CmaCh17G000080 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G000080
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr17: 51666 .. 53773 (+)
RNA-Seq Expression	CmaCh17G000080
Synteny	CmaCh17G000080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGGCCTGGGCTTTTGGTTTACAGACTGGGCTTAACTCTGTGACCCACGACGGCAGCGCCAGACCAGTCGCAACGAACCCCGTTCCCACGGTCTCGCGCCAATTCCCTTCTAACCGACGAACCAGGTAACTCCAGGCTTGCAGATTTGTGGCGCACCCAACCCCCGGTCTCGCAGCAAGAGCGACAACGGCAGATCCCCCGGTACTCCCCACCATGTCCACCACAGGCGGCTACAGAGTATAGACCCGACCACGAACGACGCATTTCTGAACGATCTCAGCGAAGTCGAATCTCTTCGAGTACGAGCAAGGACCCAAACTTCTTTCAAGGATCAGTAAGTAATGCATTTTCTTTTATTTTGCAATGATTATGGTGTTTTTCTTCATCTCCTTCCTTATTTTCGATTTGTTAGTGAATGAATTCAGATTGTATATTGAACTACTAGAAAGATGCAGAATGAAGGCCAAGTTTGCATGGAGAAGTTGGTGTTGTTTTCTTATAGCTTTAATTCGTTTAAGGGAAAAATTTGAGCAGACTAAGATTTTTTGCCTTCTTGAAATGTATTTTGATTTTTCCTTACAAAAGATGAAAACTATTGTAAAGACTATGAGGAACCAACTTAAGTTTCGAAAATTGGAAACCAAAAGCCAAAAACTAAATGGTTATCGAGACCTTAGGAATGAGAATGAGAATGAGAAGCCTTGAATGATGGATGATTTGGGAATGAGATGCATGTATTTGTATAACTAAGTCAACTTCTTGAGAAGGAATTGATAGAAGTGGTATGGAGTGGTAAAATTTTAAATTCCTAATAAGATTATTGTCTCCTTATGGACCATTTTCTGTGAAGCTTCAAATACACCCGTTAAGATGTCATAGAGATGCTCAAATTGGATTGTGTTTCGCAAAGAAAAAGGGACAGTTAACAACATTGTTGTTCCATGGCCAATTTAGTGGCGGATACTTGATTGATCAACAAAACAGAACTTTATTACTATCTTTTGGGGGCATGGTTTCAATTTTATGGTTTAGTTTGACACAAGATTCTTTTGGAAATGTTATCGCTGAAAAGAAACTAGAATTTTCTTCTTCTTCTTCTTCCTTTGACAAGTTAGACATTTGGAGATGGTGGTTGAAAAAGGAAGATCGGATGCAGCAAACTGGTGCTGCAGCAAAAGAATTCTATAGTTACACACCTTTTGCAATTAATCTAAATTGGAGCATTTTCTCTTATGCTCCATGGAATGTTTTAGGATTTCTTCTTTGCACATGGAGATGGAGTGTAGATTTTTAGGTTGGGTAAAAGTTTTGTTGTAACTAATATTACACAAGAAGTTTATTTTTGACAGACACTCTAGTTAACTTTTCATGCTTTTCATACTTTTCATTTCATCAGCAGCTTTCCCAATTCCCTGAACTTCTTGTTTATTTCAGAGATATGCTATTTCTTGGAACTGTTGTTCACTCTTTAGATTATTTAAATTATGCATTATAGATGCCTTGCTCCCTTGTACTTTATACTTCGTCATTAGCTATTGCCCCCCTTACAAAGATTGTTAAGGTATTAAGGGTGCATTTGTAATTAGCTCAAAGGTTTGTTAGCAAGGAGTTCGTTGTAAATAGAGTGAATGGGAGGAGAGGAAAGCAGAGAACTGACGTAAGAATACTCAAGAGTGGAGTTATTGCATTCGCATCTTTCAATACTATTTTAGCTTTCTGGTTTCTATCACGATCTTCCCAAGTAGCTGTGAAACTTGTTTTTTTTTTTTTTTTTCTCGTATCCCTCATGACATTTTAAAGGTCTTCCAGGTATGTGACACTCAGAAACGTTCAAAAAAGATGCAGTTAATGCAGCACATACCTGCTAGTATAATGTTGGAGCTTCTGAAAACTTTTTTTGCTAACCTTTCATTAGTAAAATTTGTTTGCATGGTGTATAAAGTTCTTGTGATTTATCAAATTCATCCTGGATTCCGTTATACAAACCTGGTTTAACATATTTTTCCTTTTTAGATGTGCATAAAGGATCTTCAGGGTTTTGTACATGAGGATTTCTCTGTGTTGATGTTATATGGCTCTGCATCATTTTCAGATCTGAACTAA

mRNA sequence

ATGTCTGGGCCTGGGCTTTTGGTTTACAGACTGGGCTTAACTCTGCTTGCAGATTTGTGGCGCACCCAACCCCCGGTCTCGCAGCAAGAGCGACAACGGCAGATCCCCCGGTACTCCCCACCATGTCCACCACAGGCGGCTACAGAGTATAGACCCGACCACGAACGACGCATTTCTGAACGATCTCAGCGAAGTCGAATCTCTTCGAGTACGAGCAAGGACCCAAACTTCTTTCAAGGATCAATGTGCATAAAGGATCTTCAGGGTTTTGTACATGAGGATTTCTCTGTGTTGATGTTATATGGCTCTGCATCATTTTCAGATCTGAACTAA

Coding sequence (CDS)

ATGTCTGGGCCTGGGCTTTTGGTTTACAGACTGGGCTTAACTCTGCTTGCAGATTTGTGGCGCACCCAACCCCCGGTCTCGCAGCAAGAGCGACAACGGCAGATCCCCCGGTACTCCCCACCATGTCCACCACAGGCGGCTACAGAGTATAGACCCGACCACGAACGACGCATTTCTGAACGATCTCAGCGAAGTCGAATCTCTTCGAGTACGAGCAAGGACCCAAACTTCTTTCAAGGATCAATGTGCATAAAGGATCTTCAGGGTTTTGTACATGAGGATTTCTCTGTGTTGATGTTATATGGCTCTGCATCATTTTCAGATCTGAACTAA

Protein sequence

MSGPGLLVYRLGLTLLADLWRTQPPVSQQERQRQIPRYSPPCPPQAATEYRPDHERRISERSQRSRISSSTSKDPNFFQGSMCIKDLQGFVHEDFSVLMLYGSASFSDLN

Homology

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BLAST of CmaCh17G000080 vs. NCBI nr
Match: KAG7013354.1 (hypothetical protein SDJN02_23518, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-06
Identity = 35/74 (47.30%), Postives = 43/74 (58.11%), Query Frame = 0


Query: 44  PQAATEYRPDHERRISERSQRSRISSSTSKDPNFFQGS-------MCIKDLQGFVHEDFS 103
           P  + ++  +   R          + +T+ DP  F  +       MCIKDLQGFVHEDFS
Sbjct: 21  PTVSRQFPSNRRTRFVAHPTPGLAARATTADPTVFPTTSTTGGYRMCIKDLQGFVHEDFS 80

Query: 104 VLMLYGSASFSDLN 111
           VLMLYGSASFSDLN
Sbjct: 81  VLMLYGSASFSDLN 94

The following BLAST results are available for this feature:

BLAST of CmaCh17G000080 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G000080 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh17G000080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013354.1	3.7e-06	47.30	hypothetical protein SDJN02_23518, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmaCh17G000080 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G000080.1	CmaCh17G000080.1	mRNA