREGFDLIDEYFGRAPATRRAAAAAAARPALPQAPCKAEQPPRKKREKMP 85
           MA RGDLAKIGREGFDLIDEYFGRAPATRRAAA AAARPALPQAPCKAEQPPRKKREKMP
Sbjct: 1   MARRGDLAKIGREGFDLIDEYFGRAPATRRAAAVAAARPALPQAPCKAEQPPRKKREKMP 60

Query: 86  VAVNCNQVAKARGGVVITTWRAAK 110
           VAVNCNQVAKARGG+VITTWRAAK
Sbjct: 61  VAVNCNQVAKARGGIVITTWRAAK 84

[Close]

BLAST of CmaCh17G003420 vs. NCBI nr
Match: KAG6575082.1 (hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.7 bits (348), Expect = 3.1e-29
Identity = 71/84 (84.52%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 26  MAPRGDLAKIGREGFDLIDEYFGRAPATRRAAAAAAARPALPQAPCKAEQPPRKKREKMP 85
           MAPR DLAKIGREGF+LIDEYFGR PATRR    A ARPALPQAPCKAEQPPRK REK+P
Sbjct: 1   MAPRADLAKIGREGFELIDEYFGRVPATRR---PAVARPALPQAPCKAEQPPRKMREKLP 60

Query: 86  VAVNCNQVAKARGGVVITTWRAAK 110
           V VNCNQVA+ARGGVVITTWRA K
Sbjct: 61  VPVNCNQVARARGGVVITTWRAPK 81

[Close]

BLAST of CmaCh17G003420 vs. NCBI nr
Match: XP_023548315.1 (multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.6 bits (301), Expect = 8.7e-24
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 26 MAPRGDLAKIGREGFDLIDEYFGRAPATRRAAAAAAARPALPQAPCKAEQPPRKKREKMP 85
          MAPR DLAKIGREGF+LIDEYFGR PATRRAAAAAA RPALPQAPCKAEQPPRK REK+P
Sbjct: 1  MAPRADLAKIGREGFELIDEYFGRVPATRRAAAAAAGRPALPQAPCKAEQPPRKMREKLP 60

Query: 86 VAVNCNQ 93
          V VNCNQ
Sbjct: 61 VPVNCNQ 67

[Close]

BLAST of CmaCh17G003420 vs. NCBI nr
Match: KGN47422.1 (hypothetical protein Csa_021740 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 7.6e-20
Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 20  LKEREIMAPRGDLAKIGREGFDLIDEYFGRAPAT-RRAAAAAAARPALPQAPCKAEQPPR 79
           L+EREI   RGDLAKIGREGF +IDEYFGRA +T  R  AA  ARPALPQ P KAEQPPR
Sbjct: 4   LREREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAAKTARPALPQPPRKAEQPPR 63

Query: 80  KKREKMPVAVNCNQVAKARGGVVITTWR 107
            ++EK   AV  +QVAK  GG VITTWR
Sbjct: 64  IRKEKPVAAVTSDQVAKHGGGTVITTWR 91

[Close]

BLAST of CmaCh17G003420 vs. NCBI nr
Match: KGN47421.1 (hypothetical protein Csa_021737 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 3.4e-12
Identity = 49/90 (54.44%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 21  KEREIMAPRGDLAKIGREGFDLIDEYFGRAPAT--RRAAAAAAARPALPQAPCK-AEQPP 80
           +EREI+    +LA+IG EGF LID++FGRA  T  RR  AA   RPA  Q P K AEQPP
Sbjct: 4   REREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVAATEMRPAQMQPPRKVAEQPP 63

Query: 81  RKKREKMPVAVNCNQVAKARGGVVITTWRA 108
            K +EK    V  + +AK RGG+VITTWR+
Sbjct: 64  SKTKEKQGAVVTSDHLAKTRGGIVITTWRS 93

The following BLAST results are available for this feature:

BLAST of CmaCh17G003420 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G003420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG95	3.7e-20	68.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1	[more]
A0A0A0KI19	1.7e-12	54.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1	[more]

BLAST of CmaCh17G003420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575081.1	1.7e-35	96.43	hypothetical protein SDJN03_25720, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6575082.1	3.1e-29	84.52	hypothetical protein SDJN03_25721, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023548315.1	8.7e-24	89.55	multiple organellar RNA editing factor 3, mitochondrial [Cucurbita pepo subsp. p...	[more]
KGN47422.1	7.6e-20	68.18	hypothetical protein Csa_021740 [Cucumis sativus]	[more]
KGN47421.1	3.4e-12	54.44	hypothetical protein Csa_021737 [Cucumis sativus]	[more]

BLAST of CmaCh17G003420 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G003420.1	CmaCh17G003420.1	mRNA