CmaCh17G001570 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh17G001570
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr17: 798843 .. 799270 (-)
RNA-Seq ExpressionCmaCh17G001570
SyntenyCmaCh17G001570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAGATAGGGTATTAGGCGACTCGCTAGGAGCACACAAGAGCTTATTGTTTGTGTCATGTATTAGCTTCTCATTTGGTGTGATTTTAAATGCAGGCGACGTAAACACATAAATAGTACTCTGGTTGATCGCAATATTGGATGTGAGACGAGAGATGTGCTTCGCACCACTACAAAGTTTGGCCACTCAAGAAGTGTACATTACATGAAGTTTCCCTGCAGGCTAGGTAAGCCCACCCGGCCATGTGAGACTAAATTCAATGCTTTGCATATTTCCATGATATCCTTTTTCCATTCTTCTGCTCAATTCTTTATTTGCAGCAGCACCACATATCTCTTGCTTCTTCGTTGTTCGTGTTACTGTTGTAATTGAACGCTTAAAGCTCTTACCAATCGAATTTGATGTTGTTTCGTTAGATTCCTAG

mRNA sequence

ATGGCCAAGATAGGGCGACGTAAACACATAAATAGTACTCTGGTTGATCGCAATATTGGATGTGAGACGAGAGATGTGCTTCGCACCACTACAAAGTTTGGCCACTCAAGAAGTGTACATTACATGAAGTTTCCCTGCAGGCTAGCAGCACCACATATCTCTTGCTTCTTCGTTGTTCGTGTTACTGTTGTAATTGAACGCTTAAAGCTCTTACCAATCGAATTTGATGTTGTTTCGTTAGATTCCTAG

Coding sequence (CDS)

ATGGCCAAGATAGGGCGACGTAAACACATAAATAGTACTCTGGTTGATCGCAATATTGGATGTGAGACGAGAGATGTGCTTCGCACCACTACAAAGTTTGGCCACTCAAGAAGTGTACATTACATGAAGTTTCCCTGCAGGCTAGCAGCACCACATATCTCTTGCTTCTTCGTTGTTCGTGTTACTGTTGTAATTGAACGCTTAAAGCTCTTACCAATCGAATTTGATGTTGTTTCGTTAGATTCCTAG

Protein sequence

MAKIGRRKHINSTLVDRNIGCETRDVLRTTTKFGHSRSVHYMKFPCRLAAPHISCFFVVRVTVVIERLKLLPIEFDVVSLDS
Homology
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BLAST of CmaCh17G001570 vs. NCBI nr
Match: KAG6574910.1 (hypothetical protein SDJN03_25549, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.8 bits (403), Expect = 9.7e-36
Identity = 79/82 (96.34%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 1  MAKIGRRKHINSTLVDRNIGCETRDVLRTTTKFGHSRSVHYMKFPCRLAAPHISCFFVVR 60
          MAKIGRRKHIN TLVDRNIGCETRDVLRTTTKFG SRSVHYMKFPCRLA PHISCFFVVR
Sbjct: 1  MAKIGRRKHINGTLVDRNIGCETRDVLRTTTKFGRSRSVHYMKFPCRLATPHISCFFVVR 60

Query: 61 VTVVIERLKLLPIEFDVVSLDS 83
          VTVVIERLKLLPIEFDVVSLDS
Sbjct: 61 VTVVIERLKLLPIEFDVVSLDS 82

The following BLAST results are available for this feature:
BLAST of CmaCh17G001570 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh17G001570 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh17G001570 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6574910.19.7e-3696.34hypothetical protein SDJN03_25549, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh17G001570 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G001570.1CmaCh17G001570.1mRNA