CmaCh16G012300 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G012300
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Mediator of RNA polymerase II transcription subunit 10
Location	Cma_Chr16: 9327015 .. 9330190 (+)
RNA-Seq Expression	CmaCh16G012300
Synteny	CmaCh16G012300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTCTTTCCACTTCCCTCTCGGATTCAAAGCTCCAGGCTTCCACGGTTAACATTCAGCCCTCGCTCCCCATCCGATTTTTTCCTCAACCTCCCTCGAACTAGTAAGTAATTCAAGTTTTATATTCTTTTAATTTTCAGTTCTTTGATTTCAGCCGTCGTTGTTGATCGATTTTGAGAATTGTTGTTCTTCGGTCCATGATTTTTGTAATTCTAATTTGTGAGAGAGTTTGGTTTACGGCGACGTGGTTTGATTTTGTTTTCATTCAAGCTTGTTACTATTTTTGCTATGATTTGTGGGATTTTAACTAGTCGTAGGGCTTGTTTTTTTCTCCTCCTTCAAGGATACTGTTGAGCCAATAGATCGAGTCCCTTCACTTTAGGGTTTGCATAGTTGGGGTTTCTCAGTGGCCCTTCGCGGTCAGAGGATAGTAATTTCATGATAACCGTTTTGCAGCTGCTTTCCAAATGGGGAAATGTTTAGTGAATCGAAAATTATGATAAATTTTTATAGAAAAGCAAGACCCAAGTAGGGTTTTTGTGACATTGTTAAAAATTGAAATGGCATTTTGACAGTTTGGAGAGTTAGTACTTGTTGAGTTTATGTACAGAACGATCAACTATTTGCCAGTTCTCTTTTATATTGAATTGTTGGAAAATATGGATTTAAGACATCCAAGGTATTTAGGAAGTGAAAAGAAGATAATGGATTCAGCTCAGAATGCATCTTCTGCTGCCGGAACTGGTGGAAGTGGTGGGAATGGATCAGTCATCAATGATACTTCAGCATCAACTACTGTGGATGATTCAAAGCAAAACTTGAACCAAGTAATCAATTCCATACAGAAAACTTTGGGTATCCTCCATCAGCTCAACCTCACCGTTTCTAACTTCAATGCTGCCTATCAGCTGCCTCTTTTACAACGCCTGTACGCCCAGTTTTGCTTCATCTAATGTCTGTTTCGTTCATTATTCACTCCTTGTTCCACTCTATATCAGTGATATGTTTTTGGATTTTGCAGTAATTCTCTAGTTTTGGAGCTTGATAACATGGTTAAATTATCAGAGAAGTGCACCATCCAGGTCCCTATGGAGGTTGTTAAGTGAGTCTTTGTACACCTACTCTGATCTCTAGCTTCGCAAGCGTATTTTTTATATTATTATTTTCTCAACCCTTCTATTTTTCTTGGTCCATTTCTTACTTTTCTTTTGATTAGCTTGATTGATGATGGGAAGAATCCAGATGAATTCACGAGGGATGTCTTAAATAGTTGCATTGCAAAAAATCAAAGTACAAAAGGCAAAACTGATGCCTTCAAGGTAGTCTTTACATCTCTATGGGGCATACTGTTAAAAATCTACTTATACCTTTTGTTTCTTTTATCTTGATTCCAAAGATTCAAGAAAATATTTATTTTAAGGTTGTACTGCTTACCATATTCAGGGCTTACGGAAGCATCTTTTGGAGGAGCTTGAACAGACATTTCCTGATGAAGTCGAGTCTTATAGAGAAATTCGTGCTGCTTCTGCTGCCGTGAGTTGAAATTTCTTTCCTGCTGTCAATTTTATCACTACCTTCAAATTTTTATATATATATATATTTAATTTCAAACTGATCAAAATATTTTCTACACTTTTATGGCTTAATTTTTACTTTATCTGTAGCCATAAGCTAAATGTATTTTCAAAGTTCGCCTCATCCTTTCACAAGCATTTCTTGGCCATTTATATCTTTTTGGTGGTTTTGGATATAACATCAAAGATGTGAAAAATGTAAACTATGTTATGGTGTCAGTTCTAGGTATAGTAGGAGGATGTTCATTACTTTAATTTTATTGTATGTTAAGTTATTAAGACTCACTTACACTTTAGACTGCTCTACTACACGTAGGAGTGGTTTTAATATAAGATATTGGACAAGTTCTGTTCTGTTATCTTGAGCTTGGTTGCAGGTTATAGTTACTTTGTTGTATGGTTTACGTTGGTTTTTTCTTAGTGTCAAAAAATAAGAGGAAACAAGTAGCATGTTTGTTTTATGATTCATAGGTTGATTGAATTCTGCTTGCTTAAAAACTACTTTCTGGTTATTTTTTAAACATCTCTCAAGCCAATTTTACCTCAAAAACATTTTCCTTTATGAATAAAATGGCTTAATGAATTTAGAATCAGATTAAACTATTTTATTTTCTAGTTTGTTGAGCAAAGTTTTGTAATTAGCTTTTATGAAGTAAAGAACTTGGAGTACTTACTGCCTCTAATTGTATAACCATCTTTCCACTTTTGGTGCATAGTAAATATTTTGTGATATCTAGGTCTGTTGTTCACGTGCCCCAGTGGAAATTAGGGTACTGAGTTTTTTTTTTACTTGGTGGTAGTTTTAAGTTTGACTATTCATGTCGGTGCCTTAGCTACATGTTATTGTGTCATTGCTCCTTTCAAGTGAATTAAACTTATATTGTATAAGGACATTAGAACGAGCATGAGTTATGTCCTTTTGACTTAGATACCAAAAATTTGATCGGAGCTGAAATTTTAATGCAATATCAGTGGAATACACAAGATATAACCTCTTACGGGCTCAAAAATTTCGCAACTATGTATACATACTACATCCATCTTGCTTTAGATAAGAGGTTCTTCTGCAATCATTGCTTAAATATCTTCTGCTAGAGGGGAACCATAGAATCCAATTGAGCTATATTTCCTATTTCCCAGATCATTTTCTGAGATCAAATGGCTGGATAACAATTTAATTGAATTTGATGGGAAATAAACCTTGATTGCTATATATTAAAATATGTGGGTGATAACCTTTTTAGACGACCGTTCCTTTCCTTCAACATTTACTAACAAACTCACCATCTTATAGCTTTGTGCCCATAGCCTGTATGAGTATGGGAAACCAAAAACTTCTACTTTTTTTGGACAGCTAGTGAATCAATTATAACTATAAAAGACATAAGGATATACTTGTATCGAAAACTCTTGTTTTTTATTTTTTCTTTTACGAATTTTCACTTATTCATCAACATTTCCATACAAGTACATCGTTCATTATGTTTTTATATTATTGCGTTCGAATTTTAATCTTGTTTCAACAAATGCAGGAATCGAAAAGGATAGCGCAATCACAAAGTATGTTGCCAAACGGGGACATGAAGGTTAAGATGGAGATTTAA

mRNA sequence

CCTCTTTCCACTTCCCTCTCGGATTCAAAGCTCCAGGCTTCCACGGTTAACATTCAGCCCTCGCTCCCCATCCGATTTTTTCCTCAACCTCCCTCGAACTAGTAAGTAATTCAAGTTTTATATTCTTTTAATTTTCAGTTCTTTGATTTCAGCCGTCGTTGTTGATCGATTTTGAGAATTGTTGTTCTTCGGTCCATGATTTTTGTAATTCTAATTTGTGAGAGAGTTTGGTTTACGGCGACGTGGTTTGATTTTGTTTTCATTCAAGCTTGTTACTATTTTTGCTATGATTTGTGGGATTTTAACTAGTCGTAGGGCTTGTTTTTTTCTCCTCCTTCAAGGATACTGTTGAGCCAATAGATCGAGTCCCTTCACTTTAGGGTTTGCATAGTTGGGGTTTCTCAGTGGCCCTTCGCGGTCAGAGGATAGTAATTTCATGATAACCGTTTTGCAGCTGCTTTCCAAATGGGGAAATGTTTAGTGAATCGAAAATTATGATAAATTTTTATAGAAAAGCAAGACCCAAGTAGGGTTTTTGTGACATTGTTAAAAATTGAAATGGCATTTTGACAGTTTGGAGAGTTAGTACTTGTTGAGTTTATGTACAGAACGATCAACTATTTGCCAGTTCTCTTTTATATTGAATTGTTGGAAAATATGGATTTAAGACATCCAAGGTATTTAGGAAGTGAAAAGAAGATAATGGATTCAGCTCAGAATGCATCTTCTGCTGCCGGAACTGGTGGAAGTGGTGGGAATGGATCAGTCATCAATGATACTTCAGCATCAACTACTGTGGATGATTCAAAGCAAAACTTGAACCAAGTAATCAATTCCATACAGAAAACTTTGGGTATCCTCCATCAGCTCAACCTCACCGTTTCTAACTTCAATGCTGCCTATCAGCTGCCTCTTTTACAACGCCTTAATTCTCTAGTTTTGGAGCTTGATAACATGGTTAAATTATCAGAGAAGTGCACCATCCAGGTCCCTATGGAGGTTGTTAACTTGATTGATGATGGGAAGAATCCAGATGAATTCACGAGGGATGTCTTAAATAGTTGCATTGCAAAAAATCAAAGTACAAAAGGCAAAACTGATGCCTTCAAGGGCTTACGGAAGCATCTTTTGGAGGAGCTTGAACAGACATTTCCTGATGAAGTCGAGTCTTATAGAGAAATTCGTGCTGCTTCTGCTGCCGAATCGAAAAGGATAGCGCAATCACAAAGTATGTTGCCAAACGGGGACATGAAGGTTAAGATGGAGATTTAA

Coding sequence (CDS)

ATGTACAGAACGATCAACTATTTGCCAGTTCTCTTTTATATTGAATTGTTGGAAAATATGGATTTAAGACATCCAAGGTATTTAGGAAGTGAAAAGAAGATAATGGATTCAGCTCAGAATGCATCTTCTGCTGCCGGAACTGGTGGAAGTGGTGGGAATGGATCAGTCATCAATGATACTTCAGCATCAACTACTGTGGATGATTCAAAGCAAAACTTGAACCAAGTAATCAATTCCATACAGAAAACTTTGGGTATCCTCCATCAGCTCAACCTCACCGTTTCTAACTTCAATGCTGCCTATCAGCTGCCTCTTTTACAACGCCTTAATTCTCTAGTTTTGGAGCTTGATAACATGGTTAAATTATCAGAGAAGTGCACCATCCAGGTCCCTATGGAGGTTGTTAACTTGATTGATGATGGGAAGAATCCAGATGAATTCACGAGGGATGTCTTAAATAGTTGCATTGCAAAAAATCAAAGTACAAAAGGCAAAACTGATGCCTTCAAGGGCTTACGGAAGCATCTTTTGGAGGAGCTTGAACAGACATTTCCTGATGAAGTCGAGTCTTATAGAGAAATTCGTGCTGCTTCTGCTGCCGAATCGAAAAGGATAGCGCAATCACAAAGTATGTTGCCAAACGGGGACATGAAGGTTAAGATGGAGATTTAA

Protein sequence

MYRTINYLPVLFYIELLENMDLRHPRYLGSEKKIMDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAESKRIAQSQSMLPNGDMKVKMEI

Homology

[Close]

BLAST of CmaCh16G012300 vs. ExPASy Swiss-Prot
Match: F4HPA7 (Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana OX=3702 GN=MED10B PE=1 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 7.9e-67
Identity = 142/193 (73.58%), Postives = 163/193 (84.46%), Query Frame = 0


Query: 35  MDSAQNASSAAGTGGSGGNGSV---IND-TSASTTVDDSKQNLNQVINSIQKTLGILHQL 94
           MD  QN S  AG GGS  NG++    ND TS  T  DDSK+NL+QVINSI+KTLG+LHQL
Sbjct: 1   MDPTQNTS--AGIGGS--NGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQL 60

Query: 95  NLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRD 154
           +LTV++F  A QL LLQRLNSLV+ELDNM KLSEKC IQ+PMEV+NLIDDGKNPDEFT+D
Sbjct: 61  HLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKD 120

Query: 155 VLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAESKRIAQSQS 214
           VLNSCIA+NQ TKGKTDAFK LRKH+LEELEQ FPDEV+ YREIRA+SAA +KR+AQSQS
Sbjct: 121 VLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAAVTKRLAQSQS 180

Query: 215 MLPNGDMKVKMEI 224
           +LPNGD KVK E+
Sbjct: 181 VLPNGDAKVKNEL 189

[Close]

BLAST of CmaCh16G012300 vs. ExPASy Swiss-Prot
Match: Q9FHZ2 (Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana OX=3702 GN=MED10A PE=1 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 5.9e-62
Identity = 133/190 (70.00%), Postives = 156/190 (82.11%), Query Frame = 0


Query: 35  MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 94
           MD  QN  + AG G    NGS+  + +A  TVDDS + LNQ+INS QK L +LHQL LTV
Sbjct: 1   MDQTQN--TIAGIGEI--NGSIKTEINAIATVDDSNEKLNQIINSNQKILELLHQLKLTV 60

Query: 95  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLN- 154
           S+F  A QL LLQRLNSLV+ELDNM KLS+KC IQVP+EV+NLIDDGKNPDEFT+DVLN 
Sbjct: 61  SSFTPASQLHLLQRLNSLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNK 120

Query: 155 SCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAESKRIAQSQSMLP 214
           +CIAKNQ TKGK+DAFKGLRKHLLEELEQ FPDEV+ YR+IRA+ AAE+KR+AQ+QS+LP
Sbjct: 121 NCIAKNQVTKGKSDAFKGLRKHLLEELEQAFPDEVDRYRDIRASYAAEAKRLAQTQSVLP 180

Query: 215 NGDMKVKMEI 224
           NGD KVK E+
Sbjct: 181 NGDAKVKSEL 186

[Close]

BLAST of CmaCh16G012300 vs. ExPASy Swiss-Prot
Match: Q16G71 (Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti OX=7159 GN=MED10 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.9e-16
Identity = 42/123 (34.15%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 73  LNQVINSIQKTLGILHQLNLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPM 132
           L  + N ++  +  + Q+ + VS+F    Q  L Q++ SLV  L  + KL  +  + VP+
Sbjct: 5   LENLENHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQVDVNVPL 64

Query: 133 EVVNLIDDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYR 192
           EV + ID G+NP  +T+D ++  + KN+  KGK D+++  + +L++EL++TFP E+  Y+
Sbjct: 65  EVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELDETFPTEIAKYK 124

Query: 193 EIR 196
            IR
Sbjct: 125 AIR 127

[Close]

BLAST of CmaCh16G012300 vs. ExPASy Swiss-Prot
Match: Q7Q5R5 (Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae OX=7165 GN=MED10 PE=3 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 6.4e-16
Identity = 42/123 (34.15%), Postives = 74/123 (60.16%), Query Frame = 0


Query: 73  LNQVINSIQKTLGILHQLNLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPM 132
           L  + N ++  +  + Q+ + VS+F    Q  L Q++ SLV  L  + KL  +  + VP+
Sbjct: 5   LENLENHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQIDVNVPL 64

Query: 133 EVVNLIDDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYR 192
           EV + ID G+NP  +T+D ++  + KN+  KGK D+++  + +L++EL +TFP E+  Y+
Sbjct: 65  EVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELSETFPVEISKYK 124

Query: 193 EIR 196
            IR
Sbjct: 125 AIR 127

[Close]

BLAST of CmaCh16G012300 vs. ExPASy Swiss-Prot
Match: Q9CXU0 (Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus OX=10090 GN=Med10 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-14
Identity = 43/117 (36.75%), Postives = 70/117 (59.83%), Query Frame = 0


Query: 80  IQKTLGILHQLNLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKC-TIQVPMEVVNLI 139
           ++K +  + QL + VS+F  + Q  L Q+LN +V  L ++ K  ++   I VP+EV   I
Sbjct: 12  LEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYI 71

Query: 140 DDGKNPDEFTRDVLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIR 196
           D G+NP  +T++ L   +AKN+  KGK D  K  +  L++EL + FP+++  YR IR
Sbjct: 72  DQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128

[Close]

BLAST of CmaCh16G012300 vs. TAIR 10
Match: AT1G26665.1 (Mediator complex, subunit Med10 )

HSP 1 Score: 257.7 bits (657), Expect = 8.7e-69
Identity = 143/193 (74.09%), Postives = 164/193 (84.97%), Query Frame = 0


Query: 35  MDSAQNASSAAGTGGSGGNGSV---IND-TSASTTVDDSKQNLNQVINSIQKTLGILHQL 94
           MD  QN S  AG GGS  NG++    ND TS  T  DDSK+NL+QVINSI+KTLG+LHQL
Sbjct: 1   MDPTQNTS--AGIGGS--NGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQL 60

Query: 95  NLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRD 154
           +LTV++F  A QL LLQRLNSLV+ELDNM KLSEKC IQ+PMEV+NLIDDGKNPDEFT+D
Sbjct: 61  HLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKD 120

Query: 155 VLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAESKRIAQSQS 214
           VLNSCIA+NQ TKGKTDAFK LRKH+LEELEQ FPDEV+ YREIRA+SAAE+KR+AQSQS
Sbjct: 121 VLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAAEAKRLAQSQS 180

Query: 215 MLPNGDMKVKMEI 224
           +LPNGD KVK E+
Sbjct: 181 VLPNGDAKVKNEL 189

[Close]

BLAST of CmaCh16G012300 vs. TAIR 10
Match: AT1G26665.2 (Mediator complex, subunit Med10 )

HSP 1 Score: 255.0 bits (650), Expect = 5.6e-68
Identity = 142/193 (73.58%), Postives = 163/193 (84.46%), Query Frame = 0


Query: 35  MDSAQNASSAAGTGGSGGNGSV---IND-TSASTTVDDSKQNLNQVINSIQKTLGILHQL 94
           MD  QN S  AG GGS  NG++    ND TS  T  DDSK+NL+QVINSI+KTLG+LHQL
Sbjct: 1   MDPTQNTS--AGIGGS--NGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQL 60

Query: 95  NLTVSNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRD 154
           +LTV++F  A QL LLQRLNSLV+ELDNM KLSEKC IQ+PMEV+NLIDDGKNPDEFT+D
Sbjct: 61  HLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKD 120

Query: 155 VLNSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAESKRIAQSQS 214
           VLNSCIA+NQ TKGKTDAFK LRKH+LEELEQ FPDEV+ YREIRA+SAA +KR+AQSQS
Sbjct: 121 VLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAAVTKRLAQSQS 180

Query: 215 MLPNGDMKVKMEI 224
           +LPNGD KVK E+
Sbjct: 181 VLPNGDAKVKNEL 189

[Close]

BLAST of CmaCh16G012300 vs. TAIR 10
Match: AT5G41910.1 (Mediator complex, subunit Med10 )

HSP 1 Score: 238.8 bits (608), Expect = 4.2e-63
Identity = 133/190 (70.00%), Postives = 156/190 (82.11%), Query Frame = 0


Query: 35  MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 94
           MD  QN  + AG G    NGS+  + +A  TVDDS + LNQ+INS QK L +LHQL LTV
Sbjct: 1   MDQTQN--TIAGIGEI--NGSIKTEINAIATVDDSNEKLNQIINSNQKILELLHQLKLTV 60

Query: 95  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLN- 154
           S+F  A QL LLQRLNSLV+ELDNM KLS+KC IQVP+EV+NLIDDGKNPDEFT+DVLN 
Sbjct: 61  SSFTPASQLHLLQRLNSLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNK 120

Query: 155 SCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAAESKRIAQSQSMLP 214
           +CIAKNQ TKGK+DAFKGLRKHLLEELEQ FPDEV+ YR+IRA+ AAE+KR+AQ+QS+LP
Sbjct: 121 NCIAKNQVTKGKSDAFKGLRKHLLEELEQAFPDEVDRYRDIRASYAAEAKRLAQTQSVLP 180

Query: 215 NGDMKVKMEI 224
           NGD KVK E+
Sbjct: 181 NGDAKVKSEL 186

The following BLAST results are available for this feature:

BLAST of CmaCh16G012300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HPA7	7.9e-67	73.58	Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana ...	[more]
Q9FHZ2	5.9e-62	70.00	Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana ...	[more]
Q16G71	2.9e-16	34.15	Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti OX=7159 ...	[more]
Q7Q5R5	6.4e-16	34.15	Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae OX=7...	[more]
Q9CXU0	2.0e-14	36.75	Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus OX=10090 ...	[more]

BLAST of CmaCh16G012300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26665.1	8.7e-69	74.09	Mediator complex, subunit Med10	[more]
AT1G26665.2	5.6e-68	73.58	Mediator complex, subunit Med10	[more]
AT5G41910.1	4.2e-63	70.00	Mediator complex, subunit Med10	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019145	Mediator complex, subunit Med10	PFAM	PF09748	Med10	coord: 79..192 e-value: 9.7E-29 score: 99.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..66
None	No IPR available	PANTHER	PTHR13345	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10	coord: 35..222
None	No IPR available	PANTHER	PTHR13345:SF9	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10A-RELATED	coord: 35..222

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G012300.1	CmaCh16G012300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0000785	chromatin
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity