CmaCh16G012540 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G012540
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Peptide methionine sulfoxide reductase MrsB
Location	Cma_Chr16: 9478299 .. 9478679 (-)
RNA-Seq Expression	CmaCh16G012540
Synteny	CmaCh16G012540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATCTATTCCTGTGCGGAATGCGGAGCAAATCTGAATCTGAATTCCAGTCATCTCTTCCCGCCGGATTTCTATTTCGAGGCCGGAAACAAGGGCACGCTTTCGTTTTCCTTGATCGACTCCACCAAGTTCAGGCTCGAGAAAGAGGACAAGCTCCGCCCATTCTTCGAGACCGTCAACTATTGGGGAATCCAGCGGAAACGCACCAAGATCAAGTGCAATTCATGTGCGCGTCTCGTCGGCTATGTTTACGACGATGGGCCTCCTCTCACCGATAGTCCTGGTCAGTACCACTTCGGACCTAGCCAGGTTATTCCCCGAGCTCCTAGATACAGATTCAAGATCAAGGAGCTTCGGATTTCCTCTGAGAGTTGA

mRNA sequence

ATGGCTTCCATCTATTCCTGTGCGGAATGCGGAGCAAATCTGAATCTGAATTCCAGTCATCTCTTCCCGCCGGATTTCTATTTCGAGGCCGGAAACAAGGGCACGCTTTCGTTTTCCTTGATCGACTCCACCAAGTTCAGGCTCGAGAAAGAGGACAAGCTCCGCCCATTCTTCGAGACCGTCAACTATTGGGGAATCCAGCGGAAACGCACCAAGATCAAGTGCAATTCATGTGCGCGTCTCGTCGGCTATGTTTACGACGATGGGCCTCCTCTCACCGATAGTCCTGGTCAGTACCACTTCGGACCTAGCCAGGTTATTCCCCGAGCTCCTAGATACAGATTCAAGATCAAGGAGCTTCGGATTTCCTCTGAGAGTTGA

Coding sequence (CDS)

ATGGCTTCCATCTATTCCTGTGCGGAATGCGGAGCAAATCTGAATCTGAATTCCAGTCATCTCTTCCCGCCGGATTTCTATTTCGAGGCCGGAAACAAGGGCACGCTTTCGTTTTCCTTGATCGACTCCACCAAGTTCAGGCTCGAGAAAGAGGACAAGCTCCGCCCATTCTTCGAGACCGTCAACTATTGGGGAATCCAGCGGAAACGCACCAAGATCAAGTGCAATTCATGTGCGCGTCTCGTCGGCTATGTTTACGACGATGGGCCTCCTCTCACCGATAGTCCTGGTCAGTACCACTTCGGACCTAGCCAGGTTATTCCCCGAGCTCCTAGATACAGATTCAAGATCAAGGAGCTTCGGATTTCCTCTGAGAGTTGA

Protein sequence

MASIYSCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETVNYWGIQRKRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKELRISSES

Homology

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BLAST of CmaCh16G012540 vs. TAIR 10
Match: AT2G17705.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08330.1); Has 135 Blast hits to 135 proteins in 32 species: Archae - 5; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 209.9 bits (533), Expect = 1.2e-54
Identity = 91/125 (72.80%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 2   ASIYSCAECGANLNLNSSHLFPPDFYFEAGNKGTLSFSLIDSTKFRLEKEDKLRPFFETV 61
           ++IY+C ECG++LNLN + LFPPDFYFEAGNKGTLSF+ +D+ KFR EKEDK+ PFFET+
Sbjct: 3   STIYTCKECGSDLNLNPNDLFPPDFYFEAGNKGTLSFAAVDAEKFRFEKEDKIMPFFETL 62

Query: 62  NYWGIQRKRTKIKCNSCARLVGYVYDDGPPLTDSPGQYHFGPSQVIPRAPRYRFKIKELR 121
           NYWGIQRKRTKIKC SC  L+GY+YDDGPPLT   GQY FGPSQVIPRAPRYRFK K ++
Sbjct: 63  NYWGIQRKRTKIKCTSCNHLIGYIYDDGPPLTGGIGQYGFGPSQVIPRAPRYRFKTKAVQ 122

Query: 122 ISSES 127
           +SS++
Sbjct: 123 VSSQT 127

The following BLAST results are available for this feature:

BLAST of CmaCh16G012540 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G012540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17705.1	1.2e-54	72.80	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33674:SF5	METHIONINE-S-OXIDE REDUCTASE	coord: 1..125
None	No IPR available	PANTHER	PTHR33674	METHIONINE-S-OXIDE REDUCTASE	coord: 1..125
IPR011057	Mss4-like superfamily	SUPERFAMILY	51316	Mss4-like	coord: 4..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G012540.1	CmaCh16G012540.1	mRNA