CmaCh16G012810 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G012810
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	C2H2-type domain-containing protein
Location	Cma_Chr16: 9732860 .. 9733531 (-)
RNA-Seq Expression	CmaCh16G012810
Synteny	CmaCh16G012810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAATACCAATGCCAATGCCGATATCAATACCGTCCCAGAGTCGACCTCTCCCGACCAACGTCATGGCGGAGAAAGGTCTCCAATGGCGGTTTCTCCACCACCCGCTAGCATCGACGACAATAACCCTACTCCTCCCGTCATCAACCTCTCGTCCGTAGCACCTGCCCCAGAAAGAGGTACAACAGGCGACGTGGGAGTGTCGTCATCGTCGTCACATGGTCATGTGGGAGGCGGTTCGAACACGGAGGTAGGGAAGAAGAGAGGGCGAGGAGACGGAGGAGAGCAGCAGCAGCAAGTGAAGGCTGCAAAGAAGAAGGGAGAGCTAACGGAGGTCCCAAAAGGTGACCCAAAATGTGCGACTTGTAATAAAGTGTTCAAATCGTGGAAAGCACTTTTTGGACACTTGAGGTCTCACCCGGAACGGACATACCGTGGGGCTCTTCCGCCGCCAACCGCCGCCGAGCTCGATATCCGCCACTGTCAGCAGCAGTTCGCTTCCACTTTGCTGACGGTGGCTCAGGGAGTGGCGGCGTCGAGAAGAGGGTTGGATATTGATCTCAACCAGCCCTCCGCTGCTGAGGAGAGTGGGTCGCCTGAGAAGAGCGGCGGCGTGGGGTTCGATCTCAACGTGGAGCAGCCGCCGGAGAGTGAGAACGATGAGTGA

mRNA sequence

ATGGAGAAGAATACCAATGCCAATGCCGATATCAATACCGTCCCAGAGTCGACCTCTCCCGACCAACGTCATGGCGGAGAAAGGTCTCCAATGGCGGTTTCTCCACCACCCGCTAGCATCGACGACAATAACCCTACTCCTCCCGTCATCAACCTCTCGTCCGTAGCACCTGCCCCAGAAAGAGGTACAACAGGCGACGTGGGAGTGTCGTCATCGTCGTCACATGGTCATGTGGGAGGCGGTTCGAACACGGAGGTAGGGAAGAAGAGAGGGCGAGGAGACGGAGGAGAGCAGCAGCAGCAAGTGAAGGCTGCAAAGAAGAAGGGAGAGCTAACGGAGGTCCCAAAAGGTGACCCAAAATGTGCGACTTGTAATAAAGTGTTCAAATCGTGGAAAGCACTTTTTGGACACTTGAGGTCTCACCCGGAACGGACATACCGTGGGGCTCTTCCGCCGCCAACCGCCGCCGAGCTCGATATCCGCCACTGTCAGCAGCAGTTCGCTTCCACTTTGCTGACGGTGGCTCAGGGAGTGGCGGCGTCGAGAAGAGGGTTGGATATTGATCTCAACCAGCCCTCCGCTGCTGAGGAGAGTGGGTCGCCTGAGAAGAGCGGCGGCGTGGGGTTCGATCTCAACGTGGAGCAGCCGCCGGAGAGTGAGAACGATGAGTGA

Coding sequence (CDS)

ATGGAGAAGAATACCAATGCCAATGCCGATATCAATACCGTCCCAGAGTCGACCTCTCCCGACCAACGTCATGGCGGAGAAAGGTCTCCAATGGCGGTTTCTCCACCACCCGCTAGCATCGACGACAATAACCCTACTCCTCCCGTCATCAACCTCTCGTCCGTAGCACCTGCCCCAGAAAGAGGTACAACAGGCGACGTGGGAGTGTCGTCATCGTCGTCACATGGTCATGTGGGAGGCGGTTCGAACACGGAGGTAGGGAAGAAGAGAGGGCGAGGAGACGGAGGAGAGCAGCAGCAGCAAGTGAAGGCTGCAAAGAAGAAGGGAGAGCTAACGGAGGTCCCAAAAGGTGACCCAAAATGTGCGACTTGTAATAAAGTGTTCAAATCGTGGAAAGCACTTTTTGGACACTTGAGGTCTCACCCGGAACGGACATACCGTGGGGCTCTTCCGCCGCCAACCGCCGCCGAGCTCGATATCCGCCACTGTCAGCAGCAGTTCGCTTCCACTTTGCTGACGGTGGCTCAGGGAGTGGCGGCGTCGAGAAGAGGGTTGGATATTGATCTCAACCAGCCCTCCGCTGCTGAGGAGAGTGGGTCGCCTGAGAAGAGCGGCGGCGTGGGGTTCGATCTCAACGTGGAGCAGCCGCCGGAGAGTGAGAACGATGAGTGA

Protein sequence

MEKNTNANADINTVPESTSPDQRHGGERSPMAVSPPPASIDDNNPTPPVINLSSVAPAPERGTTGDVGVSSSSSHGHVGGGSNTEVGKKRGRGDGGEQQQQVKAAKKKGELTEVPKGDPKCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRHCQQQFASTLLTVAQGVAASRRGLDIDLNQPSAAEESGSPEKSGGVGFDLNVEQPPESENDE

Homology

[Close]

BLAST of CmaCh16G012810 vs. ExPASy Swiss-Prot
Match: O65499 (Zinc finger protein ZAT3 OS=Arabidopsis thaliana OX=3702 GN=ZAT3 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.6e-06
Identity = 30/70 (42.86%), Postives = 35/70 (50.00%), Query Frame = 0


Query: 88  KKRGRGDGGEQQQQVKAAKK----KGELTEVPKGDPKCATCNKVFKSWKALFGHLRSHPE 147
           KKR +          K+A K    K      PK    C  C + F SWKALFGH+R HPE
Sbjct: 42  KKRTKTVASSSSSSPKSASKPKYTKKPDPNAPKITRPCTECGRKFWSWKALFGHMRCHPE 101

Query: 148 RTYRGALPPP 154
           R +RG  PPP
Sbjct: 102 RQWRGINPPP 111

[Close]

BLAST of CmaCh16G012810 vs. ExPASy Swiss-Prot
Match: Q9SIJ0 (Zinc finger protein ZAT2 OS=Arabidopsis thaliana OX=3702 GN=ZAT2 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.0e-05
Identity = 28/74 (37.84%), Postives = 36/74 (48.65%), Query Frame = 0


Query: 121 CATCNKVFKSWKALFGHLRSHPERTYRGALPP------------PTAAELDIRHCQQQFA 180
           C  C K F S KALFGH+R HPER +RG  PP             +++  D    +   A
Sbjct: 67  CTECGKQFGSLKALFGHMRCHPERQWRGINPPSNFKRRINSNAASSSSSWDPSEEEHNIA 126

Query: 181 STLLTVAQGVAASR 183
           S LL +A G   +R
Sbjct: 127 SCLLMMANGDVPTR 140

[Close]

BLAST of CmaCh16G012810 vs. TAIR 10
Match: AT4G35610.1 (zinc finger (C2H2 type) family protein )

HSP 1 Score: 72.0 bits (175), Expect = 6.8e-13
Identity = 62/160 (38.75%), Postives = 77/160 (48.12%), Query Frame = 0


Query: 79  GGGSNTEVGKKRGR----------GDGGEQQQQVKAAKKKGELTEVPKGDPKCATCNKVF 138
           G GS    GKK+ R          GDG  + +  K  KK  ELT  PKG P C  C + F
Sbjct: 91  GSGSG---GKKKSRPRISTQTDDEGDGLGEGEAKKPKKKAKELTHPPKGPPVCHICGRGF 150

Query: 139 KSWKALFGHLRSHPERTYRGALPPPT----AAELDIRHCQQQFASTLLTV----AQGVAA 198
            SWKA+FGH+R+H +R Y+G LPPPT    A    I   +  F  T+ TV    + GVA 
Sbjct: 151 GSWKAVFGHMRAHRDRNYQGFLPPPTFSAGAERFVIPGLRSAF--TIATVGGGSSGGVAV 210

Query: 199 SRRGLDIDLNQPSAAEESGSPEKSGGVGFDLNVEQPPESE 221
             R    D +     +  GS E   G G DLNVE   + E
Sbjct: 211 GGRSSG-DFSGSGGGDAPGS-EGGRGSGIDLNVEPVEQVE 243

[Close]

BLAST of CmaCh16G012810 vs. TAIR 10
Match: AT4G35700.1 (zinc finger (C2H2 type) family protein )

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-10
Identity = 71/219 (32.42%), Postives = 94/219 (42.92%), Query Frame = 0


Query: 50  INLSSVAPAPERGTTGDVGVSSSSSHGHVGGGSNTEVGKKR-------------GRGDGG 109
           ++ + +  A  +  TG+   S+S +    G     +VGK R               G   
Sbjct: 58  VSAAKLIVAAAKEATGNTEQSASGTGDVSGTPEIIKVGKPRVLLEALAEASGCTPIGVTT 117

Query: 110 EQQQQVKAAKKKG--ELTEVPKGDPKCATCNKVFKSWKALFGHLRSHPERTYRGALPPPT 169
            + + VK  +KKG  +LT +P+G P C  C K F SWKA+FGHLR H +R Y G LPPPT
Sbjct: 118 TEGEVVKKPRKKGSTQLTHLPQGPPMCNVCGKGFASWKAVFGHLRQHKDRGYLGFLPPPT 177

Query: 170 AAELDIRHCQQQFASTLLTVAQGV-------AASRRGL-----------------DIDLN 224
               +        AST   VA  +       A+S  GL                  IDLN
Sbjct: 178 FNAAEEGFGGVATASTGGAVATAISVGEVPTASSAGGLATASSDGEGLVSSIGRARIDLN 237

[Close]

BLAST of CmaCh16G012810 vs. TAIR 10
Match: AT4G35280.1 (C2H2-like zinc finger protein )

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-07
Identity = 30/70 (42.86%), Postives = 35/70 (50.00%), Query Frame = 0


Query: 88  KKRGRGDGGEQQQQVKAAKK----KGELTEVPKGDPKCATCNKVFKSWKALFGHLRSHPE 147
           KKR +          K+A K    K      PK    C  C + F SWKALFGH+R HPE
Sbjct: 42  KKRTKTVASSSSSSPKSASKPKYTKKPDPNAPKITRPCTECGRKFWSWKALFGHMRCHPE 101

Query: 148 RTYRGALPPP 154
           R +RG  PPP
Sbjct: 102 RQWRGINPPP 111

[Close]

BLAST of CmaCh16G012810 vs. TAIR 10
Match: AT2G26940.1 (C2H2-type zinc finger family protein )

HSP 1 Score: 51.6 bits (122), Expect = 9.4e-07
Identity = 22/66 (33.33%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 97  EQQQQVKAAKKKGELTEVPKGDPKCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAA 156
           E+++++  A+     T+V +G  +C  C K F++  +LFGH+R HP+RT++G  PPP + 
Sbjct: 103 EKEKEIDLAR-----TDV-EGKIRCCLCGKEFQTMHSLFGHMRRHPDRTWKGIRPPPPSE 162

Query: 157 ELDIRH 163
           + ++ +
Sbjct: 163 KFNLSY 162

[Close]

BLAST of CmaCh16G012810 vs. TAIR 10
Match: AT2G17180.1 (C2H2-like zinc finger protein )

HSP 1 Score: 50.4 bits (119), Expect = 2.1e-06
Identity = 28/74 (37.84%), Postives = 36/74 (48.65%), Query Frame = 0


Query: 121 CATCNKVFKSWKALFGHLRSHPERTYRGALPP------------PTAAELDIRHCQQQFA 180
           C  C K F S KALFGH+R HPER +RG  PP             +++  D    +   A
Sbjct: 67  CTECGKQFGSLKALFGHMRCHPERQWRGINPPSNFKRRINSNAASSSSSWDPSEEEHNIA 126

Query: 181 STLLTVAQGVAASR 183
           S LL +A G   +R
Sbjct: 127 SCLLMMANGDVPTR 140

The following BLAST results are available for this feature:

BLAST of CmaCh16G012810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65499	4.6e-06	42.86	Zinc finger protein ZAT3 OS=Arabidopsis thaliana OX=3702 GN=ZAT3 PE=1 SV=1	[more]
Q9SIJ0	3.0e-05	37.84	Zinc finger protein ZAT2 OS=Arabidopsis thaliana OX=3702 GN=ZAT2 PE=1 SV=1	[more]

BLAST of CmaCh16G012810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35610.1	6.8e-13	38.75	zinc finger (C2H2 type) family protein	[more]
AT4G35700.1	4.1e-10	32.42	zinc finger (C2H2 type) family protein	[more]
AT4G35280.1	3.2e-07	42.86	C2H2-like zinc finger protein	[more]
AT2G26940.1	9.4e-07	33.33	C2H2-type zinc finger family protein	[more]
AT2G17180.1	2.1e-06	37.84	C2H2-like zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13912	zf-C2H2_6	coord: 120..143 e-value: 8.1E-8 score: 32.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..115
None	No IPR available	PANTHER	PTHR47591:SF4	TRANSCRIPTION REGULATORY PROTEIN SNF2-LIKE	coord: 4..222
None	No IPR available	PANTHER	PTHR47591	ZINC FINGER PROTEIN ZAT2-RELATED	coord: 4..222
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 121..141
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 119..141 score: 8.745844

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G012810.1	CmaCh16G012810.1	mRNA