CmaCh16G012550 (gene) Cucurbita maxima (Rimu) v1.1

BLAST of CmaCh16G012550 vs. ExPASy Swiss-Prot
Match: P18616 (DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana OX=3702 GN=NRPB1 PE=1 SV=3)

HSP 1 Score: 3197.5 bits (8289), Expect = 0.0e+00
Identity = 1616/1849 (87.40%), Postives = 1732/1849 (93.67%), Query Frame = 0

Query: 1    MDLRFPYSPAEVAKVQMVQFGILGPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MD RFP+SPAEV+KV++VQFGIL PDEIRQMSV+ +EH ETTE+GKPKV GLSD RLGTI
Sbjct: 1    MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60

Query: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEDDPK 120
            DRK+KCETC ANMAECPGHFG+LELAKPM+H+GFMKTVL+IMR VCFNCSKIL DE++ K
Sbjct: 61   DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 121  FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEI-DVQGQDPDQPVKKGRGGCGAQQPKIS 180
            FKQAM+IKNPKN+L+KILDACKNKTKC+GGD+I DVQ    D+PVKK RGGCGAQQPK++
Sbjct: 121  FKQAMKIKNPKNRLKKILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSRGGCGAQQPKLT 180

Query: 181  IDGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYA 240
            I+GMKM+AEYK QRKKND+ +QLPEP ERKQTL A+RVL VLKRISD DC+LLG NPK+A
Sbjct: 181  IEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA 240

Query: 241  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 300
            RPDWMIL+VLPIPPPPVRPSVMMD +SRSEDDLTHQLAMIIRHNENL+RQE+NG+PAHII
Sbjct: 241  RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 300

Query: 301  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
            SEF QLLQFHIATYFDNELPG PRATQ+SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301  SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360

Query: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 420
            RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELV+YGPHPPPGKTGAKYII
Sbjct: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII 420

Query: 421  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 480
            RDDGQRLDLRYLKKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRI+IMPYS
Sbjct: 421  RDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS 480

Query: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
Sbjct: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540

Query: 541  SLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPTILKPQPLWTGKQVFNLIIPKQI 600
            +LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIPKQI
Sbjct: 541  TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 600

Query: 601  NLTRTSAWHSESETGFITPGDTFVRIEKGELLTGTLCKKALGSSNGSLIHVIWEEVGPDA 660
            NL R SAWH+++ETGFITPGDT VRIE+GELL GTLCKK LG+SNGSL+HVIWEEVGPDA
Sbjct: 601  NLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDA 660

Query: 661  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERS 720
            ARKFLGHTQWLVNYWLLQN F+IGIGDTIAD++TMEKINETIS AK  VK+LI++ Q + 
Sbjct: 661  ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKE 720

Query: 721  LEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 780
            L+PEPGRTM D+FEN+VNQVLNKARDDAGSSAQKSL+E+NNLKAMVTAGSKGSFINISQM
Sbjct: 721  LDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM 780

Query: 781  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
            TACVGQQNVEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781  TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840

Query: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900

Query: 901  KLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRY 960
            KLDSLKMKK EF+R F+YE +DENW P Y+  EH+EDLK IRE R+VF+AE  KLE DR+
Sbjct: 901  KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRF 960

Query: 961  QLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVV 1020
            QLGTEIAT G+++WP+PVN+KR I NAQKTFKID R+ SDMHP+EIV+A+DKLQERL VV
Sbjct: 961  QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV 1020

Query: 1021 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAP 1080
            PG+D LSVEAQKNATLFFNILLRST ASKRVL+EY+L+REAFEWVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP 1080

Query: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140

Query: 1141 KPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDIDFVKSYYEMPDEE 1200
             PEA+K+KE AKTVQCALEYTTLRSVTQATEVWYDPDPMSTII+ED +FV+SYYEMPDE+
Sbjct: 1141 TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED 1200

Query: 1201 IAPEKISPWLLRVELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
            ++P+KISPWLLR+ELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1201 VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI 1260

Query: 1261 MNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDESEGFK 1320
            MNDE PKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK  + ++FDE  GFK
Sbjct: 1261 MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK 1320

Query: 1321 PEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
               EWMLDTEGVNLLAV+CHEDVD +RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1321 TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1380

Query: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1440
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA YAETD
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD 1440

Query: 1441 HLRGVTENIMLGQLAPIGTGGCSLYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGT 1500
             LRGVTENIMLGQLAPIGTG C LYLNDEMLKNAIELQLPSY+DGL+FGMTP+RSP+SGT
Sbjct: 1441 CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGT 1500

Query: 1501 PYHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 1560
            PYHEGMMSP+YLLSPN+RLSP+SDAQFSPYVGGMAFSP+       SSPGYSPSSPGYSP
Sbjct: 1501 PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPS-------SSPGYSPSSPGYSP 1560

Query: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620
            TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620

Query: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1680
            YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA       YSPTSPSYSPT
Sbjct: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA-------YSPTSPSYSPT 1680

Query: 1681 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSY 1740
            SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY PTSPSY
Sbjct: 1681 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSY 1740

Query: 1741 NPQSAKYSPSQAYSPSSPRMSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPY 1800
            NPQSAKYSPS AYSPS+ R+SP+SPYSPTSPNYSPTSPSYSPTSP+YSPSSPTYSPSSPY
Sbjct: 1741 NPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPY 1800

Query: 1801 NTGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSNSQYTPQTSDKDDRSNR 1849
            ++G SPD       YSPSAGYSPT PGYSPSS  QYTP   DK D++ +
Sbjct: 1801 SSGASPD-------YSPSAGYSPTLPGYSPSSTGQYTPHEGDKKDKTGK 1828

BLAST of CmaCh16G012550 vs. ExPASy Swiss-Prot
Match: P35084 (DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689 GN=polr2a PE=2 SV=2)

HSP 1 Score: 2145.9 bits (5559), Expect = 0.0e+00
Identity = 1125/1773 (63.45%), Postives = 1377/1773 (77.66%), Query Frame = 0

Query: 5    FPYSPAEVAKVQMVQFGILGPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKL 64
            FP S AE+ KV+ VQFGIL PDEIR MSV ++EH ET E GKPK  GL DP +GTID+  
Sbjct: 5    FPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPETYENGKPKAGGLLDPAMGTIDKTQ 64

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEDDPKFKQA 124
            +C+TC+  MAECPGHFGH+ELAKP+FHIGF+ TVL I+R VC++CSK+L D ++  F+QA
Sbjct: 65   RCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQA 124

Query: 125  MRIKNPKNKLRKILDACKNKTKCE-GGDE-----IDVQGQDPDQPVKKGRGGCGAQQPKI 184
            ++I+N K++L  ++D CKNK  C  GG+E     +    ++ D+PVK   GGCG   PKI
Sbjct: 125  LKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVK--HGGCGNVLPKI 184

Query: 185  SIDGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKY 244
            + + +K++ E+K         +   E +E+K  LSAERVL +LKRI DED + +G+NP +
Sbjct: 185  TKEDLKIIVEFK---------DVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINPDW 244

Query: 245  ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHI 304
            AR DWMI  VLP+PPPPVRPS+MMDTS+R EDDLTH+LA I++ N  L+RQE+NG+PAHI
Sbjct: 245  ARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHI 304

Query: 305  ISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 364
            I+E  Q LQFH+ATY DNE+PGLP+A QRSGRP+KSI  RLK KEGRIRGNLMGKRVDFS
Sbjct: 305  IAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFS 364

Query: 365  ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 424
            ARTVIT DP ++ID++GVP SIALNLTYPETVTP+NI++++EL+  GP   P   GAKYI
Sbjct: 365  ARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHP---GAKYI 424

Query: 425  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 484
            IR+DG R DLR++KK SD HLE GYKVERH+NDGD V+FNRQPSLHKMS+MGHRIK+MPY
Sbjct: 425  IREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPY 484

Query: 485  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 544
            STFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV+E+MMVP+ IVSPQ+NRPVMGIVQ
Sbjct: 485  STFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQ 544

Query: 545  DSLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPTILKPQPLWTGKQVFNLIIPKQ 604
            D+LLG R  TKRD F+ KD+ MNILMW   +DGK+P P ILKP+ LWTGKQ+F+LIIP  
Sbjct: 545  DTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP-D 604

Query: 605  INLTRTSAWHSESETGFITPGDTFVRIEKGELLTGTLCKKALGSSNGSLIHVIWEEVGPD 664
            INL R ++ H++ E    + GDT V IE+GELL G LCK++LG++NGS+IHV+  E G D
Sbjct: 605  INLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHD 664

Query: 665  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQER 724
              R F+  TQ +VN+WL+   F++GIGDTIAD+ATM K+  TIS+AKN+VK LI KAQ +
Sbjct: 665  TCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNK 724

Query: 725  SLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 784
              E +PG++++++FE KVNQVLNKARD AGSSAQ SLSE NNLKAMVTAGSKGSFINISQ
Sbjct: 725  QFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQ 784

Query: 785  MTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 844
            M ACVGQQNVEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG
Sbjct: 785  MMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 844

Query: 845  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 904
            REGLIDTAVKTSETGYIQRRLVKAMED+ +KYD TVRNSLGDVIQF YGEDG+D  ++E+
Sbjct: 845  REGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVEN 904

Query: 905  QKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADR 964
            Q +DSL+    E ER++R++ +  ++   +M P  +E ++     R+  E E +++++DR
Sbjct: 905  QSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERIKSDR 964

Query: 965  YQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKV 1024
              L  EI  +GE +WP+PVNL+RLI NAQK F ID RR SD++P  +V  I+KL  RLK+
Sbjct: 965  SLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKI 1024

Query: 1025 VPGEDPLS---------VEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIE 1084
            +   D             E   NAT+ F+IL+RSTFASKRVL E+RLT +AF WV GEIE
Sbjct: 1025 IATADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIE 1084

Query: 1085 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKR 1144
            S+FLQ+L  PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN+AK+
Sbjct: 1085 SKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQ 1144

Query: 1145 IKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDIDFV 1204
            +KTPSL++YLKP   +  +RAK V+  LEYTTL +VT ATE++YDPDP +TII ED +FV
Sbjct: 1145 VKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFV 1204

Query: 1205 KSYYEMPDEEIAPEKISPWLLRVELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDN 1264
             SY+E+PDEEI    +SPWLLR+EL+R M+ DKKL+MA+I + +  +F   L CIF+DDN
Sbjct: 1205 NSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDN 1264

Query: 1265 AEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKC-GK 1324
            AEKLILRIR++  +  KG   D   +DD FL++IESNML+EM LRGI  I KVF++   K
Sbjct: 1265 AEKLILRIRMVESQETKGTDND---DDDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDK 1324

Query: 1325 VNKFDESEGFKPEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSL 1384
            + K  E+ GF    EW+LDT+GV+LL V+ H DVD  RTTSN ++E+I+VLGIEAVR +L
Sbjct: 1325 IPKVTENGGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNAL 1384

Query: 1385 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1444
            L ELR VISFDGSYVNYRHLAIL D MTYRGHLMAITRHGINR +TGP+MRCSFEETV+I
Sbjct: 1385 LKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEI 1444

Query: 1445 LLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCSLYLNDEMLKNAIELQLPSYIDGLDFG 1504
            L+DAA+++ETD ++GVTENI+LGQL P+GTG   ++LN +M+KNA  + LP         
Sbjct: 1445 LMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPE-------- 1504

Query: 1505 MTPSRSPISGTPYHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSP 1564
              PS      TP   G  +PSY                    G  + +P  +P  +P SP
Sbjct: 1505 --PSNVSYPDTP---GSQTPSY------------------SYGDGSTTPFHNPYDAPLSP 1564

Query: 1565 GYSPSSPGYSPT---SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS 1624
                    +SP+   SPGY+  +  Y  +S  Y P SPTYSP+SP YSPTSP+YSPTSPS
Sbjct: 1565 FNETFRGDFSPSAMNSPGYN-ANKSYG-SSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPS 1624

Query: 1625 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1684
            YSPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPT
Sbjct: 1625 YSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1684

Query: 1685 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1744
            SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP YSP+SPSY
Sbjct: 1685 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSY 1726

Query: 1745 SPTSPSYSPTSPSYNPQSAKYSPSQAYSPSSPR 1759
            SP+SPSYSP+SPSY+P S  ++    Y P++ +
Sbjct: 1745 SPSSPSYSPSSPSYSPSSPTFTNKYNYQPNNKK 1726

BLAST of CmaCh16G012550 vs. ExPASy Swiss-Prot
Match: P11414 (DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=POLR2A PE=1 SV=2)

HSP 1 Score: 2090.5 bits (5415), Expect = 0.0e+00
Identity = 1131/1919 (58.94%), Postives = 1421/1919 (74.05%), Query Frame = 0

Query: 8    SPAEVAKVQMVQFGILGPDEIRQMSVVQ--IEHGETTERGKPKVAGLSDPRLGTIDRKLK 67
            S   +  ++ VQFG+L PDE+++MSV +  I++ ETTE G+PK+ GL DPR G I+R  +
Sbjct: 11   SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70

Query: 68   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEDDPKFKQ-- 127
            C+TC  NM ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+LVD ++PK K   
Sbjct: 71   CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130

Query: 128  AMRIKNPKNKLRKILDACKNKTKCEGGDEIDVQ------GQDPDQPVKKGRGGCGAQQPK 187
            A     PK +L  + D CK K  CEGG+E+D +        D D   +KG GGCG  QP+
Sbjct: 131  AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190

Query: 188  ISIDGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPK 247
            I   G+++ AE+K     N+D +      E+K  LS ERV  + KRISDE+C +LG+ P+
Sbjct: 191  IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 250

Query: 248  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 307
            YARP+WMI+ VLP+PP  VRP+V+M  S+R++DDLTH+LA I++ N  LRR E+NG+ AH
Sbjct: 251  YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310

Query: 308  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 367
            +I+E  +LLQFH+AT  DNELPGLPRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDF
Sbjct: 311  VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370

Query: 368  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 427
            SARTVITPDP ++ID++GVP SIA N+T+ E VTP+NI+RL+ELV  G    P   GAKY
Sbjct: 371  SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKY 430

Query: 428  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 487
            IIRD+G R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 431  IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490

Query: 488  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 547
            +STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQ+NRPVMGIV
Sbjct: 491  WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550

Query: 548  QDSLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPTILKPQPLWTGKQVFNLIIPK 607
            QD+L   RK TKRD F+ +   MN+LM+   +DGK+P P ILKP+PLWTGKQ+F+LIIP 
Sbjct: 551  QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610

Query: 608  QINLTRTSAWHSESETG----FITPGDTFVRIEKGELLTGTLCKKALGSSNGSLIHVIWE 667
             IN  RT + H + E       I+PGDT V +E GEL+ G LCKK+LG+S GSL+H+ + 
Sbjct: 611  HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670

Query: 668  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIK 727
            E+G D  R F  + Q ++N WLL    +IGIGD+IAD+ T + I  TI  AK +V  +I+
Sbjct: 671  EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730

Query: 728  KAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSF 787
            KA    LEP PG T+  +FEN+VN++LN ARD  GSSAQKSLSE NN K+MV +G+KGS 
Sbjct: 731  KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790

Query: 788  INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 847
            INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 791  INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850

Query: 848  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 907
            HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+  
Sbjct: 851  HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910

Query: 908  VWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQK 967
              +E Q L +LK   K FE+ FR+++ +E      +  + V+D+ +    +N  E E ++
Sbjct: 911  ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970

Query: 968  LEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 1027
            +  DR  L   I  TG++   +P NL R+I NAQK F I+ R  SD+HP+++VE + +L 
Sbjct: 971  MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030

Query: 1028 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 1087
            ++L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F 
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090

Query: 1088 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP 1147
            Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150

Query: 1148 SLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDIDFVKSYY 1207
            SL+V+L  ++ +  ERAK + C LE+TTLR VT  T ++YDP+P ST++ ED ++V  YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210

Query: 1208 EMPDEEIAPEKISPWLLRVELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1267
            EMPD ++A  +ISPWLLRVEL+R+ M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270

Query: 1268 ILRIRIMNDEAPKGELTDE---SAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVN 1327
            +LRIRIMN +  K +  +E     +DDVFL+ IESNMLT+M L+GI  I+KV++   + +
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330

Query: 1328 K-----FDESEGFKPEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVR 1387
                    E   FK   EW+L+T+GV+L+ V+  +DVD  RTTSN ++E+  VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390

Query: 1388 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1447
            ++L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450

Query: 1448 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCSLYLNDEMLKNAIELQLPSYIDGL 1507
            VD+L++AA + E+D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ I GL
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGL 1510

Query: 1508 D--------FGMTPSRSPISG-----TPYHEGM--------------------------- 1567
                     FG  P  SP+ G     TP+++G                            
Sbjct: 1511 GAAGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA 1570

Query: 1568 ---------MSPSYLLSPNLRLSPISDAQFSPYVGGM----------AFSPTSSPGYSPS 1627
                      SP++  +P    SP   + + P  GG           A+ P S  GY+P 
Sbjct: 1571 SDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQ 1630

Query: 1628 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1687
            SP YSP+SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSY
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

Query: 1688 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1747
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTS
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750

Query: 1748 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1807
            PSYSPTSPSYSPTSP+YSPTSP+Y+PTSPSYSPTSPSYSPTSP Y+PTSP YSPTSPSYS
Sbjct: 1751 PSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYS 1810

Query: 1808 PTSPSYSPTSPSYNPQSAKYSP-SQAYSPSSPRMSPSSP-YSPTSPNYSPTSPSYSPTSP 1843
            PTSPSYSPTSPSY+P S +Y+P S  Y+PSSP  SPSSP YSPTSP Y+PTSPSYSP+SP
Sbjct: 1811 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSP 1870

BLAST of CmaCh16G012550 vs. ExPASy Swiss-Prot
Match: P08775 (DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus OX=10090 GN=Polr2a PE=1 SV=3)

HSP 1 Score: 2090.5 bits (5415), Expect = 0.0e+00
Identity = 1131/1919 (58.94%), Postives = 1421/1919 (74.05%), Query Frame = 0

Query: 8    SPAEVAKVQMVQFGILGPDEIRQMSVVQ--IEHGETTERGKPKVAGLSDPRLGTIDRKLK 67
            S   +  ++ VQFG+L PDE+++MSV +  I++ ETTE G+PK+ GL DPR G I+R  +
Sbjct: 11   SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70

Query: 68   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEDDPKFKQ-- 127
            C+TC  NM ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+LVD ++PK K   
Sbjct: 71   CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130

Query: 128  AMRIKNPKNKLRKILDACKNKTKCEGGDEIDVQ------GQDPDQPVKKGRGGCGAQQPK 187
            A     PK +L  + D CK K  CEGG+E+D +        D D   +KG GGCG  QP+
Sbjct: 131  AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190

Query: 188  ISIDGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPK 247
            I   G+++ AE+K     N+D +      E+K  LS ERV  + KRISDE+C +LG+ P+
Sbjct: 191  IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 250

Query: 248  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 307
            YARP+WMI+ VLP+PP  VRP+V+M  S+R++DDLTH+LA I++ N  LRR E+NG+ AH
Sbjct: 251  YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310

Query: 308  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 367
            +I+E  +LLQFH+AT  DNELPGLPRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDF
Sbjct: 311  VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370

Query: 368  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 427
            SARTVITPDP ++ID++GVP SIA N+T+ E VTP+NI+RL+ELV  G    P   GAKY
Sbjct: 371  SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKY 430

Query: 428  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 487
            IIRD+G R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 431  IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490

Query: 488  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 547
            +STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQ+NRPVMGIV
Sbjct: 491  WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550

Query: 548  QDSLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPTILKPQPLWTGKQVFNLIIPK 607
            QD+L   RK TKRD F+ +   MN+LM+   +DGK+P P ILKP+PLWTGKQ+F+LIIP 
Sbjct: 551  QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610

Query: 608  QINLTRTSAWHSESETG----FITPGDTFVRIEKGELLTGTLCKKALGSSNGSLIHVIWE 667
             IN  RT + H + E       I+PGDT V +E GEL+ G LCKK+LG+S GSL+H+ + 
Sbjct: 611  HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670

Query: 668  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIK 727
            E+G D  R F  + Q ++N WLL    +IGIGD+IAD+ T + I  TI  AK +V  +I+
Sbjct: 671  EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730

Query: 728  KAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSF 787
            KA    LEP PG T+  +FEN+VN++LN ARD  GSSAQKSLSE NN K+MV +G+KGS 
Sbjct: 731  KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790

Query: 788  INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 847
            INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 791  INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850

Query: 848  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 907
            HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+  
Sbjct: 851  HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910

Query: 908  VWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQK 967
              +E Q L +LK   K FE+ FR+++ +E      +  + V+D+ +    +N  E E ++
Sbjct: 911  ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970

Query: 968  LEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 1027
            +  DR  L   I  TG++   +P NL R+I NAQK F I+ R  SD+HP+++VE + +L 
Sbjct: 971  MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030

Query: 1028 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 1087
            ++L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F 
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090

Query: 1088 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP 1147
            Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150

Query: 1148 SLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDIDFVKSYY 1207
            SL+V+L  ++ +  ERAK + C LE+TTLR VT  T ++YDP+P ST++ ED ++V  YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210

Query: 1208 EMPDEEIAPEKISPWLLRVELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1267
            EMPD ++A  +ISPWLLRVEL+R+ M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270

Query: 1268 ILRIRIMNDEAPKGELTDE---SAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVN 1327
            +LRIRIMN +  K +  +E     +DDVFL+ IESNMLT+M L+GI  I+KV++   + +
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330

Query: 1328 K-----FDESEGFKPEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVR 1387
                    E   FK   EW+L+T+GV+L+ V+  +DVD  RTTSN ++E+  VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390

Query: 1388 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1447
            ++L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450

Query: 1448 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCSLYLNDEMLKNAIELQLPSYIDGL 1507
            VD+L++AA + E+D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ I GL
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGL 1510

Query: 1508 D--------FGMTPSRSPISG-----TPYHEGM--------------------------- 1567
                     FG  P  SP+ G     TP+++G                            
Sbjct: 1511 GAAGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA 1570

Query: 1568 ---------MSPSYLLSPNLRLSPISDAQFSPYVGGM----------AFSPTSSPGYSPS 1627
                      SP++  +P    SP   + + P  GG           A+ P S  GY+P 
Sbjct: 1571 SDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQ 1630

Query: 1628 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1687
            SP YSP+SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSY
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

Query: 1688 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1747
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTS
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750

Query: 1748 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1807
            PSYSPTSPSYSPTSP+YSPTSP+Y+PTSPSYSPTSPSYSPTSP Y+PTSP YSPTSPSYS
Sbjct: 1751 PSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYS 1810

Query: 1808 PTSPSYSPTSPSYNPQSAKYSP-SQAYSPSSPRMSPSSP-YSPTSPNYSPTSPSYSPTSP 1843
            PTSPSYSPTSPSY+P S +Y+P S  Y+PSSP  SPSSP YSPTSP Y+PTSPSYSP+SP
Sbjct: 1811 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSP 1870

BLAST of CmaCh16G012550 vs. ExPASy Swiss-Prot
Match: P24928 (DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE=1 SV=2)

HSP 1 Score: 2088.5 bits (5410), Expect = 0.0e+00
Identity = 1130/1919 (58.88%), Postives = 1420/1919 (74.00%), Query Frame = 0

Query: 8    SPAEVAKVQMVQFGILGPDEIRQMSVVQ--IEHGETTERGKPKVAGLSDPRLGTIDRKLK 67
            S   +  ++ VQFG+L PDE+++MSV +  I++ ETTE G+PK+ GL DPR G I+R  +
Sbjct: 11   SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70

Query: 68   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEDDPKFKQ-- 127
            C+TC  NM ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+LVD ++PK K   
Sbjct: 71   CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130

Query: 128  AMRIKNPKNKLRKILDACKNKTKCEGGDEIDVQ------GQDPDQPVKKGRGGCGAQQPK 187
            A     PK +L  + D CK K  CEGG+E+D +        D D   +KG GGCG  QP+
Sbjct: 131  AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190

Query: 188  ISIDGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPK 247
            I   G+++ AE+K     N+D +      E+K  LS ERV  + KRISDE+C +LG+ P+
Sbjct: 191  IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 250

Query: 248  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 307
            YARP+WMI+ VLP+PP  VRP+V+M  S+R++DDLTH+LA I++ N  LRR E+NG+ AH
Sbjct: 251  YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310

Query: 308  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 367
            +I+E  +LLQFH+AT  DNELPGLPRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDF
Sbjct: 311  VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370

Query: 368  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 427
            SARTVITPDP ++ID++GVP SIA N+T+ E VTP+NI+RL+ELV  G    P   GAKY
Sbjct: 371  SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKY 430

Query: 428  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 487
            IIRD+G R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 431  IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490

Query: 488  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIV 547
            +STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQ+NRPVMGIV
Sbjct: 491  WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550

Query: 548  QDSLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPTILKPQPLWTGKQVFNLIIPK 607
            QD+L   RK TKRD F+ +   MN+LM+   +DGK+P P ILKP+PLWTGKQ+F+LIIP 
Sbjct: 551  QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610

Query: 608  QINLTRTSAWHSESETG----FITPGDTFVRIEKGELLTGTLCKKALGSSNGSLIHVIWE 667
             IN  RT + H + E       I+PGDT V +E GEL+ G LCKK+LG+S GSL+H+ + 
Sbjct: 611  HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670

Query: 668  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIK 727
            E+G D  R F  + Q ++N WLL    +IGIGD+IAD+ T + I  TI  AK +V  +I+
Sbjct: 671  EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730

Query: 728  KAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSF 787
            KA    LEP PG T+  +FEN+VN++LN ARD  GSSAQKSLSE NN K+MV +G+KGS 
Sbjct: 731  KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790

Query: 788  INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 847
            INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 791  INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850

Query: 848  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 907
            HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+  
Sbjct: 851  HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910

Query: 908  VWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQK 967
              +E Q L +LK   K FE+ FR+++ +E      +  + V+D+ +    +N  E E ++
Sbjct: 911  ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970

Query: 968  LEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 1027
            +  DR  L   I  TG++   +P NL R+I NAQK F I+ R  SD+HP+++VE + +L 
Sbjct: 971  MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030

Query: 1028 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 1087
            ++L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F 
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090

Query: 1088 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP 1147
            Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150

Query: 1148 SLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDIDFVKSYY 1207
            SL+V+L  ++ +  ERAK + C LE+TTLR VT  T ++YDP+P ST++ ED ++V  YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210

Query: 1208 EMPDEEIAPEKISPWLLRVELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1267
            EMPD ++A  +ISPWLLRVEL+R+ M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270

Query: 1268 ILRIRIMNDEAPKGELTDE---SAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVN 1327
            +LRIRIMN +  K +  +E     +DDVFL+ IESNMLT+M L+GI  I+KV++   + +
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330

Query: 1328 K-----FDESEGFKPEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVR 1387
                    E   FK   EW+L+T+GV+L+ V+  +DVD  RTTSN ++E+  VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390

Query: 1388 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1447
            ++L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450

Query: 1448 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCSLYLNDEMLKNAIELQLPSYIDGL 1507
            VD+L++AA + E+D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ I GL
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGL 1510

Query: 1508 D--------FGMTPSRSPISG-----TPYHEGM--------------------------- 1567
                     FG  P  SP+ G     TP+++G                            
Sbjct: 1511 GAAGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA 1570

Query: 1568 ---------MSPSYLLSPNLRLSPISDAQFSPYVGGM----------AFSPTSSPGYSPS 1627
                      SP++  +P    SP   + + P  GG           A+ P S  GY+P 
Sbjct: 1571 SDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQ 1630

Query: 1628 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1687
            SP YSP+SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSY
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

Query: 1688 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1747
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTS
Sbjct: 1691 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750

Query: 1748 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1807
            PSYSPTSPSYSPTSP+YSPTSP+Y+PTSPSYSPTSPSYSPTSP Y+PTSP YSPTSPSYS
Sbjct: 1751 PSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYS 1810

Query: 1808 PTSPSYSPTSPSYNPQSAKYSP-SQAYSPSSPRMSPSSP-YSPTSPNYSPTSPSYSPTSP 1843
            PTSPSYSPTSPSY+P S +Y+P S  Y+PSSP  SPSSP YSP SP Y+PTSPSYSP+SP
Sbjct: 1811 PTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPASPKYTPTSPSYSPSSP 1870

BLAST of CmaCh16G012550 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 3197.5 bits (8289), Expect = 0.0e+00
Identity = 1616/1849 (87.40%), Postives = 1732/1849 (93.67%), Query Frame = 0

Query: 1    MDLRFPYSPAEVAKVQMVQFGILGPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MD RFP+SPAEV+KV++VQFGIL PDEIRQMSV+ +EH ETTE+GKPKV GLSD RLGTI
Sbjct: 1    MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60

Query: 61   DRKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEDDPK 120
            DRK+KCETC ANMAECPGHFG+LELAKPM+H+GFMKTVL+IMR VCFNCSKIL DE++ K
Sbjct: 61   DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 121  FKQAMRIKNPKNKLRKILDACKNKTKCEGGDEI-DVQGQDPDQPVKKGRGGCGAQQPKIS 180
            FKQAM+IKNPKN+L+KILDACKNKTKC+GGD+I DVQ    D+PVKK RGGCGAQQPK++
Sbjct: 121  FKQAMKIKNPKNRLKKILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSRGGCGAQQPKLT 180

Query: 181  IDGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYA 240
            I+GMKM+AEYK QRKKND+ +QLPEP ERKQTL A+RVL VLKRISD DC+LLG NPK+A
Sbjct: 181  IEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA 240

Query: 241  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 300
            RPDWMIL+VLPIPPPPVRPSVMMD +SRSEDDLTHQLAMIIRHNENL+RQE+NG+PAHII
Sbjct: 241  RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 300

Query: 301  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
            SEF QLLQFHIATYFDNELPG PRATQ+SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301  SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360

Query: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 420
            RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELV+YGPHPPPGKTGAKYII
Sbjct: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII 420

Query: 421  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 480
            RDDGQRLDLRYLKKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRI+IMPYS
Sbjct: 421  RDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS 480

Query: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540
            TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
Sbjct: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540

Query: 541  SLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPTILKPQPLWTGKQVFNLIIPKQI 600
            +LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIPKQI
Sbjct: 541  TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 600

Query: 601  NLTRTSAWHSESETGFITPGDTFVRIEKGELLTGTLCKKALGSSNGSLIHVIWEEVGPDA 660
            NL R SAWH+++ETGFITPGDT VRIE+GELL GTLCKK LG+SNGSL+HVIWEEVGPDA
Sbjct: 601  NLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDA 660

Query: 661  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERS 720
            ARKFLGHTQWLVNYWLLQN F+IGIGDTIAD++TMEKINETIS AK  VK+LI++ Q + 
Sbjct: 661  ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKE 720

Query: 721  LEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 780
            L+PEPGRTM D+FEN+VNQVLNKARDDAGSSAQKSL+E+NNLKAMVTAGSKGSFINISQM
Sbjct: 721  LDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM 780

Query: 781  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
            TACVGQQNVEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781  TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840

Query: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900

Query: 901  KLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRY 960
            KLDSLKMKK EF+R F+YE +DENW P Y+  EH+EDLK IRE R+VF+AE  KLE DR+
Sbjct: 901  KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRF 960

Query: 961  QLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVV 1020
            QLGTEIAT G+++WP+PVN+KR I NAQKTFKID R+ SDMHP+EIV+A+DKLQERL VV
Sbjct: 961  QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV 1020

Query: 1021 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAP 1080
            PG+D LSVEAQKNATLFFNILLRST ASKRVL+EY+L+REAFEWVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP 1080

Query: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140

Query: 1141 KPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDIDFVKSYYEMPDEE 1200
             PEA+K+KE AKTVQCALEYTTLRSVTQATEVWYDPDPMSTII+ED +FV+SYYEMPDE+
Sbjct: 1141 TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED 1200

Query: 1201 IAPEKISPWLLRVELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
            ++P+KISPWLLR+ELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1201 VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI 1260

Query: 1261 MNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDESEGFK 1320
            MNDE PKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK  + ++FDE  GFK
Sbjct: 1261 MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK 1320

Query: 1321 PEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
               EWMLDTEGVNLLAV+CHEDVD +RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1321 TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1380

Query: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1440
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA YAETD
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD 1440

Query: 1441 HLRGVTENIMLGQLAPIGTGGCSLYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGT 1500
             LRGVTENIMLGQLAPIGTG C LYLNDEMLKNAIELQLPSY+DGL+FGMTP+RSP+SGT
Sbjct: 1441 CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGT 1500

Query: 1501 PYHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 1560
            PYHEGMMSP+YLLSPN+RLSP+SDAQFSPYVGGMAFSP+       SSPGYSPSSPGYSP
Sbjct: 1501 PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPS-------SSPGYSPSSPGYSP 1560

Query: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620
            TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620

Query: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1680
            YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA       YSPTSPSYSPT
Sbjct: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA-------YSPTSPSYSPT 1680

Query: 1681 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSY 1740
            SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY PTSPSY
Sbjct: 1681 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSY 1740

Query: 1741 NPQSAKYSPSQAYSPSSPRMSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPY 1800
            NPQSAKYSPS AYSPS+ R+SP+SPYSPTSPNYSPTSPSYSPTSP+YSPSSPTYSPSSPY
Sbjct: 1741 NPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPY 1800

Query: 1801 NTGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSNSQYTPQTSDKDDRSNR 1849
            ++G SPD       YSPSAGYSPT PGYSPSS  QYTP   DK D++ +
Sbjct: 1801 SSGASPD-------YSPSAGYSPTLPGYSPSSTGQYTPHEGDKKDKTGK 1828

BLAST of CmaCh16G012550 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 710.7 bits (1833), Expect = 3.1e-204
Identity = 495/1471 (33.65%), Postives = 743/1471 (50.51%), Query Frame = 0

Query: 14   KVQMVQFGILGPDEIRQMSVVQIEH-GETTERGKPKVAGLSDPRLGTIDRKLKCETCTAN 73
            K++ + F +L   E+ + + VQ+ + G      KP   GL DPR+G  ++K  C TC  N
Sbjct: 22   KIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGN 81

Query: 74   MAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEDDPKFKQAMR-IKNPK 133
               CPGH+G+L+L  P++++G+   +L I++ +C  CS +L+DE    ++  +R ++NP+
Sbjct: 82   FQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDE--KLYEDHLRKMRNPR 141

Query: 134  N---KLRKILDACKNKTKCEGGDEIDVQGQDP--DQPVKK--GRGGCGAQQPKISIDGMK 193
                K  ++  A   K        I    +    +  VKK   + G G    +  I G +
Sbjct: 142  MEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFGIGISHDRSKIHGGE 201

Query: 194  MVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYARPDWM 253
             + E K+             P+     L    VLG+ KR+SD+DC+LL +     RP+ +
Sbjct: 202  -IDECKSAISHTKQSTAAINPL--TYVLDPNLVLGLFKRMSDKDCELLYI---AYRPENL 261

Query: 254  ILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRR--QERNGSPAHIISEF 313
            I+  + +PP  +RPSVM+     +E+DLT +L  II  N +L +   +   SP ++  + 
Sbjct: 262  IITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM--QV 321

Query: 314  AQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 373
               +Q  +A Y ++E+ G     Q    P+  I  RLK K GR R NL GKRV+F+ RTV
Sbjct: 322  WDTVQIEVARYINSEVRGC--QNQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTV 381

Query: 374  ITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 433
            I+PDP + I E+G+P  +A  LT+PE V+ +NIE+L++ V  GP+  PG    +Y    D
Sbjct: 382  ISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRY---PD 441

Query: 434  GQRLDL--RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 493
            G    L   Y K+ +D  L +G  V+RHL +GD VLFNRQPSLH+MSIM HR +IMP+ T
Sbjct: 442  GSSRTLVGDYRKRIAD-ELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRT 501

Query: 494  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDS 553
             R N SV +PYNADFDGDEMNMHVPQ+ E R E + LM V   + +P+    ++   QD 
Sbjct: 502  LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDF 561

Query: 554  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKI--PAPTILKPQPLWTGKQVFNLI---- 613
            L     IT++DTF  +  F  I  +  D    I  P PTILKP  LWTGKQ+F+++    
Sbjct: 562  LTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSVLLRPN 621

Query: 614  --IPKQINLTRTSAWHSESETGF---ITPGDTFVRIEKGELLTGTLCKKALGSSN-GSLI 673
              I   + L        + E GF   +   D +V     EL++G L K  LG+ N   L 
Sbjct: 622  ASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGKATLGNGNKDGLY 681

Query: 674  HVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEV 733
             ++  +    AA   +     L   W+  + FSIGI D        ++  ++I    ++ 
Sbjct: 682  SILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQC 741

Query: 734  KNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAG 793
               I++    +L+ + G     S E ++  +LN  R+  G +    L   N+   M   G
Sbjct: 742  HRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQCG 801

Query: 794  SKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTP 853
            SKGS INISQM ACVGQQ V G R P GFIDR+LPHF +    P ++GFV NS+  GLT 
Sbjct: 802  SKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLTA 861

Query: 854  QEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGE 913
             EFFFH MGGREGL+DTAVKT+ TGY+ RRL+KA+ED++V YD TVRN+ G ++QF YG+
Sbjct: 862  TEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYGD 921

Query: 914  DGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFE 973
            DGMD   +E +    L      F R+F    + +   P    P       +  E    FE
Sbjct: 922  DGMDPALMEGKDGAPL-----NFNRLF---LKVQATCP----PRSHHTYLSSEELSQKFE 981

Query: 974  AEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEA 1033
             E+  +  D+ ++ T+                                         V++
Sbjct: 982  EEL--VRHDKSRVCTD---------------------------------------AFVKS 1041

Query: 1034 IDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEI 1093
            + +    L V     P              +L +++  + + L+ +          +   
Sbjct: 1042 LREFVSLLGVKSASPP-------------QVLYKASGVTDKQLEVF----------VKIC 1101

Query: 1094 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1153
              R+ +  +  G  IG + AQSIGEP TQMTL TFH+AGV++ N+T GVPR+ EIIN +K
Sbjct: 1102 VFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINASK 1161

Query: 1154 RIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDIDF 1213
             I TP +S  L+     T   A+ V+  +E TTL  V ++ EV       S  I  D   
Sbjct: 1162 NISTPVISAELENPLELTS--ARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDNKI 1221

Query: 1214 VKSYYEMPDEEIAPEKISPWLLRVELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDD 1273
            +         E A   I+PW ++  + +   +           K+N   D+D        
Sbjct: 1222 I---------EEACLSITPWSVKNSILKTPRI-----------KLN---DND-------- 1281

Query: 1274 NAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGK 1333
                    IR+++       + D+S     F      N+L  + + GI  + +V +    
Sbjct: 1282 --------IRVLDTGLDITPVVDKSRAH--FNLHNLKNVLPNIIVNGIKTVERVVV---- 1341

Query: 1334 VNKFDESEGFKPEMEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSL 1393
                D+S+    + +W L  EG NLLAV+    ++ R TTSN+++EV + LGIEA R ++
Sbjct: 1342 AEDMDKSKQIDGKTKWKLFVEGTNLLAVMGTPGINGRTTTSNNVVEVSKTLGIEAARTTI 1353

Query: 1394 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1453
            +DE+  V+   G  ++ RH+ +L D MTYRG ++ I R GI + D   +M+ SFE T D 
Sbjct: 1402 IDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGIQKMDKSVLMQASFERTGDH 1353

Query: 1454 LLDAAVYAETDHLRGVTENIMLGQLAPIGTG 1460
            L  AA   + D++ GVTE +++G    +GTG
Sbjct: 1462 LFSAAASGKVDNIEGVTECVIMGIPMKLGTG 1353

BLAST of CmaCh16G012550 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 679.1 bits (1751), Expect = 1.0e-194
Identity = 492/1490 (33.02%), Postives = 739/1490 (49.60%), Query Frame = 0

Query: 14   KVQMVQFGILGPDEIRQMSVVQIEH-GETTERGKPKVAGLSDPRLGTIDRKLKCETCTAN 73
            K++ + F +L   E+ + + VQ+ + G      KP   GL DPR+G  ++K  C TC  N
Sbjct: 22   KIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGN 81

Query: 74   MAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVC----------FNCSKILVDEDDPKFK 133
               CPGH+G+L+L  P++++G+   +L I++ +C            CS +L+DE    ++
Sbjct: 82   FQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKVTELADYVSLRCSNMLLDE--KLYE 141

Query: 134  QAMR-IKNPKN---KLRKILDACKNKTKCEGGDEIDVQGQDP--DQPVKK--GRGGCGAQ 193
              +R ++NP+    K  ++  A   K        I    +    +  VKK   + G G  
Sbjct: 142  DHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFGIGIS 201

Query: 194  QPKISIDGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGL 253
              +  I G + + E K+             P+     L    VLG+ KR+SD+DC+LL +
Sbjct: 202  HDRSKIHGGE-IDECKSAISHTKQSTAAINPL--TYVLDPNLVLGLFKRMSDKDCELLYI 261

Query: 254  NPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRR--QERN 313
                 RP+ +I+  + +PP  +RPSVM+     +E+DLT +L  II  N +L +   +  
Sbjct: 262  ---AYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPT 321

Query: 314  GSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 373
             SP ++  +    +Q  +A Y ++E+ G     Q    P+  I  RLK K GR R NL G
Sbjct: 322  SSPKNM--QVWDTVQIEVARYINSEVRGC--QNQPEEHPLSGILQRLKGKGGRFRANLSG 381

Query: 374  KRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 433
            KRV+F+ RTVI+PDP + I E+G+P  +A  LT+PE V+ +NIE+L++ V  GP+  PG 
Sbjct: 382  KRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGA 441

Query: 434  TGAKYIIRDDGQRLDL--RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 493
               +Y    DG    L   Y K+ +D  L +G  V+RHL +GD VLFNRQPSLH+MSIM 
Sbjct: 442  RNVRY---PDGSSRTLVGDYRKRIAD-ELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMC 501

Query: 494  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQAN 553
            HR +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E + LM V   + +P+  
Sbjct: 502  HRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNG 561

Query: 554  RPVMGIVQDSLLGCRKITKRDTFITKDVFMNILMWWEDFDGKI--PAPTILKPQPLWTGK 613
              ++   QD L     IT++DTF  +  F  I  +  D    I  P PTILKP  LWTGK
Sbjct: 562  EILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGK 621

Query: 614  QVFNLI------IPKQINLTRTSAWHSESETGF---ITPGDTFVRIEKGELLTGTLCKKA 673
            Q+F+++      I   + L        + E GF   +   D +V     EL++G L K  
Sbjct: 622  QIFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDGWVYFRNSELISGQLGKAT 681

Query: 674  -------LGSSN-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 733
                   LG+ N   L  ++  +    AA   +     L   W+  + FSIGI D     
Sbjct: 682  LALDIFPLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGE 741

Query: 734  ATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSA 793
               ++  ++I    ++    I++    +L+ + G     S E ++  +LN  R+  G + 
Sbjct: 742  ELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKAC 801

Query: 794  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 853
               L   N+   M   GSKGS INISQM ACVGQQ V G R P GFIDR+LPHF +    
Sbjct: 802  MSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKS 861

Query: 854  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 913
            P ++GFV NS+  GLT  EFFFH MGGREGL+DTAVKT+ TGY+ RRL+KA+ED++V YD
Sbjct: 862  PAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYD 921

Query: 914  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLP 973
             TVRN+ G ++QF YG+DGMD   +E +    L      F R+F    + +   P    P
Sbjct: 922  NTVRNASGCILQFTYGDDGMDPALMEGKDGAPL-----NFNRLF---LKVQATCP----P 981

Query: 974  EHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFK 1033
                   +  E    FE E+  +  D+ ++ T+                           
Sbjct: 982  RSHHTYLSSEELSQKFEEEL--VRHDKSRVCTD--------------------------- 1041

Query: 1034 IDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVL 1093
                          V+++ +    L V     P              +L +++  + + L
Sbjct: 1042 ------------AFVKSLREFVSLLGVKSASPP-------------QVLYKASGVTDKQL 1101

Query: 1094 DEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1153
            + +          +     R+ +  +  G  IG + AQSIGEP TQMTL TFH+AGV++ 
Sbjct: 1102 EVF----------VKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASM 1161

Query: 1154 NVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEV 1213
            N+T GVPR+ EIIN +K I TP +S  L+     T   A+ V+  +E TTL  V ++ EV
Sbjct: 1162 NITQGVPRINEIINASKNISTPVISAELENPLELTS--ARWVKGRIEKTTLGQVAESIEV 1221

Query: 1214 WYDPDPMSTIIDEDIDFVKSYYEMPDEEIAPEKISPWLLRVELNREMMVDKKLSMANIAE 1273
                   S  I  D   +         E A   I+PW ++  + +   +           
Sbjct: 1222 LMTSTSASVRIILDNKII---------EEACLSITPWSVKNSILKTPRI----------- 1281

Query: 1274 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEM 1333
            K+N   D+D                IR+++       + D+S     F      N+L  +
Sbjct: 1282 KLN---DND----------------IRVLDTGLDITPVVDKSRAH--FNLHNLKNVLPNI 1341

Query: 1334 ALRGIPDINKVFIKCGKVNKFDE--SEGFKPEMEWMLDTEGVNLLAVICHEDVDARRTTS 1393
             + GI  + +V +        D+  ++   P   W       NLLAV+    ++ R TTS
Sbjct: 1342 IVNGIKTVERVVV----AEDMDKMLAKLIIPCPRWAC----TNLLAVMGTPGINGRTTTS 1368

Query: 1394 NHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI 1453
            N+++EV + LGIEA R +++DE+  V+   G  ++ RH+ +L D MTYRG ++ I R GI
Sbjct: 1402 NNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTGI 1368

Query: 1454 NRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTG 1460
             + D   +M+ SFE T D L  AA   + D++ GVTE +++G    +GTG
Sbjct: 1462 QKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTG 1368

BLAST of CmaCh16G012550 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 448.4 bits (1152), Expect = 2.9e-125
Identity = 452/1761 (25.67%), Postives = 716/1761 (40.66%), Query Frame = 0

Query: 3    LRFPYSPAEVAKVQMVQFGILGPDEIRQMSVVQIEHGETTER-GKPKVAGLSDPRLGTID 62
            L FP   ++V  V+ V+F  +   ++R+ S +++      +  G P   GL D +LG  D
Sbjct: 17   LLFPMGASQV--VESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKD 76

Query: 63   RKLKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEDDPKF 122
             K  C +C      CPGH GH+EL  P++H      +   ++  CF C   +   +D + 
Sbjct: 77   DKQACNSCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVE- 136

Query: 123  KQAMRIK---------------NPKNKLRKILDACK------NKTKCEGGDEID-----V 182
            +   ++K               N   K +   ++C+      +  +CE  D  D     +
Sbjct: 137  RAVSQLKLIIKGDIVSAKQLESNTPTKSKSSDESCESVVTTDSSEECEDSDVEDQRWTSL 196

Query: 183  QGQDPDQPVK-------KGRGGCGAQQPKI------------------------------ 242
            Q  +    +K       K    C    PK+                              
Sbjct: 197  QFAEVTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKLKK 256

Query: 243  --------------SIDGMKMVAE-YKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKR 302
                           ID +  V +  K  R+K+ +     E    K+ L    V  +LK 
Sbjct: 257  STSSVENPDGFDDSGIDALSEVEDGDKETREKSTEVAAEFEEHNSKRDLLPSEVRNILKH 316

Query: 303  I---SDEDCKLLG----LNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQL 362
            +     E C  +G       +        L+ + +PP   RP       S  E   T  L
Sbjct: 317  LWQNEHEFCSFIGDLWQSGSEKIDYSMFFLESVLVPPTKFRPPT-TGGDSVMEHPQTVGL 376

Query: 363  AMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSIC 422
              +I  N  L     N      +    + LQ  +   FD++      AT +S R    IC
Sbjct: 377  NKVIESNNILGNACTNKLDQSKVIFRWRNLQESVNVLFDSK-----TATVQSQRDSSGIC 436

Query: 423  SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIE 482
              L+ KEG  R  +MGKRV+ + R+VI+PDP I ++++G+P   AL LTYPE VTP+N+E
Sbjct: 437  QLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVE 496

Query: 483  RLKELVEYGPHPPPGKT-------GAKYIIRDDGQRLDLRYLKKSSDHHLEL-------- 542
            +L+E +  GP   PG T         K    +  +R   R L  S     EL        
Sbjct: 497  KLREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRAIARKLLSSRGATTELGKTCDINF 556

Query: 543  -GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFDGDE 602
             G  V RH+ DGD VL NRQP+LHK S+M H+++++    T RL+ +  S YNADFDGDE
Sbjct: 557  EGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDE 616

Query: 603  MNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFITKDVF 662
            MN+H PQ   +RAE   ++        P    P+  ++QD ++    +TKRDTF+ KD F
Sbjct: 617  MNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKDHF 676

Query: 663  MNIL-------MWWEDFDGK---------------IPAPTILKPQPLWTGKQVFNLIIPK 722
              +L       M    F G+                  P ILKP PLWTGKQV   ++ +
Sbjct: 677  NQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQ 736

Query: 723  ----------------QINLTRTSAWHSESETGFITP------------GDTFVRIEKGE 782
                             ++  +  +   +  +G +T              +  + I K E
Sbjct: 737  ITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKEIDESWKQNLNEDKLHIRKNE 796

Query: 783  LLTGTLCKKALGSSNGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 842
             + G + K     ++  L+H + E  G +AA   L     L   +L  + F+ G+ D I 
Sbjct: 797  FVCGVIDKAQF--ADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLII 856

Query: 843  DAATMEKINETISAAKNEVKNLIKKA----QERSLEPEPGRTMMD--------------- 902
                 E+  + +   +N  + +++K      +  ++P+  R+ ++               
Sbjct: 857  LKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLD 916

Query: 903  -SFENKVNQVLNK-ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 962
             S  N +NQ  +K   +D  S         N +  M  +G+KGS +N  Q+++ +GQQ++
Sbjct: 917  RSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQQDL 976

Query: 963  EGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 1022
            EGKR+P     +TLP F   D+ P + GF+ + +L GL PQE++FH M GREGL+DTAVK
Sbjct: 977  EGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVK 1036

Query: 1023 TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK 1082
            TS +GY+QR L+K +E + V YD TVR++ G +IQF YGEDG+D                
Sbjct: 1037 TSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDV--------------- 1096

Query: 1083 KEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATT 1142
                  F  +F++     + +L +  ED+                              +
Sbjct: 1097 --HRSSFIEKFKELTINQDMVLQKCSEDM-----------------------------LS 1156

Query: 1143 GENSW--PMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLS 1202
            G +S+   +P++LK+    A+K                 VEA+  + ER+          
Sbjct: 1157 GASSYISDLPISLKK---GAEK----------------FVEAM-PMNERI---------- 1216

Query: 1203 VEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1262
                               ASK V  E  L           ++S+F  SL  PGE +G +
Sbjct: 1217 -------------------ASKFVRQEELLKL---------VKSKFFASLAQPGEPVGVL 1276

Query: 1263 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII-NVAKRIKTPSLSVYLKPEANK 1322
            AAQS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+   A  IKTP ++  L     K
Sbjct: 1277 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLL--KGK 1336

Query: 1323 TKERAKTVQCALEYTTLRSVTQATEVWYDP-----DPMSTIIDEDIDFVKSYYEMPDEEI 1382
            TKE A  +   L   T+  + ++ E+   P     + + +I    I+  K  +     +I
Sbjct: 1337 TKEDANDITDRLRKITVADIIKSMELSVVPYTVYENEVCSIHKLKINLYKPEHYPKHTDI 1396

Query: 1383 APEKISPWLLRVELNR-EMMVDKKLSMANIAEKIN-----------LEFDDDLTCIFN-- 1442
              E     +  V L + E  ++  + M +    I+            + DD ++   N  
Sbjct: 1397 TEEDWEETMRAVFLRKLEDAIETHMKMLHRIRGIHNDVTGPIAGNETDNDDSVSGKQNED 1456

Query: 1443 --DDNAEKLILRIRIMNDEAPKGELTDE--------------------------SAEDDV 1460
              DD+ E   +     + +  K + TDE                          S  +D 
Sbjct: 1457 DGDDDGEGTEVDDLGSDAQKQKKQETDEMDYEENSEDETNEPSSISGVEDPEMDSENEDT 1516

BLAST of CmaCh16G012550 vs. TAIR 10
Match: AT2G40030.1 (nuclear RNA polymerase D1B )

HSP 1 Score: 209.5 bits (532), Expect = 2.2e-53
Identity = 211/849 (24.85%), Postives = 362/849 (42.64%), Query Frame = 0

Query: 65  KCETCTANMAE-CPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEDDPKFKQ 124
           KCE+C A   + C GHFG+++L  P++H   +  +  ++  +C  C KI           
Sbjct: 56  KCESCGATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCLKCLKI----------- 115

Query: 125 AMRIKNPKNKLR-KILDACKNKTKCEGGDEIDVQGQDPDQPVKKGRGGCGAQQPKISI-- 184
             + K     L  ++L  C     CE   +I +          K R   GA   ++ +  
Sbjct: 116 -KKAKGTSGGLADRLLGVC-----CEEASQISI----------KDRASDGASYLELKLPS 175

Query: 185 -----DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLN 244
                 G     E    R  +D            + L A  V  +L+RI +E  K L   
Sbjct: 176 RSRLQPGCWNFLERYGYRYGSD----------YTRPLLAREVKEILRRIPEESRKKLTAK 235

Query: 245 PKYARPDWMILQVLPIPPPPVR-PSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGS 304
               +  + IL+ LP+PP  +  P      S+ S D    +L  +++    ++      +
Sbjct: 236 GHIPQEGY-ILEYLPVPPNCLSVPEASDGFSTMSVDPSRIELKDVLKKVIAIKSSRSGET 295

Query: 305 PAHIISEFAQLLQFHIATYFDNELPGLPRATQ----RSGRPIKSICSRLKAKEGRIRGNL 364
                   A  +   + TY   ++ G  +A +    R G    S  S  KA   ++R   
Sbjct: 296 NFESHKAEASEMFRVVDTYL--QVRGTAKAARNIDMRYGVSKISDSSSSKAWTEKMRTLF 355

Query: 365 MGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 424
           + K   FS+R+VIT D   +++E+G+P  IA  +T+ E V+ +N   L++LV+       
Sbjct: 356 IRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRGYLQKLVDDKLCLSY 415

Query: 425 GKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL--GYKVERHLNDGDFVLFNRQPSLHKMSI 484
            +    Y +RD             S  H EL  G  V R + DGD V  NR P+ HK S+
Sbjct: 416 TQGSTTYSLRD------------GSKGHTELKPGQVVHRRVMDGDVVFINRPPTTHKHSL 475

Query: 485 MGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 544
              R+ +   +T ++N  + SP +ADFDGD +++  PQS   +AEV+EL  V K ++S  
Sbjct: 476 QALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEVMELFSVEKQLLSSH 535

Query: 545 ANRPVMGIVQDSLLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPTILKPQ---PLW 604
             + ++ +  DSLL  R + +R  F+ K     + M+       +P P + K     P W
Sbjct: 536 TGQLILQMGSDSLLSLRVMLER-VFLDKATAQQLAMYG---SLSLPPPALRKSSKSGPAW 595

Query: 605 TGKQVFNLIIPKQINLTRTSAWHSESETGFITPGDTFVRIEKGELLTGTLCKKALGSSNG 664
           T  Q+  L  P++++                  GD F+ ++  +LL       A+GS   
Sbjct: 596 TVFQILQLAFPERLS----------------CKGDRFL-VDGSDLLKFDFGVDAMGSIIN 655

Query: 665 SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAK 724
            ++  I+ E GP     F    Q L+   L    FS+ + D     A M+ I+  I    
Sbjct: 656 EIVTSIFLEKGPKETLGFFDSLQPLLMESLFAEGFSLSLEDLSMSRADMDVIHNLIIREI 715

Query: 725 NEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMV 784
           + + + ++ +    L+           EN +++V   A +         + +S +++ ++
Sbjct: 716 SPMVSRLRLSYRDELQ----------LENSIHKVKEVAAN--------FMLKSYSIRNLI 775

Query: 785 TAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESR----GFVENS 844
              S  +   + Q T  +G Q  + K+     +   +  F K  YG  S     G V+  
Sbjct: 776 DIKSNSAITKLVQQTGFLGLQLSDKKKFYTKTLVEDMAIFCKRKYGRISSSGDFGIVKGC 813

Query: 845 YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD- 890
           +  GL P E   H++  RE ++ ++   +E G + + L+  + DI++  DGTVRN+  + 
Sbjct: 836 FFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNS 813