CmaCh17G000410 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G000410
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ycf20-like protein isoform X2
Location	Cma_Chr17: 183971 .. 186114 (-)
RNA-Seq Expression	CmaCh17G000410
Synteny	CmaCh17G000410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTTTTATTAAATTGGCTAAAAAATGGACTATCCGAGTTCTAAGGTACGGCGCCAAAATCTGCCCCCACGCCTAAGACCGACGATTGATGAAAGAGACGAACAGTTCTTGCAGCTAAACCTCCATGGGAGAATCGTGAAAGATAATCTGACAAGTTGCTTAGGCTCGGATATCGATCTGTAAGCATTCTATTCAACCTATTTCTTGATTTTCTGGTTAATGTCTATTCAGATTACTTCAATTTCCCCTCTGCGAGCTGTTGTTCAATTGATAGAATTCTAATTAGGTTTGCAGGAAATTGGTCTGCACCTTGAATGTCTACGACTGAATCGTTGTATTTCAGTGTAATTTAGAGCGTGCGTAAAGGACTGTGGCTGAAAGATTTACAGAAATTGAAAATTTGACGATTAGGAAGATTGTATCTGAGTTGTGCGAATAGATTTTAAGTTCTGCAGTTGAATTTGAACCATTTGCTTATTTTTACTAACTCTAAGCTATTTGGTTCACGCCCACAAGGTAATGGGCAGAGCGGATTTAGATTAAAGAGAGATTTCGCATATTATTTCTAAAGACAAATTTCATATGATAAAGTTGTGAAGAGATAAAGGAACTGTCAGCTCCAAGCAGCAACTGAGGACATATGGAACTCATAAATCTGTCTTTTCATCGTTTTATCGTTTCTTTGAAATGACCAAGGCATGAAGGAATAGATATGTGATGATTTCGTTTATTTTAAGATTCTATATAAAGAAGTTATGTGTTCCTCAATAAAAGTACTTGAATATTGCTTGCAGTTCAAGATAATGTAATGGCATTTCCAATGAGGTTGTTATCCCCTTATCCAAGAACCAGTAAGCTTCAATCTCCAAAATATGCGAAAACAAGAGTTTCGGTTCCCGGCCTCGCAGCATGCTTTTACAACACTTATGTGCTCCATGGTCAACTTCACCATCACTCTTTTTCCTTCTATGTGACCAAACCTTCAGTGCTAAAGAACTTCAAGTAAGTTACTTAAGGTAGCTGTAATTGCTAGGGACTATGTTAGGTTAGGTTAGTTATGCTATTCTTTTATGGCGTTACGAGCATCAAAATGTTGAATTTGTTCAAGAAATGCAAGTTATAAAGTCAGTCAAGCAGCTTGTTTTCTTCCCTTCCTGCATCTCTTGATTATTGTACTCTACAAATTGTACACTATAGTTTCCTTACTTGGTAGAACACTTGAACTTCGTAAATTCATTGCAAAGCCTATAGTAAAATTTCTCTTGGGCCCTTGGCAACACAAGGGAAATAATGATTGTAAACTTAAGGGTGCACCTCAAAGGGAAACGGTGATATGCCATATGTGAAAGACAACAGGATGGCATAATGTTGAGCAAATATTCTCATAGCCTTCACAGGCGTAAACTTTTTAAGCTATCTTTAACGTTACTTGAGAAGAATCGTGGTTGTATGATTAGTCTATGTTTGTAATTTGTTATTATTCTTTGTGGTACAGGAAGATGGCCTTATCCATTAGGAGCAGTGTGGAAGAGAGTCCATTTGATCCTCCTTCAAATAGCTCGAATGGCAGAACGAGACTGACACGAATTATTTCAGCTATTCAAACCAAGTTGAATGCGAGAATTAACGAGTTAAGGAAAAATCTTCCATTGAAGATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACTGTTATTGGTCAAACAGGTGACTGGGATGTTCTATCTGCTGCATTGGCTGTGGCTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCCCTTTTGAACAAGATTAAAGGCCTAATAACCATGTTCAATTATTGGAAAGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATATGAAATGGATGATATTTTTGGGTTACATAACCTCTTCCATTTATACTTAGAAAATGTAATTCATATCATTTATTAACAATTCAAATTCATTGCTGTATATCTTCAAATTGCATTAACTTGGGTTTATTCTTTTCCAAGTTCTGAGTTCAGAGGATGGAACCTCCAATTCATGGATCTGAAGCCTTGGGACAAACATGGTTGCTGTTTGAAGGATTTCCTAAGAACTGGCGCTTTTTGATTTCCATTGTCTAA

mRNA sequence

TCTCTTTTATTAAATTGGCTAAAAAATGGACTATCCGAGTTCTAAGGTACGGCGCCAAAATCTGCCCCCACGCCTAAGACCGACGATTGATGAAAGAGACGAACAGTTCTTGCAGCTAAACCTCCATGGGAGAATCGTGAAAGATAATCTGACAAGTTGCTTAGGCTCGGATATCGATCTGAAGATGGCCTTATCCATTAGGAGCAGTGTGGAAGAGAGTCCATTTGATCCTCCTTCAAATAGCTCGAATGGCAGAACGAGACTGACACGAATTATTTCAGCTATTCAAACCAAGTTGAATGCGAGAATTAACGAGTTAAGGAAAAATCTTCCATTGAAGATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACTGTTATTGGTCAAACAGGTGACTGGGATGTTCTATCTGCTGCATTGGCTGTGGCTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCCCTTTTGAACAAGATTAAAGGCCTAATAACCATGTTCAATTATTGGAAAGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATATGAAATGGATGATATTTTTGGGTTACATAACCTCTTCCATTTATACTTAGAAAATAGGATGGAACCTCCAATTCATGGATCTGAAGCCTTGGGACAAACATGGTTGCTGTTTGAAGGATTTCCTAAGAACTGGCGCTTTTTGATTTCCATTGTCTAA

Coding sequence (CDS)

ATGGACTATCCGAGTTCTAAGGTACGGCGCCAAAATCTGCCCCCACGCCTAAGACCGACGATTGATGAAAGAGACGAACAGTTCTTGCAGCTAAACCTCCATGGGAGAATCGTGAAAGATAATCTGACAAGTTGCTTAGGCTCGGATATCGATCTGAAGATGGCCTTATCCATTAGGAGCAGTGTGGAAGAGAGTCCATTTGATCCTCCTTCAAATAGCTCGAATGGCAGAACGAGACTGACACGAATTATTTCAGCTATTCAAACCAAGTTGAATGCGAGAATTAACGAGTTAAGGAAAAATCTTCCATTGAAGATACTCTTCTTCTTGGTTGGGTTTTACAGTGCAACTGCATTTGCAACTGTTATTGGTCAAACAGGTGACTGGGATGTTCTATCTGCTGCATTGGCTGTGGCTGTTGTGGAGGGGATTGGGGCCCTCATGTATAGGGCTTCTCTTCCCCTTTTGAACAAGATTAAAGGCCTAATAACCATGTTCAATTATTGGAAAGCTGGACTTTCCATGGGTCTTTTCTTGGATTCTTTTAAATATGAAATGGATGATATTTTTGGGTTACATAACCTCTTCCATTTATACTTAGAAAATAGGATGGAACCTCCAATTCATGGATCTGAAGCCTTGGGACAAACATGGTTGCTGTTTGAAGGATTTCCTAAGAACTGGCGCTTTTTGATTTCCATTGTCTAA

Protein sequence

MDYPSSKVRRQNLPPRLRPTIDERDEQFLQLNLHGRIVKDNLTSCLGSDIDLKMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLENRMEPPIHGSEALGQTWLLFEGFPKNWRFLISIV

Homology

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BLAST of CmaCh17G000410 vs. ExPASy Swiss-Prot
Match: O80813 (Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-23
Identity = 56/110 (50.91%), Postives = 75/110 (68.18%), Query Frame = 0


Query: 76  GRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAA 135
           G TRL RI  A   +L  +IN  RKN P+KI   L+GFY+A A AT++GQTGDWDVL A 
Sbjct: 85  GSTRLGRIAIAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAG 144

Query: 136 LAVAVVEGIGALMYR--ASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFK 184
           + VA +EGIG LMY+  +S     K++  +   N+WKAG+ +GLF+D+FK
Sbjct: 145 IVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFK 194

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BLAST of CmaCh17G000410 vs. ExPASy Swiss-Prot
Match: Q9MUL5 (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.8e-14
Identity = 47/110 (42.73%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 78  TRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALA 137
           TRLT   + I   L+++I     N P+KIL  L+GF+ AT  ATV GQTGDWDVL A + 
Sbjct: 4   TRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVAGIL 63

Query: 138 VAVVEGIGALMYRASLPLLNKIKGL----ITMFNYWKAGLSMGLFLDSFK 184
           VA++E +G  MY        ++  +    +   NY K GL  GLF+D+FK
Sbjct: 64  VAMIEILGNKMYSKKYISKKQVFDISFLSLIGINYIKIGLIFGLFVDAFK 113

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BLAST of CmaCh17G000410 vs. ExPASy Swiss-Prot
Match: Q1XDS2 (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-09
Identity = 36/107 (33.64%), Postives = 62/107 (57.94%), Query Frame = 0


Query: 77  RTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAAL 136
           +TRL+   + +   LN ++      L   ++  L+GF+ +T  +T+ GQTGDW +++A+L
Sbjct: 3   KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 137 AVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFK 184
            VA  E    ++Y +   L  K    I +FN +K G++ GLF+D+FK
Sbjct: 63  IVAATELTSKIVYSSHKQLNIK----INLFNNFKIGITYGLFVDAFK 105

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BLAST of CmaCh17G000410 vs. ExPASy Swiss-Prot
Match: P51214 (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.9e-09
Identity = 35/107 (32.71%), Postives = 60/107 (56.07%), Query Frame = 0


Query: 77  RTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAAL 136
           RT+L+   S     L++R+      L   ++  L+GF+ +T  +T+ GQTGDW +++A+L
Sbjct: 3   RTKLSIFFSYFVQNLSSRLYYSLNELTAGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 137 AVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFK 184
            VA +E +  ++Y        K    I + N  K G++ GLF+D+FK
Sbjct: 63  IVAAIELVSKIVYSNK----KKYGVRINLLNNLKIGITYGLFVDAFK 105

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BLAST of CmaCh17G000410 vs. ExPASy Swiss-Prot
Match: P72983 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-06
Identity = 35/107 (32.71%), Postives = 54/107 (50.47%), Query Frame = 0


Query: 77  RTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAAL 136
           RTRL  I+     +L+       + + L +L FL GF+  TA AT  GQ   WDV+ AA 
Sbjct: 3   RTRLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAF 62

Query: 137 AVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFK 184
            +   E +    YR  + + +    ++ +F   K G+S  LFL++FK
Sbjct: 63  ILLFCELVNRWFYRRGVKMGDLQAEVLNIF---KMGVSYSLFLEAFK 106

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BLAST of CmaCh17G000410 vs. ExPASy TrEMBL
Match: A0A6J1KZB0 (ycf20-like protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498957 PE=3 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.5e-106
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MDYPSSKVRRQNLPPRLRPTIDERDEQFLQLNLHGRIVKDNLTSCLGSDIDLKMALSIRS 60
           MDYPSSKVRRQNLPPRLRPTIDERDEQFLQLNLHGRIVKDNLTSCLGSDIDLKMALSIRS
Sbjct: 1   MDYPSSKVRRQNLPPRLRPTIDERDEQFLQLNLHGRIVKDNLTSCLGSDIDLKMALSIRS 60

Query: 61  SVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFA 120
           SVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFA
Sbjct: 61  SVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFA 120

Query: 121 TVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLD 180
           TVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLD
Sbjct: 121 TVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLD 180

Query: 181 SFKYEMDDIFGLHNLFHLYLEN 203
           SFKYEMDDIFGLHNLFHLYLEN
Sbjct: 181 SFKYEMDDIFGLHNLFHLYLEN 202

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BLAST of CmaCh17G000410 vs. ExPASy TrEMBL
Match: A0A6J1H7K4 (uncharacterized protein LOC111460299 OS=Cucurbita moschata OX=3662 GN=LOC111460299 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.9e-75
Identity = 155/174 (89.08%), Postives = 160/174 (91.95%), Query Frame = 0


Query: 33  LHGRIVKDNLTSCLGSDIDL----KMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQ 92
           LHG++   +L+  +     L    KMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQ
Sbjct: 42  LHGQLHHQSLSFYVTKPSVLKNFKKMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQ 101

Query: 93  TKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALM 152
           TKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALM
Sbjct: 102 TKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALM 161

Query: 153 YRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLEN 203
           YRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLEN
Sbjct: 162 YRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLEN 215

[Close]

BLAST of CmaCh17G000410 vs. ExPASy TrEMBL
Match: A0A6J1L1A0 (uncharacterized protein LOC111498957 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498957 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 6.6e-75
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 53  KMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVG 112
           KMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVG
Sbjct: 66  KMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVG 125

Query: 113 FYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAG 172
           FYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAG
Sbjct: 126 FYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAG 185

Query: 173 LSMGLFLDSFKYEMDDIFGLHNLFHLYLEN 203
           LSMGLFLDSFKYEMDDIFGLHNLFHLYLEN
Sbjct: 186 LSMGLFLDSFKYEMDDIFGLHNLFHLYLEN 215

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BLAST of CmaCh17G000410 vs. ExPASy TrEMBL
Match: A0A1S3CBS0 (ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103499014 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 3.2e-69
Identity = 138/150 (92.00%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 53  KMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVG 112
           KMALSIR SVE SPFDPPS++SNGRTRL RII AIQTKLNARINELRKNLP KILFFLVG
Sbjct: 58  KMALSIRGSVEGSPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPFKILFFLVG 117

Query: 113 FYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAG 172
           FYSATAFATVIGQTGDWD+LSAALAV VVEGIGALMYRASLPLLNKIKGLITMFNYWKAG
Sbjct: 118 FYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKGLITMFNYWKAG 177

Query: 173 LSMGLFLDSFKYEMDDIFGLHNLFHLYLEN 203
           LSMGLFLDSFK+EMDDIFG+HNLFHLYL N
Sbjct: 178 LSMGLFLDSFKFEMDDIFGIHNLFHLYLHN 207

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BLAST of CmaCh17G000410 vs. ExPASy TrEMBL
Match: A0A0A0K9U0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G077990 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 9.3e-69
Identity = 138/150 (92.00%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 53  KMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVG 112
           KMALSIR SVE +PFDPPS++SNGRTRL RII AIQTKLNARINELRKNLPLKILFFLVG
Sbjct: 66  KMALSIRGSVEGNPFDPPSSNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKILFFLVG 125

Query: 113 FYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAG 172
           FYSATAFATVIGQTGDWD+LSAALAV VVEGIGALMYRASLPLLNKIK LITMFNYWKAG
Sbjct: 126 FYSATAFATVIGQTGDWDILSAALAVVVVEGIGALMYRASLPLLNKIKDLITMFNYWKAG 185

Query: 173 LSMGLFLDSFKYEMDDIFGLHNLFHLYLEN 203
           LSMGLFLDSFK+EMDDIFGLHNLFHLYL N
Sbjct: 186 LSMGLFLDSFKFEMDDIFGLHNLFHLYLHN 215

[Close]

BLAST of CmaCh17G000410 vs. NCBI nr
Match: XP_023006120.1 (ycf20-like protein isoform X2 [Cucurbita maxima])

HSP 1 Score: 394.8 bits (1013), Expect = 5.1e-106
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MDYPSSKVRRQNLPPRLRPTIDERDEQFLQLNLHGRIVKDNLTSCLGSDIDLKMALSIRS 60
           MDYPSSKVRRQNLPPRLRPTIDERDEQFLQLNLHGRIVKDNLTSCLGSDIDLKMALSIRS
Sbjct: 1   MDYPSSKVRRQNLPPRLRPTIDERDEQFLQLNLHGRIVKDNLTSCLGSDIDLKMALSIRS 60

Query: 61  SVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFA 120
           SVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFA
Sbjct: 61  SVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFA 120

Query: 121 TVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLD 180
           TVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLD
Sbjct: 121 TVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLD 180

Query: 181 SFKYEMDDIFGLHNLFHLYLEN 203
           SFKYEMDDIFGLHNLFHLYLEN
Sbjct: 181 SFKYEMDDIFGLHNLFHLYLEN 202

[Close]

BLAST of CmaCh17G000410 vs. NCBI nr
Match: XP_023548512.1 (ycf20-like protein isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 393.3 bits (1009), Expect = 1.5e-105
Identity = 201/202 (99.50%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 1   MDYPSSKVRRQNLPPRLRPTIDERDEQFLQLNLHGRIVKDNLTSCLGSDIDLKMALSIRS 60
           MDYPSSKVRRQNLPPRLRPTIDERDEQFLQLNLHGRIVKDNLT CLGSDIDLKMALSIRS
Sbjct: 1   MDYPSSKVRRQNLPPRLRPTIDERDEQFLQLNLHGRIVKDNLTGCLGSDIDLKMALSIRS 60

Query: 61  SVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFA 120
           SVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFA
Sbjct: 61  SVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFA 120

Query: 121 TVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLD 180
           TVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLD
Sbjct: 121 TVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLD 180

Query: 181 SFKYEMDDIFGLHNLFHLYLEN 203
           SFKYEMDDIFGLHNLFHLYLEN
Sbjct: 181 SFKYEMDDIFGLHNLFHLYLEN 202

[Close]

BLAST of CmaCh17G000410 vs. NCBI nr
Match: KAG6574801.1 (Syntaxin-61, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 392.9 bits (1008), Expect = 2.0e-105
Identity = 216/293 (73.72%), Postives = 217/293 (74.06%), Query Frame = 0


Query: 8   VRRQNLPPRLRPTIDERDEQFLQLNLHGRIVKDNLTSCLGSDIDL--------------- 67
           VRRQNLPPRLRPTID RDEQFLQLNLHGRIVKDNLT CLGSDIDL               
Sbjct: 297 VRRQNLPPRLRPTIDARDEQFLQLNLHGRIVKDNLTGCLGSDIDLLLAVQDNVMAFPMRL 356

Query: 68  ----------------------------------------------------------KM 127
                                                                     KM
Sbjct: 357 LSTYPRTSKLQSPKYAKTRVSVPGLAACFYNTYVLHGQLHHQSLSFYVTKPSVLKNFKKM 416

Query: 128 ALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFY 187
           ALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFY
Sbjct: 417 ALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFY 476

Query: 188 SATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLS 228
           SATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLS
Sbjct: 477 SATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLS 536

[Close]

BLAST of CmaCh17G000410 vs. NCBI nr
Match: XP_038875295.1 (uncharacterized protein LOC120067784 isoform X1 [Benincasa hispida])

HSP 1 Score: 292.4 bits (747), Expect = 3.6e-75
Identity = 175/258 (67.83%), Postives = 178/258 (68.99%), Query Frame = 0


Query: 6   SKVRRQNLPPRLRPTIDERDEQFLQLNLHGRIVKDNL-------------------TSCL 65
           SKVR    PP  RP IDERDEQFLQL+LHG  V DNL                   TS L
Sbjct: 2   SKVR----PPCPRPPIDERDEQFLQLDLHGNSVNDNLRVQDNVMAISTRLLSTYPRTSKL 61

Query: 66  ---------GSDIDL---------------------------------KMALSIRSSVEE 125
                    GS   L                                 KMALSIR SVE 
Sbjct: 62  QSPNYAKTRGSVSGLVACFYDTYVLHGQLHHQYCSCYVTKPSVLKNFKKMALSIRGSVEG 121

Query: 126 SPFDPPSNSSNGRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIG 185
           SPFDPPSN+SNGRTRL RII AIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIG
Sbjct: 122 SPFDPPSNNSNGRTRLIRIIQAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIG 181

Query: 186 QTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFKY 203
           QTGDWDVLSAALAV VVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFK+
Sbjct: 182 QTGDWDVLSAALAVVVVEGIGALMYRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFKF 241

[Close]

BLAST of CmaCh17G000410 vs. NCBI nr
Match: XP_022959269.1 (uncharacterized protein LOC111460299 [Cucurbita moschata])

HSP 1 Score: 291.2 bits (744), Expect = 8.0e-75
Identity = 155/174 (89.08%), Postives = 160/174 (91.95%), Query Frame = 0


Query: 33  LHGRIVKDNLTSCLGSDIDL----KMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQ 92
           LHG++   +L+  +     L    KMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQ
Sbjct: 42  LHGQLHHQSLSFYVTKPSVLKNFKKMALSIRSSVEESPFDPPSNSSNGRTRLTRIISAIQ 101

Query: 93  TKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALM 152
           TKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALM
Sbjct: 102 TKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALM 161

Query: 153 YRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLEN 203
           YRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLEN
Sbjct: 162 YRASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFKYEMDDIFGLHNLFHLYLEN 215

[Close]

BLAST of CmaCh17G000410 vs. TAIR 10
Match: AT3G56830.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 167.2 bits (422), Expect = 1.6e-41
Identity = 95/169 (56.21%), Postives = 121/169 (71.60%), Query Frame = 0


Query: 57  SIRSSVEESPFDPPS-NSSNGRTRLTRIISAIQ---TKLNARINELRKNLPLKILFFLVG 116
           +I+SSV    FDP S +SSN  +R  R+I AIQ   +KL  +I E++K+LP K+ F LVG
Sbjct: 57  TIKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIKKDLPKKLFFLLVG 116

Query: 117 FYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAG 176
           FYSATAF+T IGQTGDWDVLSA LAV VVE IGALMYRAS+PL+NK++  ITMFNYWK G
Sbjct: 117 FYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLINKMRSTITMFNYWKTG 176

Query: 177 LSMGLFLDSFKYEMDD----IFGLHNLFHLYLENRMEPPIHGSEALGQT 218
           L++GLFLDSFKYE+ +     F L+ L  + +  + E P   ++ L  T
Sbjct: 177 LALGLFLDSFKYEVYERKFISFCLYALVMVPVNEKCENPFDWTQVLAWT 225

[Close]

BLAST of CmaCh17G000410 vs. TAIR 10
Match: AT3G56830.2 (Protein of unknown function (DUF565) )

HSP 1 Score: 159.1 bits (401), Expect = 4.4e-39
Identity = 86/132 (65.15%), Postives = 105/132 (79.55%), Query Frame = 0


Query: 57  SIRSSVEESPFDPPS-NSSNGRTRLTRIISAIQ---TKLNARINELRKNLPLKILFFLVG 116
           +I+SSV    FDP S +SSN  +R  R+I AIQ   +KL  +I E++K+LP K+ F LVG
Sbjct: 57  TIKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIKKDLPKKLFFLLVG 116

Query: 117 FYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAG 176
           FYSATAF+T IGQTGDWDVLSA LAV VVE IGALMYRAS+PL+NK++  ITMFNYWK G
Sbjct: 117 FYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLINKMRSTITMFNYWKTG 176

Query: 177 LSMGLFLDSFKY 185
           L++GLFLDSFK+
Sbjct: 177 LALGLFLDSFKF 188

[Close]

BLAST of CmaCh17G000410 vs. TAIR 10
Match: AT3G56830.3 (Protein of unknown function (DUF565) )

HSP 1 Score: 159.1 bits (401), Expect = 4.4e-39
Identity = 86/132 (65.15%), Postives = 105/132 (79.55%), Query Frame = 0


Query: 57  SIRSSVEESPFDPPS-NSSNGRTRLTRIISAIQ---TKLNARINELRKNLPLKILFFLVG 116
           +I+SSV    FDP S +SSN  +R  R+I AIQ   +KL  +I E++K+LP K+ F LVG
Sbjct: 57  TIKSSVGGDRFDPASGSSSNNSSRGLRLIKAIQVLRSKLLVKIQEIKKDLPKKLFFLLVG 116

Query: 117 FYSATAFATVIGQTGDWDVLSAALAVAVVEGIGALMYRASLPLLNKIKGLITMFNYWKAG 176
           FYSATAF+T IGQTGDWDVLSA LAV VVE IGALMYRAS+PL+NK++  ITMFNYWK G
Sbjct: 117 FYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLINKMRSTITMFNYWKTG 176

Query: 177 LSMGLFLDSFKY 185
           L++GLFLDSFK+
Sbjct: 177 LALGLFLDSFKF 188

[Close]

BLAST of CmaCh17G000410 vs. TAIR 10
Match: AT1G65420.1 (Protein of unknown function (DUF565) )

HSP 1 Score: 111.7 bits (278), Expect = 8.1e-25
Identity = 56/110 (50.91%), Postives = 75/110 (68.18%), Query Frame = 0


Query: 76  GRTRLTRIISAIQTKLNARINELRKNLPLKILFFLVGFYSATAFATVIGQTGDWDVLSAA 135
           G TRL RI  A   +L  +IN  RKN P+KI   L+GFY+A A AT++GQTGDWDVL A 
Sbjct: 85  GSTRLGRIAIAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAG 144

Query: 136 LAVAVVEGIGALMYR--ASLPLLNKIKGLITMFNYWKAGLSMGLFLDSFK 184
           + VA +EGIG LMY+  +S     K++  +   N+WKAG+ +GLF+D+FK
Sbjct: 145 IVVAAIEGIGMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFK 194

The following BLAST results are available for this feature:

BLAST of CmaCh17G000410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80813	1.1e-23	50.91	Ycf20-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g65420 PE=2 SV=2	[more]
Q9MUL5	4.8e-14	42.73	Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1	[more]
Q1XDS2	2.1e-09	33.64	Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1	[more]
P51214	7.9e-09	32.71	Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1	[more]
P72983	1.3e-06	32.71	Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]

BLAST of CmaCh17G000410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KZB0	2.5e-106	100.00	ycf20-like protein isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498957 PE=3 S...	[more]
A0A6J1H7K4	3.9e-75	89.08	uncharacterized protein LOC111460299 OS=Cucurbita moschata OX=3662 GN=LOC1114602...	[more]
A0A6J1L1A0	6.6e-75	100.00	uncharacterized protein LOC111498957 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3CBS0	3.2e-69	92.00	ycf20-like protein OS=Cucumis melo OX=3656 GN=LOC103499014 PE=3 SV=1	[more]
A0A0A0K9U0	9.3e-69	92.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G077990 PE=3 SV=1	[more]

BLAST of CmaCh17G000410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006120.1	5.1e-106	100.00	ycf20-like protein isoform X2 [Cucurbita maxima]	[more]
XP_023548512.1	1.5e-105	99.50	ycf20-like protein isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KAG6574801.1	2.0e-105	73.72	Syntaxin-61, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038875295.1	3.6e-75	67.83	uncharacterized protein LOC120067784 isoform X1 [Benincasa hispida]	[more]
XP_022959269.1	8.0e-75	89.08	uncharacterized protein LOC111460299 [Cucurbita moschata]	[more]

BLAST of CmaCh17G000410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56830.1	1.6e-41	56.21	Protein of unknown function (DUF565)	[more]
AT3G56830.2	4.4e-39	65.15	Protein of unknown function (DUF565)	[more]
AT3G56830.3	4.4e-39	65.15	Protein of unknown function (DUF565)	[more]
AT1G65420.1	8.1e-25	50.91	Protein of unknown function (DUF565)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 125..183 e-value: 1.4E-16 score: 60.6
IPR007572	Uncharacterised protein family Ycf20	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 45..192
None	No IPR available	PANTHER	PTHR33787:SF3	YCF20-LIKE PROTEIN	coord: 45..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G000410.1	CmaCh17G000410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0009607	response to biotic stimulus
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005516	calmodulin binding