CmaCh17G000110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G000110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	LysM domain-containing protein
Location	Cma_Chr17: 55320 .. 56095 (-)
RNA-Seq Expression	CmaCh17G000110
Synteny	CmaCh17G000110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTGCTCCATTTCTCGAAACCGCCATAACTGACCTCCACCTCCTCTCCCTCTTTTTATACCCAAAAAACCAAATACCAAATTCATCTTCTCCCATGGCTTCCTCGATATCCTGCTACTCTGTTTTCATTTTCATGGCGCTCATGCTCCTCGCCTCTGCGCAATCCGGTCCCTGCGACGACATCTACCTCGTCAGAGAAGGCGAGTCGCTGCACTCTATCAGCGCCAAGTGCGACGATCCTTTCATAGTCGACTACAATCCGCAGATTCAGGATTCCGATGATGTCTTTCCTGGACTACTCATCAAAATTACGCCATCGCTTAACTCCAGGAAGCTCTTCTTCAGGTAGCTCGAATCCCTAATCCGCTTTCGTTTTCTCTCCATTTACGATTCGCTTCTGTAAATTCATCGACGATCATCTCAGAGGATTTCTCTTTTGCCTCTGCCTCGATTTTTCATCTTCTTCTGTATTTGTAAACTTATGAATCGTTTCTGTAAATTGATTGGATCACACTGTGTTCTTTTTAATGTTGCTGTTATTATTACGTACTAAGTAATGATGAAGTTCGTGTTGATTCAATTTTCCAGGAAGCCGAACAGCTACAATCTTCATTAAGTTTTTATTCACCAACTACGATCATCAAGGTTGGAGCCAAATCTGACTTGCATGCCTTCATGTTTTCATCCCGTTTTTTGAATAGTCAAAGAAAGAAACATTAAATGTTGATTATGAAAAAGGAAGAAAGGGGTAACCACAGACATTTTCTATTTTTTTA

mRNA sequence

GTCTGCTCCATTTCTCGAAACCGCCATAACTGACCTCCACCTCCTCTCCCTCTTTTTATACCCAAAAAACCAAATACCAAATTCATCTTCTCCCATGGCTTCCTCGATATCCTGCTACTCTGTTTTCATTTTCATGGCGCTCATGCTCCTCGCCTCTGCGCAATCCGGTCCCTGCGACGACATCTACCTCGTCAGAGAAGGCGAGTCGCTGCACTCTATCAGCGCCAAGTGCGACGATCCTTTCATAGTCGACTACAATCCGCAGATTCAGGATTCCGATGATGTCTTTCCTGGACTACTCATCAAAATTACGCCATCGCTTAACTCCAGGAAGCTCTTCTTCAGGAAGCCGAACAGCTACAATCTTCATTAAGTTTTTATTCACCAACTACGATCATCAAGGTTGGAGCCAAATCTGACTTGCATGCCTTCATGTTTTCATCCCGTTTTTTGAATAGTCAAAGAAAGAAACATTAAATGTTGATTATGAAAAAGGAAGAAAGGGGTAACCACAGACATTTTCTATTTTTTTA

Coding sequence (CDS)

ATGGCTTCCTCGATATCCTGCTACTCTGTTTTCATTTTCATGGCGCTCATGCTCCTCGCCTCTGCGCAATCCGGTCCCTGCGACGACATCTACCTCGTCAGAGAAGGCGAGTCGCTGCACTCTATCAGCGCCAAGTGCGACGATCCTTTCATAGTCGACTACAATCCGCAGATTCAGGATTCCGATGATGTCTTTCCTGGACTACTCATCAAAATTACGCCATCGCTTAACTCCAGGAAGCTCTTCTTCAGGAAGCCGAACAGCTACAATCTTCATTAA

Protein sequence

MASSISCYSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSLNSRKLFFRKPNSYNLH

Homology

[Close]

BLAST of CmaCh17G000110 vs. ExPASy TrEMBL
Match: A0A6J1KYG6 (uncharacterized protein LOC111499354 OS=Cucurbita maxima OX=3661 GN=LOC111499354 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.3e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1   MASSISCYSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 60
           MASSISCYSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD
Sbjct: 41  MASSISCYSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 100

Query: 61  SDDVFPGLLIKITPSLNSRKLFFRKPNSYNLH 93
           SDDVFPGLLIKITPSLNSRKLFFRKPNSYNLH
Sbjct: 101 SDDVFPGLLIKITPSLNSRKLFFRKPNSYNLH 132

[Close]

BLAST of CmaCh17G000110 vs. ExPASy TrEMBL
Match: A0A6J1H7L7 (uncharacterized protein LOC111460313 OS=Cucurbita moschata OX=3662 GN=LOC111460313 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 89/92 (96.74%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1   MASSISCYSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 60
           MASS SC SVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD
Sbjct: 41  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 100

Query: 61  SDDVFPGLLIKITPSLNSRKLFFRKPNSYNLH 93
           SDDVFPGLLIKITPSLNSRKL FRKPNSYNLH
Sbjct: 101 SDDVFPGLLIKITPSLNSRKLLFRKPNSYNLH 132

[Close]

BLAST of CmaCh17G000110 vs. ExPASy TrEMBL
Match: A0A0A0K9P3 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G074605 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 8.2e-21
Identity = 58/79 (73.42%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 6  SCYSVFI-FMALML-LASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDD 65
          S +SVF+  MAL++ +ASA+S PCDDIY+V+EGE+LH+ISAKC DPFIVD NP IQDSDD
Sbjct: 3  SYFSVFVTVMALIIVVASAESRPCDDIYVVKEGETLHTISAKCGDPFIVDNNPHIQDSDD 62

Query: 66 VFPGLLIKITPSL-NSRKL 82
          VFPGLLI+ITP+L NSRKL
Sbjct: 63 VFPGLLIQITPTLINSRKL 81

[Close]

BLAST of CmaCh17G000110 vs. ExPASy TrEMBL
Match: A0A5D3DLK6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00150 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 59/79 (74.68%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 6  SCYSVFI-FMAL-MLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDD 65
          S +SVFI  MAL M++ASA+S PC+DIY+V+EGE+LH+ISAKC DPFIVD NP IQDSDD
Sbjct: 3  SYFSVFITVMALIMVVASAESKPCNDIYVVKEGETLHTISAKCRDPFIVDNNPHIQDSDD 62

Query: 66 VFPGLLIKITPSL-NSRKL 82
          VFPGLLI+ITP+L NSRKL
Sbjct: 63 VFPGLLIQITPTLINSRKL 81

[Close]

BLAST of CmaCh17G000110 vs. ExPASy TrEMBL
Match: A0A3S3Q8L0 (Peptidoglycan-binding LysM domain-containing protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00937500 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.1e-16
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 1   MASSISCYSVFIFMALMLLASAQ--------------SGPCDDIYLVREGESLHSISAKC 60
           +A   SCY  F+ +AL+LLAS +               GPCD+IY+V +GE+LH+IS KC
Sbjct: 15  IADGASCYCAFV-LALLLLASLRENYPSEEPIHGEFTGGPCDEIYVVNDGETLHTISDKC 74

Query: 61  DDPFIVDYNPQIQDSDDVFPGLLIKITPS 76
            DPFIV+ NP IQD DDV+PGL+IKITPS
Sbjct: 75  GDPFIVEQNPHIQDPDDVYPGLVIKITPS 102

[Close]

BLAST of CmaCh17G000110 vs. NCBI nr
Match: XP_023006696.1 (uncharacterized protein LOC111499354 [Cucurbita maxima])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1   MASSISCYSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 60
           MASSISCYSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD
Sbjct: 41  MASSISCYSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 100

Query: 61  SDDVFPGLLIKITPSLNSRKLFFRKPNSYNLH 93
           SDDVFPGLLIKITPSLNSRKLFFRKPNSYNLH
Sbjct: 101 SDDVFPGLLIKITPSLNSRKLFFRKPNSYNLH 132

[Close]

BLAST of CmaCh17G000110 vs. NCBI nr
Match: XP_022959284.1 (uncharacterized protein LOC111460313 [Cucurbita moschata])

HSP 1 Score: 178.7 bits (452), Expect = 2.3e-41
Identity = 89/92 (96.74%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1   MASSISCYSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 60
           MASS SC SVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD
Sbjct: 41  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 100

Query: 61  SDDVFPGLLIKITPSLNSRKLFFRKPNSYNLH 93
           SDDVFPGLLIKITPSLNSRKL FRKPNSYNLH
Sbjct: 101 SDDVFPGLLIKITPSLNSRKLLFRKPNSYNLH 132

[Close]

BLAST of CmaCh17G000110 vs. NCBI nr
Match: KAG7013356.1 (hypothetical protein SDJN02_23520, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.6 bits (405), Expect = 6.4e-36
Identity = 81/84 (96.43%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  MASSISCYSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 60
          MASS SC SVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD
Sbjct: 1  MASSTSCCSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 60

Query: 61 SDDVFPGLLIKITPSLNSRKLFFR 85
          SDDVFPGLLIKITPSLNSRKL FR
Sbjct: 61 SDDVFPGLLIKITPSLNSRKLLFR 84

[Close]

BLAST of CmaCh17G000110 vs. NCBI nr
Match: KAG6574776.1 (hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.3 bits (399), Expect = 3.2e-35
Identity = 80/84 (95.24%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1   MASSISCYSVFIFMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 60
           MASS SC SVFI MALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD
Sbjct: 41  MASSTSCCSVFILMALMLLASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQD 100

Query: 61  SDDVFPGLLIKITPSLNSRKLFFR 85
           SDDVFPGLLIKITPSLNSRKL FR
Sbjct: 101 SDDVFPGLLIKITPSLNSRKLLFR 124

[Close]

BLAST of CmaCh17G000110 vs. NCBI nr
Match: KGN46208.1 (hypothetical protein Csa_005039 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-20
Identity = 58/79 (73.42%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 6  SCYSVFI-FMALML-LASAQSGPCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDD 65
          S +SVF+  MAL++ +ASA+S PCDDIY+V+EGE+LH+ISAKC DPFIVD NP IQDSDD
Sbjct: 3  SYFSVFVTVMALIIVVASAESRPCDDIYVVKEGETLHTISAKCGDPFIVDNNPHIQDSDD 62

Query: 66 VFPGLLIKITPSL-NSRKL 82
          VFPGLLI+ITP+L NSRKL
Sbjct: 63 VFPGLLIQITPTLINSRKL 81

[Close]

BLAST of CmaCh17G000110 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-15
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 9   SVFIFMALMLLASAQSG--------------PCDDIYLVREGESLHSISAKCDDPFIVDY 68
           S  + ++L+LL S +                PC++IY+V EGE+LH+I  KC DPFIV+ 
Sbjct: 16  SAVVLLSLILLLSVRENNASNSIRGSQFSTKPCEEIYIVGEGETLHTIGDKCGDPFIVER 75

Query: 69  NPQIQDSDDVFPGLLIKITPSLNSRKL 82
           NP I D DDVFPGL++KI P   +RKL
Sbjct: 76  NPHIHDPDDVFPGLVLKIAPFYFNRKL 102

[Close]

BLAST of CmaCh17G000110 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 77.4 bits (189), Expect = 6.6e-15
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 27  CDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKITPSL 77
           CD+IY V+EGE+L +IS KC DP+IV+ NP I D DD+FPGLLI+ITPSL
Sbjct: 60  CDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPSL 109

[Close]

BLAST of CmaCh17G000110 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 26  PCDDIYLVREGESLHSISAKCDDPFIVDYNPQIQDSDDVFPGLLIKI 73
           PC+++Y+V EG++LHSIS KC DPFIV+ NP I D DDVFPGLLIK+
Sbjct: 58  PCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

The following BLAST results are available for this feature:

BLAST of CmaCh17G000110 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G000110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KYG6	5.3e-44	100.00	uncharacterized protein LOC111499354 OS=Cucurbita maxima OX=3661 GN=LOC111499354...	[more]
A0A6J1H7L7	1.1e-41	96.74	uncharacterized protein LOC111460313 OS=Cucurbita moschata OX=3662 GN=LOC1114603...	[more]
A0A0A0K9P3	8.2e-21	73.42	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G074605 PE=4 S...	[more]
A0A5D3DLK6	1.4e-20	74.68	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A3S3Q8L0	6.1e-16	53.93	Peptidoglycan-binding LysM domain-containing protein OS=Cinnamomum micranthum f....	[more]

BLAST of CmaCh17G000110 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023006696.1	1.1e-43	100.00	uncharacterized protein LOC111499354 [Cucurbita maxima]	[more]
XP_022959284.1	2.3e-41	96.74	uncharacterized protein LOC111460313 [Cucurbita moschata]	[more]
KAG7013356.1	6.4e-36	96.43	hypothetical protein SDJN02_23520, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6574776.1	3.2e-35	95.24	hypothetical protein SDJN03_25415, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN46208.1	1.7e-20	73.42	hypothetical protein Csa_005039 [Cucumis sativus]	[more]

BLAST of CmaCh17G000110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62150.1	1.3e-15	45.98	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	6.6e-15	68.00	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	1.5e-14	68.09	peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 21..80 e-value: 3.6E-6 score: 28.4
None	No IPR available	PANTHER	PTHR33648	EMBRYO SAC 1	coord: 2..81
None	No IPR available	PANTHER	PTHR33648:SF23	LYSM DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 2..81
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 30..72 e-value: 1.78726E-4 score: 33.9981

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G000110.1	CmaCh17G000110.1	mRNA