CmaCh17G001370 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G001370
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	mitochondrial import receptor subunit TOM9-2-like
Location	Cma_Chr17: 698394 .. 698705 (+)
RNA-Seq Expression	CmaCh17G001370
Synteny	CmaCh17G001370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTCGAGGTAATAAGCGGCCTTCTATTACCGATGGCGATGAGAATTTAGGCGTTCTATCTAGGGTTTCTCGTTCCGTCTCCGATTCCCAAATCGTCCGGCGGGCGAAGAGCACAGCTTCCGACGCTGCCTTCGTTACCCAAAAACTCCTCCGTAGTACTGGTAAAGCTGCGTGGATTGCAGGGACGACTTTTCTCATTTTGGTGGTGCCGCTCATCATTGAGATGGATCGCGAGCAGCAGTTCAATGAGCTCGAGATGCAGCAGGCGAGTCTACTTGGTACTCCGGCCACTGCTGCTCCTAAATGA

mRNA sequence

ATGGCGTCTCGAGGTAATAAGCGGCCTTCTATTACCGATGGCGATGAGAATTTAGGCGTTCTATCTAGGGTTTCTCGTTCCGTCTCCGATTCCCAAATCGTCCGGCGGGCGAAGAGCACAGCTTCCGACGCTGCCTTCGTTACCCAAAAACTCCTCCGTAGTACTGGTAAAGCTGCGTGGATTGCAGGGACGACTTTTCTCATTTTGGTGGTGCCGCTCATCATTGAGATGGATCGCGAGCAGCAGTTCAATGAGCTCGAGATGCAGCAGGCGAGTCTACTTGGTACTCCGGCCACTGCTGCTCCTAAATGA

Coding sequence (CDS)

ATGGCGTCTCGAGGTAATAAGCGGCCTTCTATTACCGATGGCGATGAGAATTTAGGCGTTCTATCTAGGGTTTCTCGTTCCGTCTCCGATTCCCAAATCGTCCGGCGGGCGAAGAGCACAGCTTCCGACGCTGCCTTCGTTACCCAAAAACTCCTCCGTAGTACTGGTAAAGCTGCGTGGATTGCAGGGACGACTTTTCTCATTTTGGTGGTGCCGCTCATCATTGAGATGGATCGCGAGCAGCAGTTCAATGAGCTCGAGATGCAGCAGGCGAGTCTACTTGGTACTCCGGCCACTGCTGCTCCTAAATGA

Protein sequence

MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAWIAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK

Homology

[Close]

BLAST of CmaCh17G001370 vs. ExPASy Swiss-Prot
Match: Q9FNC9 (Mitochondrial import receptor subunit TOM9-2 OS=Arabidopsis thaliana OX=3702 GN=TOM9-2 PE=1 SV=3)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 56/84 (66.67%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 14 GDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAWIAGTTFLILVVPL 73
          GD N  +L+R    +S+S+IV + +  A DA  V++KLLRSTGKAAWIAGTTFLILVVPL
Sbjct: 14 GDPN--ILAR----ISNSEIVSQGRRAAGDAVEVSKKLLRSTGKAAWIAGTTFLILVVPL 73

Query: 74 IIEMDREQQFNELEMQQASLLGTP 98
          IIEMDRE Q NE+E+QQASLLG P
Sbjct: 74 IIEMDREAQINEIELQQASLLGAP 91

[Close]

BLAST of CmaCh17G001370 vs. ExPASy Swiss-Prot
Match: O64497 (Mitochondrial import receptor subunit TOM9-1 OS=Arabidopsis thaliana OX=3702 GN=TOM9-1 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-16
Identity = 42/80 (52.50%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 22  SRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAWIAGTTFLILVVPLIIEMDREQ 81
           S +   +S+  IV + +  A DA +V++KLL+STGKAAWIAGTTFLIL VPLI+E++++ 
Sbjct: 13  SSILAKISNYDIVSQGRRAACDAVYVSKKLLKSTGKAAWIAGTTFLILAVPLILELEQDH 72

Query: 82  QFNELEMQQASLLGTPATAA 102
           +  E++ +QASLLGTP   A
Sbjct: 73  RLGEIDFEQASLLGTPPVGA 92

[Close]

BLAST of CmaCh17G001370 vs. ExPASy TrEMBL
Match: A0A6J1L3Y9 (mitochondrial import receptor subunit TOM9-2-like OS=Cucurbita maxima OX=3661 GN=LOC111498936 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.2e-46
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 60
           MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW
Sbjct: 48  MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 107

Query: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 104
           IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK
Sbjct: 108 IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 150

[Close]

BLAST of CmaCh17G001370 vs. ExPASy TrEMBL
Match: A0A6J1H712 (mitochondrial import receptor subunit TOM9-2-like OS=Cucurbita moschata OX=3662 GN=LOC111460199 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.2e-46
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 60
           MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW
Sbjct: 43  MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 102

Query: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 104
           IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK
Sbjct: 103 IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 145

[Close]

BLAST of CmaCh17G001370 vs. ExPASy TrEMBL
Match: A0A6J1CCC4 (mitochondrial import receptor subunit TOM9-2-like OS=Momordica charantia OX=3673 GN=LOC111009913 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 5.0e-43
Identity = 98/103 (95.15%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 60
           MASRGNKR S+T+GDEN GVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTG+AAW
Sbjct: 1   MASRGNKRASLTNGDENSGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGRAAW 60

Query: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 104
           IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK
Sbjct: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 103

[Close]

BLAST of CmaCh17G001370 vs. ExPASy TrEMBL
Match: A0A5D3CY80 (Mitochondrial import receptor subunit TOM9-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00090 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.9e-42
Identity = 96/103 (93.20%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 60
           MASRGNKRPSIT+GD+NLG+LSRVSRSVSDSQIVRRAKSTASDAAFV++KLLRSTGKAAW
Sbjct: 1   MASRGNKRPSITNGDDNLGILSRVSRSVSDSQIVRRAKSTASDAAFVSKKLLRSTGKAAW 60

Query: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 104
           IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATA  K
Sbjct: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAGSK 103

[Close]

BLAST of CmaCh17G001370 vs. ExPASy TrEMBL
Match: A0A0A0LNL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G171830 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.9e-42
Identity = 96/103 (93.20%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 60
           MASRGNKRPSIT+GD+NLG+LSRVSRSVSDSQIVRRAKSTASDAAFV++KLLRSTGKAAW
Sbjct: 1   MASRGNKRPSITNGDDNLGILSRVSRSVSDSQIVRRAKSTASDAAFVSKKLLRSTGKAAW 60

Query: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 104
           IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATA  K
Sbjct: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAGSK 103

[Close]

BLAST of CmaCh17G001370 vs. NCBI nr
Match: XP_023006088.1 (mitochondrial import receptor subunit TOM9-2-like [Cucurbita maxima])

HSP 1 Score: 192.6 bits (488), Expect = 1.7e-45
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 60
           MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW
Sbjct: 48  MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 107

Query: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 104
           IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK
Sbjct: 108 IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 150

[Close]

BLAST of CmaCh17G001370 vs. NCBI nr
Match: XP_022959104.1 (mitochondrial import receptor subunit TOM9-2-like [Cucurbita moschata])

HSP 1 Score: 192.6 bits (488), Expect = 1.7e-45
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 60
           MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW
Sbjct: 43  MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 102

Query: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 104
           IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK
Sbjct: 103 IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 145

[Close]

BLAST of CmaCh17G001370 vs. NCBI nr
Match: XP_023548768.1 (mitochondrial import receptor subunit TOM9-2-like [Cucurbita pepo subsp. pepo] >KAG6574890.1 Mitochondrial import receptor subunit TOM9-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013462.1 Mitochondrial import receptor subunit TOM9-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192.6 bits (488), Expect = 1.7e-45
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 60
           MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW
Sbjct: 1   MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 60

Query: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 104
           IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK
Sbjct: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 103

[Close]

BLAST of CmaCh17G001370 vs. NCBI nr
Match: XP_038875758.1 (mitochondrial import receptor subunit TOM9-2-like [Benincasa hispida])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 60
           MASRGNKRPSIT+GD+NLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW
Sbjct: 1   MASRGNKRPSITNGDDNLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 60

Query: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 104
           IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAA K
Sbjct: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAASK 103

[Close]

BLAST of CmaCh17G001370 vs. NCBI nr
Match: XP_023514145.1 (mitochondrial import receptor subunit TOM9-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 184.5 bits (467), Expect = 4.6e-43
Identity = 98/103 (95.15%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MASRGNKRPSITDGDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAW 60
           MASRGNKRPSIT+GD+NLGVLSRVSRSVSDSQIV+RAKSTASDAAFV+QKLLRSTGKAAW
Sbjct: 1   MASRGNKRPSITNGDDNLGVLSRVSRSVSDSQIVQRAKSTASDAAFVSQKLLRSTGKAAW 60

Query: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGTPATAAPK 104
           IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLG PATAAPK
Sbjct: 61  IAGTTFLILVVPLIIEMDREQQFNELEMQQASLLGAPATAAPK 103

[Close]

BLAST of CmaCh17G001370 vs. TAIR 10
Match: AT5G43970.1 (translocase of outer membrane 22-V )

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-21
Identity = 56/84 (66.67%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 14 GDENLGVLSRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAWIAGTTFLILVVPL 73
          GD N  +L+R    +S+S+IV + +  A DA  V++KLLRSTGKAAWIAGTTFLILVVPL
Sbjct: 14 GDPN--ILAR----ISNSEIVSQGRRAAGDAVEVSKKLLRSTGKAAWIAGTTFLILVVPL 73

Query: 74 IIEMDREQQFNELEMQQASLLGTP 98
          IIEMDRE Q NE+E+QQASLLG P
Sbjct: 74 IIEMDREAQINEIELQQASLLGAP 91

[Close]

BLAST of CmaCh17G001370 vs. TAIR 10
Match: AT1G04070.1 (translocase of outer membrane 22-I )

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-17
Identity = 42/80 (52.50%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 22  SRVSRSVSDSQIVRRAKSTASDAAFVTQKLLRSTGKAAWIAGTTFLILVVPLIIEMDREQ 81
           S +   +S+  IV + +  A DA +V++KLL+STGKAAWIAGTTFLIL VPLI+E++++ 
Sbjct: 13  SSILAKISNYDIVSQGRRAACDAVYVSKKLLKSTGKAAWIAGTTFLILAVPLILELEQDH 72

Query: 82  QFNELEMQQASLLGTPATAA 102
           +  E++ +QASLLGTP   A
Sbjct: 73  RLGEIDFEQASLLGTPPVGA 92

The following BLAST results are available for this feature:

BLAST of CmaCh17G001370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNC9	1.5e-20	66.67	Mitochondrial import receptor subunit TOM9-2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O64497	2.2e-16	52.50	Mitochondrial import receptor subunit TOM9-1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of CmaCh17G001370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L3Y9	8.2e-46	100.00	mitochondrial import receptor subunit TOM9-2-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1H712	8.2e-46	100.00	mitochondrial import receptor subunit TOM9-2-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1CCC4	5.0e-43	95.15	mitochondrial import receptor subunit TOM9-2-like OS=Momordica charantia OX=3673...	[more]
A0A5D3CY80	1.9e-42	93.20	Mitochondrial import receptor subunit TOM9-2-like OS=Cucumis melo var. makuwa OX...	[more]
A0A0A0LNL3	1.9e-42	93.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G171830 PE=3 SV=1	[more]

BLAST of CmaCh17G001370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006088.1	1.7e-45	100.00	mitochondrial import receptor subunit TOM9-2-like [Cucurbita maxima]	[more]
XP_022959104.1	1.7e-45	100.00	mitochondrial import receptor subunit TOM9-2-like [Cucurbita moschata]	[more]
XP_023548768.1	1.7e-45	100.00	mitochondrial import receptor subunit TOM9-2-like [Cucurbita pepo subsp. pepo] >...	[more]
XP_038875758.1	1.2e-43	97.09	mitochondrial import receptor subunit TOM9-2-like [Benincasa hispida]	[more]
XP_023514145.1	4.6e-43	95.15	mitochondrial import receptor subunit TOM9-2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh17G001370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43970.1	1.1e-21	66.67	translocase of outer membrane 22-V	[more]
AT1G04070.1	1.6e-17	52.50	translocase of outer membrane 22-I	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005683	Mitochondrial import receptor subunit Tom22	PFAM	PF04281	Tom22	coord: 38..90 e-value: 9.1E-8 score: 32.0
IPR017411	Mitochondrial outer membrane translocase complex, subunit Tom22, plant	PANTHER	PTHR46867	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM9-2	coord: 1..103
None	No IPR available	PANTHER	PTHR46867:SF6	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM9-2-LIKE	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G001370.1	CmaCh17G001370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005741	mitochondrial outer membrane