CmaCh17G000090 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G000090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr17: 51689 .. 54413 (-)
RNA-Seq Expression	CmaCh17G000090
Synteny	CmaCh17G000090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACTCCAGAAGGTACCCGATTCGCGTACTCCTCATACTCGCGGCCAAAAAACTGTCTCAGGAAGTACTCTTCATATGGAATTCGTTCAGCAAAGAATTGCCAAACCACAACAACAAATCCAATTGTTGAAATGGGATTACAGAGCATGATTTGAGTGCCAACTGCCCACACAAGGAAACCGCTGTATCCAGGATGACGAATAAATCTATAGACTCCATAAGTAATCAGCTTGTGATGGTCCTCATGATAGATCTTAATCAGATGTGTAAAAGACCGACCTGCAGTTACGATCGCCAGTTTACGTACTGTTTCTCCAACTACAACCATTGCAAGGCCTGTCTGACTAACCCACCAGTATTCCTTAAGACCGGGACACAACACAATTTCAACAAAGTACTCTAAGAAACATAACATCATTGCCAACAGATAGTTTTTGCTTATCAGAAGGGACTTTAGAGTTACGTTGGATTTCCCATGAATTCCAACTGCTAACATATATTCAGAACTGTGAAAGAAGATGATTGCAAATATCATCTGAGACAACTGTCTGCATGCTGTGTAATTGAATACTTCTGTCATGTTTTGTCAACCCACAGTATCGGCTACTGCACTAAAGTTTGCAAGGGTTATAAGATCTTAGTTCAGATCTGAAAATGATGCAGAGCCATATAACATCAACACAGAGAAATCCTCATGTACAAAACCCTGAAGATCCTTTATGCACATCTAAAAAGGAAAAATATGTTAAACCAGGTTTGTATAACGGAATCCAGGATGAATTTGATAAATCACAAGAACTTTATACACCATGCAAACAAATTTTACTAATGAAAGGTTAGCAAAAAAAGTTTTCAGAAGCTCCAACATTATACTAGCAGGTATGTGCTGCATTAACTGCATCTTTTTTGAACGTTTCTGAGTGTCACATACCTGGAAGACCTTTAAAATGTCATGAGGGATACGAGAAAAAAAAAAAAAAAAACAAGTTTCACAGCTACTTGGGAAGATCGTGATAGAAACCAGAAAGCTAAAATAGTATTGAAAGATGCGAATGCAATAACTCCACTCTTGAGTATTCTTACGTCAGTTCTCTGCTTTCCTCTCCTCCCATTCACTCTATTTACAACGAACTCCTTGCTAACAAACCTTTGAGCTAATTACAAATGCACCCTTAATACCTTAACAATCTTTGTAAGGGGGGCAATAGCTAATGACGAAGTATAAAGTACAAGGGAGCAAGGCATCTATAATGCATAATTTAAATAATCTAAAGAGTGAACAACAGTTCCAAGAAATAGCATATCTCTGAAATAAACAAGAAGTTCAGGGAATTGGGAAAGCTGCTGATGAAATGAAAAGTATGAAAAGCATGAAAAGTTAACTAGAGTGTCTGTCAAAAATAAACTTCTTGTGTAATATTAGTTACAACAAAACTTTTACCCAACCTAAAAATCTACACTCCATCTCCATGTGCAAAGAAGAAATCCTAAAACATTCCATGGAGCATAAGAGAAAATGCTCCAATTTAGATTAATTGCAAAAGGTGTGTAACTATAGAATTCTTTTGCTGCAGCACCAGTTTGCTGCATCCGATCTTCCTTTTTCAACCACCATCTCCAAATGTCTAACTTGTCAAAGGAAGAAGAAGAAGAAGAAAATTCTAGTTTCTTTTCAGCGATAACATTTCCAAAAGAATCTTGTGTCAAACTAAACCATAAAATTGAAACCATGCCCCCAAAAGATAGTAATAAAGTTCTGTTTTGTTGATCAATCAAGTATCCGCCACTAAATTGGCCATGGAACAACAATGTTGTTAACTGTCCCTTTTTCTTTGCGAAACACAATCCAATTTGAGCATCTCTATGACATCTTAACGGGTGTATTTGAAGCTTCACAGAAAATGGTCCATAAGGAGACAATAATCTTATTAGGAATTTAAAATTTTACCACTCCATACCACTTCTATCAATTCCTTCTCAAGAAGTTGACTTAGTTATACAAATACATGCATCTCATTCCCAAATCATCCATCATTCAAGGCTTCTCATTCTCATTCTCATTCCTAAGGTCTCGATAACCATTTAGTTTTTGGCTTTTGGTTTCCAATTTTCGAAACTTAAGTTGGTTCCTCATAGTCTTTACAATAGTTTTCATCTTTTGTAAGGAAAAATCAAAATACATTTCAAGAAGGCAAAAAATCTTAGTCTGCTCAAATTTTTCCCTTAAACGAATTAAAGCTATAAGAAAACAACACCAACTTCTCCATGCAAACTTGGCCTTCATTCTGCATCTTTCTAGTAGTTCAATATACAATCTGAATTCATTCACTAACAAATCGAAAATAAGGAAGGAGATGAAGAAAAACACCATAATCATTGCAAAATAAAAGAAAATGCATTACTTACTGATCCTTGAAAGAAGTTTGGGTCCTTGCTCGTACTCGAAGAGATTCGACTTCGCTGAGATCGTTCAGAAATGCGTCGTTCGTGGTCGGGTCTATACTCTGTAGCCGCCTGTGGTGGACATGGTGGGGAGTACCGGGGGATCTGCCGTTGTCGCTCTTGCTGCGAGACCGGGGGTTGGGTGCGCCACAAATCTGCAAGCCTGGAGTTACCTGGTTCGTCGGTTAGAAGGGAATTGGCGCGAGACCGTGGGAACGGGGTTCGTTGCGACTGGTCTGGCGCTGCCGTCGTGGGTCACAGAGTTAAGCCCAGTCTGTAA

mRNA sequence

ATGGCACTCCAGAAGGTACCCGATTCGCGTACTCCTCATACTCGCGGCCAAAAAACTGTCTCAGGAAAAATGCGTCGTTCGTGGTCGGGTCTATACTCTGTAGCCGCCTGTGGTGGACATGGTGGGGAGTACCGGGGGATCTGCCGTTGTCGCTCTTGCTGCGAGACCGGGGGTTGGGTGCGCCACAAATCTGCAAGCCTGGAGTTACCTGGTTCGTCGGTTAGAAGGGAATTGGCGCGAGACCGTGGGAACGGGGTTCGTTGCGACTGGTCTGGCGCTGCCGTCGTGGGTCACAGAGTTAAGCCCAGTCTGTAA

Coding sequence (CDS)

ATGGCACTCCAGAAGGTACCCGATTCGCGTACTCCTCATACTCGCGGCCAAAAAACTGTCTCAGGAAAAATGCGTCGTTCGTGGTCGGGTCTATACTCTGTAGCCGCCTGTGGTGGACATGGTGGGGAGTACCGGGGGATCTGCCGTTGTCGCTCTTGCTGCGAGACCGGGGGTTGGGTGCGCCACAAATCTGCAAGCCTGGAGTTACCTGGTTCGTCGGTTAGAAGGGAATTGGCGCGAGACCGTGGGAACGGGGTTCGTTGCGACTGGTCTGGCGCTGCCGTCGTGGGTCACAGAGTTAAGCCCAGTCTGTAA

Protein sequence

MALQKVPDSRTPHTRGQKTVSGKMRRSWSGLYSVAACGGHGGEYRGICRCRSCCETGGWVRHKSASLELPGSSVRRELARDRGNGVRCDWSGAAVVGHRVKPSL

Homology

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BLAST of CmaCh17G000090 vs. NCBI nr
Match: KAG6574774.1 (SPX domain-containing membrane protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.8 bits (408), Expect = 3.2e-36
Identity = 75/81 (92.59%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 24  MRRSWSGLYSVAACGGHGGEYRGICRCRSCCETGGWVRHKSASLELPGSSVRRELARDRG 83
           MRRSWSGL SVAACG  GGE+RGICRCRSCCETGGWVRHKS SLELPGSSVRRELARDRG
Sbjct: 1   MRRSWSGLNSVAACGRRGGEHRGICRCRSCCETGGWVRHKSTSLELPGSSVRRELARDRG 60

Query: 84  NGVRCDWSGAAVVGHRVKPSL 105
           N VRCDWSGAAVVGHRVKPSL
Sbjct: 61  NRVRCDWSGAAVVGHRVKPSL 81

The following BLAST results are available for this feature:

BLAST of CmaCh17G000090 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G000090 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G000090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574774.1	3.2e-36	92.59	SPX domain-containing membrane protein, partial [Cucurbita argyrosperma subsp. s...	[more]

BLAST of CmaCh17G000090 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G000090.1	CmaCh17G000090.1	mRNA