CmaCh17G000060 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh17G000060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ubiquitin-related modifier 1 homolog
Location	Cma_Chr17: 31411 .. 33072 (+)
RNA-Seq Expression	CmaCh17G000060
Synteny	CmaCh17G000060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACTAAAATTTGGTTCAACCCGAATTGAATAGTTTGTATCATACGGTGAGACTGAAGTTACTTCTAAAATTCCCCCATTAAGGATCTGATCTTTGTCTTCTCTCTAGGGTTTTATTTTAGGGTTCCGCGGAAGCAAATTGAGAATGCAACTCACACTTGAATTTGGGTAATTCTCTCTCTCTCTCTCTTTCTCAAATTTTACTTGGAAGGAAAATTCCCCAGTTTGTTTAGAGAGATACAGGGGAAAAATTTCTGATCCTGGAACACAGAGTTTCAATTCCTTCTGTTTCTGGGAAAGTTGGAAATCAGAAGAAATATCTTGTTCGATCGTGTTTTTATGTTTTTTCGCAGCTTATAAACTTGAATTTCTGTGTCGTTGTCTATCCATAAAGATCGATTGTTTTCTGAATTTGAGCAAACTCTTGAGTTCGTGAATTCTGTGTATTAATGAGGTATCGTGATACTGATGTTGGGGAATATTTCTCTTGGGCTGGCTGAAGGGAAGAAAAGATCGACTATTGGATATAATTGTTTGTGTTTAGTTGTCAATCATTCAAAATTTGCACCTATTCTTCGGGATATTGGGGCCAAAACTATAGTTTTGCTTGAATATCCAGTTGCTTCACTGCCTCCATATTGTTTTCATTCTGGTTTTGTTCGTTCGATTACCATTGTTTTTTAAGCATATGCCAGTTTGTAAATTACACTCCGTTCTTTCGTTAGATTATATATACATTGGAAATCGATAACCTGTTCTTTATCATATTCAACTTTTATGTGTTCAGTGGAACTTTTTGGCTGGATTGTACCATTTATAATTGCATATATTGTTTCAACAATTCATCAGTGTGTTGTTTACAGTGATTGCAGATTTTGACTCCATCAGTACCCTCTATTTCCTCATCCCCACCAAAACCAAAAGAGAAGGAAAATAAATAATGTGGCAGGATCTTTAATAGCCTATTGTCTGCAATATTAGAAATTATCCTTCCATATGCTTCTAGGTTGCATTTTTATTGTGTCTTTTATGAATGTAAAAGGTGGAACGGAAAAGATATCAATGTAGTATGTCATTCTTTAGGCTTTAATTTTTCAGCTAGTGTTTATATGTTAAACATGACAGTAATATTAACTATTACATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGTGAAGATCCACGATGTCAGCGTTGATCCTGAAAATGGAGCGGGAACGGTAAATTAAAATTTTTCAACAATTTAATGAAAGATCGAGTCAATATCAGATTCATATTTTCGTGCTTCATTCCTCTGTTTATCAAGCAAGTCTAATGTTTCTTTTAAAACGGTTCTCAGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGAAGTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACTGTGTAAGTTGTAAAAGAAACATCTCATTAGTTTATCAATTTTCTTTTTCAAAGATTGTGAATGAGAGGATGAACGTGAAAGTGGGTGAAGAATTGTGATGGTTTCAAATGTGGTTCCTGCAGAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGTGGGCAGCTTGATACACCATTGGAAGAGAAAGACGTGGTGGTGTTCATATCCACCCTGCATGGAGGCTAA

mRNA sequence

AAACTAAAATTTGGTTCAACCCGAATTGAATAGTTTGTATCATACGGTGAGACTGAAGTTACTTCTAAAATTCCCCCATTAAGGATCTGATCTTTGTCTTCTCTCTAGGGTTTTATTTTAGGGTTCCGCGGAAGCAAATTGAGAATGCAACTCACACTTGAATTTGGTGATTGCAGATTTTGACTCCATCAGTACCCTCTATTTCCTCATCCCCACCAAAACCAAAAGAGAAGGAAAATAAATAATGTGGCAGGATCTTTAATAGCCTATTGTCTGCAATATTAGAAATTATCCTTCCATATGCTTCTAGGTTGCATTTTTATTGTGTCTTTTATGAATGTAAAAGGTGGAACGGAAAAGATATCAATGTAGTATGTCATTCTTTAGGCTTTAATTTTTCAGCTAGTGTTTATATGTTAAACATGACAGTAATATTAACTATTACATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGTGAAGATCCACGATGTCAGCGTTGATCCTGAAAATGGAGCGGGAACGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGAAGTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACTGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGTGGGCAGCTTGATACACCATTGGAAGAGAAAGACGTGGTGGTGTTCATATCCACCCTGCATGGAGGCTAA

Coding sequence (CDS)

ATGTTAAACATGACAGTAATATTAACTATTACATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGTGAAGATCCACGATGTCAGCGTTGATCCTGAAAATGGAGCGGGAACGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGAAGTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACTGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGTGGGCAGCTTGATACACCATTGGAAGAGAAAGACGTGGTGGTGTTCATATCCACCCTGCATGGAGGCTAA

Protein sequence

MLNMTVILTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG

Homology

[Close]

BLAST of CmaCh17G000060 vs. ExPASy Swiss-Prot
Match: B3H7G2 (Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=URM1-2 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 5.0e-40
Identity = 77/96 (80.21%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 9   TITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRP 68
           T+   GGLELLCDSVKIH V+++  N +  L MKDLLSWVR+NLIKERPEMFMKGDTVRP
Sbjct: 4   TLEFGGGLELLCDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDTVRP 63

Query: 69  GVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           GVLVLVNDCDWELSGQLDT LE+KDV+VFISTLHGG
Sbjct: 64  GVLVLVNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

[Close]

BLAST of CmaCh17G000060 vs. ExPASy Swiss-Prot
Match: A0MDQ1 (Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=URM1-1 PE=3 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 5.6e-39
Identity = 79/99 (79.80%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 8   LTITCSGGLELLCDSVKIHDVSVDPENGAGT--LIMKDLLSWVRSNLIKERPEMFMKGDT 67
           LT+   GGLELLCDS KIH V+VD  NGA +    MK LLSWVR+NLIKERPEMFMKGDT
Sbjct: 3   LTLEFGGGLELLCDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDT 62

Query: 68  VRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           VRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct: 63  VRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101

[Close]

BLAST of CmaCh17G000060 vs. ExPASy Swiss-Prot
Match: Q7GBC8 (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=URM1 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.9e-35
Identity = 69/98 (70.41%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 8   LTITCSGGLELLCD-SVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTV 67
           LT+   GGLELL + S K+H V + P +G G ++MK LL+WV+SNLIKERPEMF+KGD+V
Sbjct: 3   LTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSV 62

Query: 68  RPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           RPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  RPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

[Close]

BLAST of CmaCh17G000060 vs. ExPASy Swiss-Prot
Match: Q0D6M1 (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=URM1 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.9e-35
Identity = 69/98 (70.41%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 8   LTITCSGGLELLCD-SVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTV 67
           LT+   GGLELL + S K+H V + P +G G ++MK LL+WV+SNLIKERPEMF+KGD+V
Sbjct: 3   LTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSV 62

Query: 68  RPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           RPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  RPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

[Close]

BLAST of CmaCh17G000060 vs. ExPASy Swiss-Prot
Match: B6SXH2 (Ubiquitin-related modifier 1 homolog OS=Zea mays OX=4577 GN=URM1 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-32
Identity = 69/99 (69.70%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 8   LTITCSGGLELLCD-SVKIHDVSV-DPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDT 67
           LT+   GGLELL + S K+H V V  P++G G + MK LLSWV+ NLIKERPEMF+K D+
Sbjct: 3   LTLEFGGGLELLLENSTKVHKVEVTTPKDGQGKVTMKFLLSWVKENLIKERPEMFLKADS 62

Query: 68  VRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  VRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 101

[Close]

BLAST of CmaCh17G000060 vs. ExPASy TrEMBL
Match: A0A6J1CUK8 (Ubiquitin-related modifier 1 homolog OS=Momordica charantia OX=3673 GN=LOC111014914 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.6e-47
Identity = 91/103 (88.35%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 2   LNMTVILTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFM 61
           ++MT++L   CSGGLELLC+SVKIH+VS+DPENGAG LIMKDLLSWVR+NLIKERPEMFM
Sbjct: 1   MDMTIVLAFKCSGGLELLCNSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 60

Query: 62  KGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           KGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 103

[Close]

BLAST of CmaCh17G000060 vs. ExPASy TrEMBL
Match: A0A6J1KZL7 (Ubiquitin-related modifier 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111499031 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.8e-47
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 8   LTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           LT+   GGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR
Sbjct: 3   LTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR 62

Query: 68  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 99

[Close]

BLAST of CmaCh17G000060 vs. ExPASy TrEMBL
Match: A0A6J1H5M9 (Ubiquitin-related modifier 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111460265 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.8e-47
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 8   LTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           LT+   GGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR
Sbjct: 3   LTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR 62

Query: 68  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 99

[Close]

BLAST of CmaCh17G000060 vs. ExPASy TrEMBL
Match: A0A6J1KX86 (Ubiquitin-related modifier 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111499031 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.3e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 13  SGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLV 72
           SGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLV
Sbjct: 2   SGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLV 61

Query: 73  LVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           LVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Sbjct: 62  LVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 93

[Close]

BLAST of CmaCh17G000060 vs. ExPASy TrEMBL
Match: A0A6J1H480 (Ubiquitin-related modifier 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111460265 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.3e-46
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 13  SGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLV 72
           SGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLV
Sbjct: 2   SGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLV 61

Query: 73  LVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           LVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Sbjct: 62  LVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 93

[Close]

BLAST of CmaCh17G000060 vs. NCBI nr
Match: KAG7013351.1 (Ubiquitin-related modifier 1-like 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.1 bits (505), Expect = 1.8e-47
Identity = 100/116 (86.21%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 1   MLNMTVILTITCSGGLELLCDSVKIHDVSVDPENGAGT------------LIMKDLLSWV 60
           MLNMTVILT  CSGGLELLCDS KIHDV VDPENGAGT            LIMKDLLSWV
Sbjct: 1   MLNMTVILTFKCSGGLELLCDSEKIHDVRVDPENGAGTQKSNAFFQNGSQLIMKDLLSWV 60

Query: 61  RSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           RSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Sbjct: 61  RSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 116

[Close]

BLAST of CmaCh17G000060 vs. NCBI nr
Match: XP_038876424.1 (ubiquitin-related modifier 1 homolog 2 isoform X2 [Benincasa hispida])

HSP 1 Score: 199.1 bits (505), Expect = 1.8e-47
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MLNMTVILTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMF 60
           M++MTVILT  CSGGLELLCDSVKIH+VS+DPENG G LIMKDLLSWVR+NLIKERPEMF
Sbjct: 1   MMDMTVILTFKCSGGLELLCDSVKIHNVSIDPENGVGKLIMKDLLSWVRTNLIKERPEMF 60

Query: 61  MKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           MKGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 61  MKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 104

[Close]

BLAST of CmaCh17G000060 vs. NCBI nr
Match: XP_022145475.1 (ubiquitin-related modifier 1 homolog 2 isoform X1 [Momordica charantia])

HSP 1 Score: 197.6 bits (501), Expect = 5.3e-47
Identity = 91/103 (88.35%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 2   LNMTVILTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFM 61
           ++MT++L   CSGGLELLC+SVKIH+VS+DPENGAG LIMKDLLSWVR+NLIKERPEMFM
Sbjct: 1   MDMTIVLAFKCSGGLELLCNSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 60

Query: 62  KGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           KGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 103

[Close]

BLAST of CmaCh17G000060 vs. NCBI nr
Match: KAG7026033.1 (Ubiquitin-related modifier 1-like 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.8 bits (499), Expect = 9.1e-47
Identity = 93/104 (89.42%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MLNMTVILTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMF 60
           M++MTVIL   CSGGLELLCDSVKIH+VS++PENGAG L+MKDLLSWVRSNLIKERPEMF
Sbjct: 1   MVDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMF 60

Query: 61  MKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           MKGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 61  MKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 104

[Close]

BLAST of CmaCh17G000060 vs. NCBI nr
Match: XP_022959205.1 (ubiquitin-related modifier 1 homolog 2-like isoform X1 [Cucurbita moschata] >XP_023006240.1 ubiquitin-related modifier 1 homolog 2-like isoform X1 [Cucurbita maxima] >XP_023547849.1 ubiquitin-related modifier 1 homolog 2-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG6574773.1 Ubiquitin-related modifier 1-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195.7 bits (496), Expect = 2.0e-46
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 8   LTITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR 67
           LT+   GGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR
Sbjct: 3   LTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVR 62

Query: 68  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 99

[Close]

BLAST of CmaCh17G000060 vs. TAIR 10
Match: AT3G61113.1 (Ubiquitin related modifier 1 )

HSP 1 Score: 164.9 bits (416), Expect = 3.6e-41
Identity = 77/96 (80.21%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 9   TITCSGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRP 68
           T+   GGLELLCDSVKIH V+++  N +  L MKDLLSWVR+NLIKERPEMFMKGDTVRP
Sbjct: 4   TLEFGGGLELLCDSVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDTVRP 63

Query: 69  GVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           GVLVLVNDCDWELSGQLDT LE+KDV+VFISTLHGG
Sbjct: 64  GVLVLVNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

[Close]

BLAST of CmaCh17G000060 vs. TAIR 10
Match: AT2G45695.1 (Ubiquitin related modifier 1 )

HSP 1 Score: 161.4 bits (407), Expect = 3.9e-40
Identity = 79/99 (79.80%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 8   LTITCSGGLELLCDSVKIHDVSVDPENGAGT--LIMKDLLSWVRSNLIKERPEMFMKGDT 67
           LT+   GGLELLCDS KIH V+VD  NGA +    MK LLSWVR+NLIKERPEMFMKGDT
Sbjct: 3   LTLEFGGGLELLCDSEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDT 62

Query: 68  VRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 105
           VRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct: 63  VRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101

The following BLAST results are available for this feature:

BLAST of CmaCh17G000060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3H7G2	5.0e-40	80.21	Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=URM1-2...	[more]
A0MDQ1	5.6e-39	79.80	Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=URM1-1...	[more]
Q7GBC8	4.9e-35	70.41	Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=U...	[more]
Q0D6M1	4.9e-35	70.41	Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
B6SXH2	1.3e-32	69.70	Ubiquitin-related modifier 1 homolog OS=Zea mays OX=4577 GN=URM1 PE=3 SV=1	[more]

BLAST of CmaCh17G000060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CUK8	2.6e-47	88.35	Ubiquitin-related modifier 1 homolog OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1KZL7	9.8e-47	95.88	Ubiquitin-related modifier 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111499031...	[more]
A0A6J1H5M9	9.8e-47	95.88	Ubiquitin-related modifier 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114602...	[more]
A0A6J1KX86	1.3e-46	100.00	Ubiquitin-related modifier 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111499031...	[more]
A0A6J1H480	1.3e-46	100.00	Ubiquitin-related modifier 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114602...	[more]

BLAST of CmaCh17G000060 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013351.1	1.8e-47	86.21	Ubiquitin-related modifier 1-like 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038876424.1	1.8e-47	90.38	ubiquitin-related modifier 1 homolog 2 isoform X2 [Benincasa hispida]	[more]
XP_022145475.1	5.3e-47	88.35	ubiquitin-related modifier 1 homolog 2 isoform X1 [Momordica charantia]	[more]
KAG7026033.1	9.1e-47	89.42	Ubiquitin-related modifier 1-like 2, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022959205.1	2.0e-46	95.88	ubiquitin-related modifier 1 homolog 2-like isoform X1 [Cucurbita moschata] >XP_...	[more]

BLAST of CmaCh17G000060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61113.1	3.6e-41	80.21	Ubiquitin related modifier 1	[more]
AT2G45695.1	3.9e-40	79.80	Ubiquitin related modifier 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015221	Ubiquitin-related modifier 1	PIRSF	PIRSF037379	Urm1	coord: 4..104 e-value: 3.3E-36 score: 121.5
IPR015221	Ubiquitin-related modifier 1	PFAM	PF09138	Urm1	coord: 9..104 e-value: 2.9E-33 score: 114.1
IPR015221	Ubiquitin-related modifier 1	PANTHER	PTHR14986	RURM1 PROTEIN	coord: 4..104
IPR015221	Ubiquitin-related modifier 1	HAMAP	MF_03048	Urm1	coord: 8..104 score: 32.76947
IPR015221	Ubiquitin-related modifier 1	CDD	cd01764	Ubl_Urm1	coord: 8..104 e-value: 2.23502E-46 score: 142.28
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 3..104 e-value: 3.2E-35 score: 122.4
IPR016155	Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp	SUPERFAMILY	54285	MoaD/ThiS	coord: 7..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G000060.1	CmaCh17G000060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032447	protein urmylation
biological_process	GO:0034227	tRNA thio-modification
biological_process	GO:0002098	tRNA wobble uridine modification
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0031386	protein tag