CmaCh16G012270 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G012270
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Homer protein
Location	Cma_Chr16: 9288049 .. 9290875 (+)
RNA-Seq Expression	CmaCh16G012270
Synteny	CmaCh16G012270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCCTCATTGCAGCATAGGAGAGAGCGGATAAGCCAACGAAAGGAAGAAATGTCTGCAACAATCAAGCACTCATTTCTTTCTCCTTCAAATCCAATTCATCTCTCCGCAATCTCTACAAACTTTCTCAAATCACACCCTTCCTCCATGATCATCTCGCACATACCTTTAAGTTTCTCAACACCGCGTCTCAAAATCGTGAAATGTAGCTCGGAATCGAACGATGAAGCTCAAAACAATGTCAATTTGAATAATGCTTTGTCCAGCATGGTCGGTGAGCAGATTGAGGAACTTTTGAACAAGGAAGAGAATAGGAGTTTGCTCGATGGCTTGGAGAAGGCGTCGATGAGAGTTGAAATCGCCAAAAGGCAGTTGGCTGAGATCGAGAAACAGGAACTTGAGCTCAAACGATTCAAGGATCATATTAACCAGCTCGAAAGTAGAGCATCGGAGGTATTTAATTAATCCCTAATTAATTTCTTGGTGCGACAAAACACTCCTTTGTTATCTGTTTAATTGCAAACCGAGAACCTGACATGCTATTAGATTCAATGATTATATTAGCCAGCTTGAAAACATAGCTTCAGAGGTTTGTTAATCTCTTGATACTCCTGTTATGCAATGAAGTGTTCTTTCTTTGATTATCTATCTTAATGCAAACTAAGAAATCAAGGATGCTCTAGGATTCAAGGATTATATTAACCAACTCGCGGTTTGTTTAATTAATCTGTTACATATTCTTGTTGTGTGATAAAACACTCTTTTGAAATTTGCCTGTGAGGATGCTCTAGGAATCAAGGATTATATTAACTCCCTGAAAACGAAGCTTCAGAAGTTTGTGTTAATCAATCTCTTTCGTACTCTTGTTGAATCTGTTTGAATGCAAACCAAGAAATTGAGGTTGCTCTAGGGTGTGCATTTTGCTAATTTCTTTTGTTCGTGGCTGTTTTGAATTGTATTTAGTGAAATGGGAATCCTTGCTTGTATTGTATGTATACGTTAACAATTATTATAGATAATTTGTAACCGCCCAAGCCCACGGCTAGATATTGTCCTCTTTGGGCTTTCTCTTTCGGGCTTTCCCTCAAAGTTTTTCCCTCAAAGTTTTTAAAACACATCTGCTAGGGAGAGGTTTCCATACTTAGAAAGAATGTTTCGTTCTCCTCCCCAATCGAGGTGGAATCTCACAATCCACCCCCTTTGGGGCCAGTGTCCTTGTTGGCACACCGTCTCGTGTTCACGCTCCTTGCTGGCACACCGCCCGGTGTCTAGCTCTGATACCATTTGTAACCATCCAAGCCCACCGCTAGCAGATATTGTCCTTTTTTAGCTCTCTTTCGGGCTTCCCCTCAAAGTTTTTAAAACACGTTTTCTAGGGAGAGGTTTCCTTACACTTATAAAGAATGTTTCGTTCTCCTCCCTAACCAATGTGGAATCTCACAATCCACCCCCCTTTGGGACCCAGCGTTCTTGCTAGCACACCGCCTTGTGTCCACCCACCTTGCTGGCACATCGTTCGATGTCTAGCTCTGATACCATTTGTAACCACTCAAGCCTACCGCTAGCAGATATTGTCCTCTTTTGGTTTTCTCTTTCGGGCTTCTCCTTGAGGCCTTTAAAACGCGTCTGCTCCATGGAGGTTTCCACACACTTATAAAAAAAGTTTTGTTCTCCTCTCCAACCGATGTGAGATCTCACAAAATTTCCTTTGTGGTTGATTCAAGTGAGGAAAAGGAAATGGTCAACCATATTTTATCCCGTGCAAAATTAAGCCAATTTTTATTACCTTTTCATTTGAGGGAGGACCCAATAGCCTAGTAACCCTCCTCAATCGACCATTTTGAACTGTTTTATAACCTATGGGCTGGGTAGCAACCAAAATCCATCACTTATCGAAGTGAATTATATGTGTTGTTTCCAAGTGACAATAATATTGTTGGCAACTACAAATAACAGTAACATCTGGGTCACTTTGCTCATTTAAGATTGAAGAATGTCAAAAGGAGATATTGGAGGCAAGAGGGATGATCGAGGAGGCCGAGCGCTCTCTCTCACAAAGCGAGGGTGGAAATGCAAAAAGAGACGAGGAAGATGGAGGAATTGACAGAGATGAAGAGAGATTGGAATCTGTAAAAGCAGCGTCCATATCAGCCATTGTTGGCACACTTGCAGGGCTGCCTATCTTTCTTAATCAAGTGACCAGCATTTCTCAGCTTGCACTCCCTCTTGCAATCACCTTTATTAGCTGTGCCTTGTTTGGAGTTACATTCCGATACACAATAAGGAGAGACTTGGATAATATTCAGCTCAAGACTGGAACATCTGCCGCTTTCGGTTTCGTTAAAGGTATGAAAAATAGCGTCTTGAATAAAGAATTGAGTTATCTAAATCCATTGAGGAAGTATTATTGTTGCTAAATGCAGGTCTTGCAACACTAGATGGTGGAGTACCTCTGGAATTTAATGCTGAGAGTTTCTCATCACACGTCACTGATGCTGCTGTGTATGTATCTGAAAACCTTTATATATTTATTTCTGCTGCTGTTGCACTGGAATTCTGTTTCAAGTTGAGGTTATTAAGCCCTTTTCCTATAAGAAAATCAGTATAAGGGTCGTTTGGATATGAACTTCATCTCAAGAAGATTAAACTTAGTTCATGTTATCCAACTCCCTGGGCCATCGGGCTACAGATAAATGTAACATGTCTTAGAAATCTGATCAGTAAGCGTTGTGTTATTCTTGAAATGTTATGTCACTAATAGCTACTGATTAGATATGAGCTACTAATCAGACACGACTGGTTGAAGAAAGAAGAAAAGAGAAATGAAC

mRNA sequence

CGTCCTCATTGCAGCATAGGAGAGAGCGGATAAGCCAACGAAAGGAAGAAATGTCTGCAACAATCAAGCACTCATTTCTTTCTCCTTCAAATCCAATTCATCTCTCCGCAATCTCTACAAACTTTCTCAAATCACACCCTTCCTCCATGATCATCTCGCACATACCTTTAAGTTTCTCAACACCGCGTCTCAAAATCGTGAAATGTAGCTCGGAATCGAACGATGAAGCTCAAAACAATGTCAATTTGAATAATGCTTTGTCCAGCATGGTCGGTGAGCAGATTGAGGAACTTTTGAACAAGGAAGAGAATAGGAGTTTGCTCGATGGCTTGGAGAAGGCGTCGATGAGAGTTGAAATCGCCAAAAGGCAGTTGGCTGAGATCGAGAAACAGGAACTTGAGCTCAAACGATTCAAGGATCATATTAACCAGCTCGAAAGTAGAGCATCGGAGATTGAAGAATGTCAAAAGGAGATATTGGAGGCAAGAGGGATGATCGAGGAGGCCGAGCGCTCTCTCTCACAAAGCGAGGGTGGAAATGCAAAAAGAGACGAGGAAGATGGAGGAATTGACAGAGATGAAGAGAGATTGGAATCTGTAAAAGCAGCGTCCATATCAGCCATTGTTGGCACACTTGCAGGGCTGCCTATCTTTCTTAATCAAGTGACCAGCATTTCTCAGCTTGCACTCCCTCTTGCAATCACCTTTATTAGCTGTGCCTTGTTTGGAGTTACATTCCGATACACAATAAGGAGAGACTTGGATAATATTCAGCTCAAGACTGGAACATCTGCCGCTTTCGGTTTCGTTAAAGGTCTTGCAACACTAGATGGTGGAGTACCTCTGGAATTTAATGCTGAGAGTTTCTCATCACACGTCACTGATGCTGCTGTGTATGTATCTGAAAACCTTTATATATTTATTTCTGCTGCTGTTGCACTGGAATTCTGTTTCAAGTTGAGGTTATTAAGCCCTTTTCCTATAAGAAAATCAGTATAAGGGTCGTTTGGATATGAACTTCATCTCAAGAAGATTAAACTTAGTTCATGTTATCCAACTCCCTGGGCCATCGGGCTACAGATAAATGTAACATGTCTTAGAAATCTGATCAGTAAGCGTTGTGTTATTCTTGAAATGTTATGTCACTAATAGCTACTGATTAGATATGAGCTACTAATCAGACACGACTGGTTGAAGAAAGAAGAAAAGAGAAATGAAC

Coding sequence (CDS)

ATGTCTGCAACAATCAAGCACTCATTTCTTTCTCCTTCAAATCCAATTCATCTCTCCGCAATCTCTACAAACTTTCTCAAATCACACCCTTCCTCCATGATCATCTCGCACATACCTTTAAGTTTCTCAACACCGCGTCTCAAAATCGTGAAATGTAGCTCGGAATCGAACGATGAAGCTCAAAACAATGTCAATTTGAATAATGCTTTGTCCAGCATGGTCGGTGAGCAGATTGAGGAACTTTTGAACAAGGAAGAGAATAGGAGTTTGCTCGATGGCTTGGAGAAGGCGTCGATGAGAGTTGAAATCGCCAAAAGGCAGTTGGCTGAGATCGAGAAACAGGAACTTGAGCTCAAACGATTCAAGGATCATATTAACCAGCTCGAAAGTAGAGCATCGGAGATTGAAGAATGTCAAAAGGAGATATTGGAGGCAAGAGGGATGATCGAGGAGGCCGAGCGCTCTCTCTCACAAAGCGAGGGTGGAAATGCAAAAAGAGACGAGGAAGATGGAGGAATTGACAGAGATGAAGAGAGATTGGAATCTGTAAAAGCAGCGTCCATATCAGCCATTGTTGGCACACTTGCAGGGCTGCCTATCTTTCTTAATCAAGTGACCAGCATTTCTCAGCTTGCACTCCCTCTTGCAATCACCTTTATTAGCTGTGCCTTGTTTGGAGTTACATTCCGATACACAATAAGGAGAGACTTGGATAATATTCAGCTCAAGACTGGAACATCTGCCGCTTTCGGTTTCGTTAAAGGTCTTGCAACACTAGATGGTGGAGTACCTCTGGAATTTAATGCTGAGAGTTTCTCATCACACGTCACTGATGCTGCTGTGTATGTATCTGAAAACCTTTATATATTTATTTCTGCTGCTGTTGCACTGGAATTCTGTTTCAAGTTGAGGTTATTAAGCCCTTTTCCTATAAGAAAATCAGTATAA

Protein sequence

MSATIKHSFLSPSNPIHLSAISTNFLKSHPSSMIISHIPLSFSTPRLKIVKCSSESNDEAQNNVNLNNALSSMVGEQIEELLNKEENRSLLDGLEKASMRVEIAKRQLAEIEKQELELKRFKDHINQLESRASEIEECQKEILEARGMIEEAERSLSQSEGGNAKRDEEDGGIDRDEERLESVKAASISAIVGTLAGLPIFLNQVTSISQLALPLAITFISCALFGVTFRYTIRRDLDNIQLKTGTSAAFGFVKGLATLDGGVPLEFNAESFSSHVTDAAVYVSENLYIFISAAVALEFCFKLRLLSPFPIRKSV

Homology

[Close]

BLAST of CmaCh16G012270 vs. TAIR 10
Match: AT4G24090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 144 Blast hits to 142 proteins in 73 species: Archae - 3; Bacteria - 62; Metazoa - 7; Fungi - 13; Plants - 44; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). )

HSP 1 Score: 272.7 bits (696), Expect = 3.7e-73
Identity = 154/262 (58.78%), Postives = 196/262 (74.81%), Query Frame = 0


Query: 50  VKCSSESNDE-AQNNVNLNNALSSMVGEQIEELLNKEENRSLLDGLEKASMRVEIAKRQL 109
           ++ SSE N   + +  +L N+LS +VG Q+EELL++EEN+ LLDGLEKAS+RVEIAKR+L
Sbjct: 44  IRSSSEDNVAISSDGGDLKNSLSGIVGNQVEELLSREENKGLLDGLEKASLRVEIAKREL 103

Query: 110 AEIEKQELELKRFKDHINQLESRASEIEECQKEILEARGMIEEAERSLSQSEGGNAKRDE 169
            +IE+QE+E K  +D+INQLESRA+EI ECQ+EI  AR M+EEAERSLS ++       E
Sbjct: 104 EDIERQEIEAKLLQDYINQLESRAAEIAECQQEIDAARSMVEEAERSLSLADNSTIGSSE 163

Query: 170 EDGGIDRDEERLESVKAASISAIVGTLAGLPIFLNQVTSISQLALPLAITFISCALFGVT 229
           +   ID+D+ERLES KAA I+A VGT+A LP  L+QV S+ QL LPL I F SCALFGVT
Sbjct: 164 KGYSIDKDKERLESAKAAVIAAAVGTIAELPFALSQVASMEQLVLPLGIAFASCALFGVT 223

Query: 230 FRYTIRRDLDNIQLKTGTSAAFGFVKGLATLDGGVPLEFNAESFSSHVTDAAVYVSENLY 289
           FRY +RRDLD+  LK+G  AAFGFVKGL  L  G PLE + ES  SH  D AV VS+++ 
Sbjct: 224 FRYAVRRDLDDNHLKSGAVAAFGFVKGLGMLSRGPPLELSWESLFSHGIDGAVLVSQSVL 283

Query: 290 IFISAAVALEFCFKLRLLSPFP 311
           IF  A++ L+FCFK++LL PFP
Sbjct: 284 IFAFASIGLDFCFKMKLLRPFP 305

The following BLAST results are available for this feature:

BLAST of CmaCh16G012270 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G012270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24090.1	3.7e-73	58.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 94..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..176
None	No IPR available	PANTHER	PTHR36383	OS09G0529350 PROTEIN	coord: 34..314
None	No IPR available	PANTHER	PTHR36383:SF1	OS09G0529350 PROTEIN	coord: 34..314

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G012270.1	CmaCh16G012270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane