CmaCh16G012170 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G012170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein CYCLOPS
Location	Cma_Chr16: 9207691 .. 9215810 (-)
RNA-Seq Expression	CmaCh16G012170
Synteny	CmaCh16G012170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTCACTTTAGGGGAAACGAAGAACAAGATTTCCTTCATCGGGAGGAGCAAAAAGGCGATGTTGAAAATTTCTGTAAAAAATTCATTAACAATGGAACAGACGAAACCTCAATCAATGGATGGATGTGAAGAATCCGAACGAGAAACCGCGTAATTCGCTCGTTGATCGAACAGGTCGGCTTCTTTCAGGTCAGAAACTCGAAAGGCCTTCTCTCCTGCAGCATACGCTAAATCATGAAAGCGCCATTTCAGCGGCTTCATATTTGATTATAGAGACAGTTGCTATTGGTCATTTTCATGTCGCCGTCACGATCTGGCTCTATCTCGTAAGTATTTTTTAATTTATTCATTATACTTTTAGGTTATTTTATTGTATTGATGGAATAAGTCTTATTTGCTTGTTTGATTGGGGATTTAAATATTGGACATACCTTTTCAATTACAACGACGTCCAATAGGGAAGAAATTGTTTCTTATACTCCATGTAAAACGACAGATTATGACATGGGAATCTCCAACAAAATCCAATATTAATGGATGCTTCAAATCTTTTGAAATCACATCTATGTGTCTACTATTTGCTGGGGAATTTTGAATGAGCAATAATATATCCCTCTGCAGCATCCTCAAATACACACATTTTGATTACGTCTGTTAGTTCTAAAAAGTTATTACCGGCCTAGCTGCTTGTGATATTGCTTGGACGGTGTTTTGGGGTTTGGTTGTCAACTCTCAAATCATATGAAGTCAATGGTTGTGGTTTGACAGTATTGGGGTAGTTCATACGTCCTTATCACTATTGTGGCAATATGTTTAATCATAATTTTTGGTTTAATAAATGCTCCCTTTCGGGTTTGTGATATTCTTCTGAAGTTATTAGTGCCCACGGCTTGAAGGGCTTCCATTTATTCTTCTGGGTAGAAAGAGTTCAAACATCTTGAGTAGAACGATTATTTCTTACTATATGTGCACGAATTCGACAGAAGTTCTGGGGTTCTGAAAAGATCAAACAGAGTAGGCTGCTCAATTTGAGGTTTTTTTTTATGTTTTTATTTTGTTGAATTTGGGGATTTCAAAGGATAGCCTGAGCATATGATCCTTTTTAAAACCTGTATTTATATGTAGAATTTAGGCCTCTTTTTGTCTCGAAAAGATCCAAAGATTATCATAAAAATGGAAGGAAGGGGTGTATCAGAATTATATAGAAATGCAAGTGAGGAGCTATTTCTTAAATCTTGGGGGGAAAACTCAATCGGAATGTCAACACCAACCATGGAGATGATGGGATTTAAGAATCTTTCTCAGAGCTTCCGTACAGATAGTGAGGAACTTTTCAAAAGCTGGCTAACAAATGGAGAGGCAAGCAGTTCTATTATCTATTTGGCTTTGTTTACTTGTCGTTGAAAATAAAGATAAAACTTTAATCTGTTCAAGAATTGCTGAAACTGTCTGTAGTTTGCCCTGTTCACACTTTTAAACAAAGTTGCAAAGAAAATCAACCTCATTGGCGAATGCCTTATATCACCGTATCTCCTTCCTGGTGCATTGTGTGTGAATCTAGTAATGAGTCCCCGTGAAATTTATTCATGCATTTCCCATTTTCTTTTTGGTTTTAGCTTATATTTTGGATGCTTTGGTTGGTCTTTGCCTTTCCCCAACAACACCTCTGATCTCCTTGCTTCTATTTTGTTGGGTCATCCTTTTCATGGTACTAAGAAGGTCATTTGGCTTGCCATCAGTAGTGCTTTTTTCGGCACACTTCGGGGCACAAGGAATGGCCGTTTATGAAACTTGTTCTATTGCTTTCCTCTGGTGGAAGAATAAGTTCCCTTTTGCTCATTAAAGCTTTTCTTATTTAATCTTCAATTGAAGTGTGTTTTTTGTAATTCACCTCTAGGCATTTGGAGTTTTTACTCCTCTATTTCATCTATCAATGGAGTTGTTTCTCTTTCAAGAAAAGAAAAGAATTTTGTTATCAAGATTAGACTTCACTGTTTACAACCACGTTTTAGATTTTGATCCGTATTTTGCAGATGCTTTAATATTTTTGTGTAGAGCTGCTGAGTGTTAGTAAAATCATAAATTAGATCTTTCAACACCTTTACTTTTTTTTAATTTCTTCAGTAACTAGACAACATCAGATACTCTGGTGGGCATGAATGACCAACCCTTGATTTTCAAAATCATATTTGTGATGTTTCCTGTGTCAGAAAATCCAAAATGATCTATTAGGTTATTGATTCTTAATGTGACTTCATGGTCATACTTCCTAGTGTGATGGAAATACTTCTGATGTAACTTAGAAAAAATCTGCACAGATCATTACTTTCTTTAGGCATGATGATTCTGATGTAAAATTGTTCTTCAATCAAAGAAATATACCACTGTCTCCAGAAAATTCACTGAAATTTATTTGGATAACATGGATAAGCTGGAACACTATCTGCAATTGTTTGAGTAAGAAAAACATTATACGTTCAACATTGTTAAGTATGACACTCTAACATTTCTCTATCTTTTCATTATACAGATAGATTTATTTTCTTGACTCAAGTTTAGTCATTCATATTCTGAAAACTTGTATGAATATTTTTGCTGATCTATTTCTTTTTTCAGAACGTCAACAACTCATCAGGTCCGGCTTATCGCATTCGACAAGCATCAAGAAGGTTGGTATGTTAAATTAGTACACCTATAAAATGCTTATGAGGTGAATATGTCTGATGCCTTGTTTTGATTATGATTGGTTCTCCGCTTTTTAACCAAACATCAGTAGCGGTAATTAATTTTATTTGGATGCTTGGTAGGTTGCAAATAAGGTAAAAGCAGAAACATCTGTTTTGTTTCTAAGGATATAAATATTATCAATTCTTCCATCTTTTTATTTTGTATAATTATTCTTTATGTTATTTATTTATTATTATTATTTTCTTTTTTGTAGGATTTCCTCTGAGATTGTTGACCTGTCTAGTCCTCAGTATGTGGGAAAGCATCAAAAGAGAATAATTAATGATATTTTACGTCCACAAAGTGCCTCTGTGGCTGATGATGTCTCAGGAGTTAATCAACAAGTGTTCAGGTTTGCTCTTCAATTTTTTGAACCGCAGCTCTTATGCTATTGGTAATATTTCAATGGAATTTGCTTGTTCCCCAAATTCTTTGAGCATGAAAATTAGCTTACATTTTAAAAGGTGAATAGAACATAAAGGTTTTGGCATCTCTCCTTTGTTGGATGATTTATAAGTGTTTGACTTTTTGAACTTCTTCCAGGAATATTGTTGAAGGTGAAGTGCAAGGTAGTAACCTATATCTTGCTAAGGTTTGTTAATCTTCTCTTCAAAACTTAAGGCTAATAAAGCACATCACAACCTTTAAATATCTCACGTTTTTTTGCAGGCATGGTTCCATAGTTCTCAACCTATGACAAGAAGTCGATCATCTGAGCTAAGGTAATCATAGTGTGGACCAGTCTTCCACCATGATGATACTGAAATTTTTTATAAAAGAATGTTTTGCCATTTTTAATAATCGTATATGTCATCTTTTAAGCACTCGAGAAGCTAAATTTTCAGATTATTTCAAGTTTTTTCCCCCTTATCATGGATCTTTCTTTCAGAGTTCAGATTGAAATTGTAGAAATTTCAAATTTCTGCTGATTATTTATTGCAGCCTTCCTTCTCTAACGTCATTCCTGTTGTATTGATGAACCCAATTTATATTCCCTTCTATAGAAACTTGATTTCTATTGTAAAATGTCAATTACGTGGCTGAACTTATACTTGTCTGTTTTTCAATGCCTTATTTATTAATGATATCTAGGAGGAGGTACGCTGCAATGCAAAGCAATCAAAGCTCATTTGGTATCCAGTCCATTTATGACTTGTCAGGGCATGCAATGAAACTAGATGTTGCATACTCGCAGGGTTTCAATGACCTTTCTACTTGTGAGGTTCCAAACCAGCCTGTAACATTTGCATCCCCATCCAATTCATCGGCATCGACATTCAATGCATCTAACATGTATGATGTAGATAAAATTTCTTCAGTTGTAAACATGCTGAAGGACACAATAGAACGGAAGAAGCTAATAATCAGATTGATAAAGAGGCACTGGAGGATAGTTCAAACGCACATTTTTGTGCTCAAGAAACTATTGGCCAATCTAGTTTCAATAGAAGCAGTAACAATTATTTACATCAAACACCAAACTATCTTCTGGAAGTCTCTCCTGTTCAAGTCAAGGATAATAGAATTTTGGAAACGGTTGGGCTATCAACAGATATTGATTTCAAAGCTTTTGTAAATCCTGTAAATCCTGTAAATCCCGTACAGTCAGGTAGAGTTTCTCAAGAGCCTTCTCAAAGTGAATCTTCTGCTGCAGCAGCAGTAGTTTCATCCGGGTTTGAGGCATATGATGGTCCTAGCAACTCAAATCAAACTCATAGCAACAGTGAGAGCTCAAGGAAACAAGTTGAAAATGGATCTCGATCAAAAGGTAGCCAATCTGTCCAATGATACATTTGTTGTGTTGTTCTGTCGTTTCTGATTTATATTCTAACCTCGTTGGCCTTGTACATGGATGCATATCTAGTGATAATTTTAGATTTTTCCTACCTCATTCTAGTGGTTAGGAAGGTTCTTGATTTCCGAATGGCAACATTTTTGACACCCATATAATCGTTCACGGCCTCATATGTGGTTGTCATCAGAAAACTTCTTTAATTGTAGTGGAGTTTTGTATGTTTCAAATCGTAAGTAAATGGAAAATTTCCTAAACTTAGGTTACTTATGGATCCATCAATTATCTTCTCCCATTCCACGAATAAGACTGTAGGCTGCATTTGTAGAGGCCTTATAAATTTGAGTCAAGTCGCTTGACCACATTGACTAGTACACTGTGGAAACACATCCATTTGTTTCTACTATTTCAATTAACAAGTTTTTTTTTTCCTTCCTTTTATGTAACTCAACTTTCATTCTATGGAACTGCAGATTTCAGAGAAAGAATAATAGACAACTTGAAAGATGATAGAAAGGTACGCTCTTTTTCAACATGGTACAAACCTTTCAAATTATGCTATTTTTGCTACAAGCTTATAGTCAGAATAAGCTTCTTTTGCTGTCTATTTTGGCATTTATTGCAGAGGGGAAGTTTAGTCCGTAATGGGTCCGTAACATCAGCTGTTTCAGGTATCACTTATGTGTTAAACTACAATTTATAGACCTATGATTTTCGTGCTTCTGGGACATCCAATAAATTTGGAATGATACAAAGAAGACTGGCCTTGCACAAGGATATATCTATGCATTTCCTGTCATACGCATCAGATGATGAACACATAATCACAAGTTTTTTTCTTTTTTAAAATAACCGAACTTCCATAAAAAACTTTTATTAAGAAACATGAAAGAATAGACAAGAACATACAAAACATACACACACATCAACACACGACTCACGCTAGAGGAACCCCAACCTACAAACAGGGCTTTCGGTCCAAAAAGATAATACTTAACTGATAATTACAAAAGGACTTAAGAGGCCACTACCACGAGGTTGTATTAATCTAATATTTTTCCAAATTACTTGGTTTTATGCACGTATGTATGGAGGCTATATTTCTTCTAAATATGGGTCGAAGTCATGGAATTTGAACATTCCATGCAACAATGTCAAAAAATATCGGCTGCGACTCAGTTTCTTCACGCCAAAGACTGATCAACCCTTCTAAATATCCTGCCATTTTTTGAAACCAAACACACCACAAGATTGTTAAAAAAACAAGCCTGCCACAAGATCACAAATGAATCATTCTAAATTAATTCTATTGCTAGGGCTGGTGTAGTCTTTTATTTAGTATCAGCTAGAGATGTTCTAGTACAATCACCTTCCAGGGAACAACTTGCTTGCAGAAAACATGGATTACTTTAAGAATGATAATATGCTCAACCTTTATTTCTCTAATTTTATAGTTGATTAATTTATTGGATGCTCTGAAGTTGTAATTGATTACCAATGTAAGCAAAATACTTTTTATAACCACTAAAATTCTGGCAGTGGACAAAGGGGATCCCACAAAAAAGCGTCGGGTGGAACGATCACGAAAGTATGTAGTCTCTCTCTCAATCTGCATAAATTATGACCGCAAAAATTCAATTCTCGCAATTGATTAGATGCAAATTTTGTTTAGCACTCATCAATTTGGGGAAAGTGACAGGCTTTTCTATTCTTGTATCGTATTTGTGTGCAAATCTAAGCTCTAAAGTGTGCAGAATGGCAGAGGCGAAAGAGAGAAATATGACACCAACTATTCCATCAGATATGCAATCAGTTCTGAAGCGGTGTGATACTCTTGAGAAGGAAGTGCGGTCACTGAAGCTCAATTTGTCCTTTATGAATAGGTAATAGCACTAATTATATAAACTACGCTTCAACAGAATATTAGAGGTATTTAAGCTTATTAGCATGCCTTCTATTTCTAATATTTGGATAAAATTGCATCCTAACTTTTAGGTTCTATCAACCAAAACTTCAAACTACTTATTGTATTAACTAAAGTTTTGAAGTTTCTTTCATTCATCATATCATTAATGAGAAATGGTTTCGTTAATGAATCAATTTAAGCCTTTTAGCTATTAATACATAATTTTCACACGTATATAAGATTTCTTTAAAGTCAAGGCTTAACGAAATATTAGAGAAAAAAATGCTAGAATCAAATAGAGTGTAACAACTTCTATTAGTATGAGTGGTTTTTTTATCTTTTCTTCTTCCACTATTTTACTTTACTTATTTAGCAAGAATTCTGTGGTAAGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTACATAGGAATTTGAGAGAAGAATAGTTTTATACAAGTGATCCTAACTTAATTTTAAATGAAATTAAGTAAAAGGAGTTATAAATGAAAGTTTAGAATTGAGATTACAATTATTAGTATGAAATTTTAATCATGTTTTGATTTGTACTGCTTTTCCAAGCCCAATAAAGATCTCACGTTTTAAGATAATAACTCGTCGTTATTGTCTAAATTGGGAGGATAAAATCTTCCATAATAAATGACTTCCGCTGACAGTTCAAGACCATACTAAAAACATATATTTATACGTAGCTGAAATTTCTTATTTTTGTTGAAGTTTTATCACTAGTTTTCTTTCAATTATGTGGTAATGTGATTTTCGCAAGTCCTGTTGAAGACTGAGCTCTGATTATATTATAACTGTTAAAAAAAAGCTCTATATATATCATGATGACATTCCGTTTGCTGAAAGGAATGCTAACTGTTGAAATTCTCTCCGGTGGTTCTGACTTCTACAACATTTGCCAGATTCATTCTGGCTTCCATTGATCTCATCTCTTGCTTTTGATTTCTCTGAACTGTAAAGGTTTTAAGGACCATGTTCTTGATATTACATACAGGAAGGATTCTGAGCAGACTAAGCAGATAGAGGATCTTCAAAAGCAGAATGAGGACTTGGCAGATGAAAAGGAACGCCTGCTTGAAGAGATTGAAAGGATTCTCTCAGAAACTGGAAGAATGTAAGTGTTATATTGACCATTATACTCAAATTATGTGTAGGCATAGCTATAAGAAAAACTTCAGGAAGGGCCCAATTGTTATGTGCATTAGTAGTTTTGGGACTTCATAACTTCTCATCTCTGTAACTCTTAGAATGTTCACAAACAGATGGTTAATTGGTTATTTGCTGTTTGAGAGTTGAGAAATGTCCTGAAGATTCAGTGACCAAAGACAAAGTACAGGCA

mRNA sequence

TGTTCACTTTAGGGGAAACGAAGAACAAGATTTCCTTCATCGGGAGGAGCAAAAAGGCGATGTTGAAAATTTCTGTAAAAAATTCATTAACAATGGAACAGACGAAACCTCAATCAATGGATGGATGTGAAGAATCCGAACGAGAAACCGCGTAATTCGCTCGTTGATCGAACAGGTCGGCTTCTTTCAGGTCAGAAACTCGAAAGGCCTTCTCTCCTGCAGCATACGCTAAATCATGAAAGCGCCATTTCAGCGGCTTCATATTTGATTATAGAGACAGTTGCTATTGGTCATTTTCATGTCGCCGTCACGATCTGGCTCTATCTCAATTTAGGCCTCTTTTTGTCTCGAAAAGATCCAAAGATTATCATAAAAATGGAAGGAAGGGGTGTATCAGAATTATATAGAAATGCAAGTGAGGAGCTATTTCTTAAATCTTGGGGGGAAAACTCAATCGGAATGTCAACACCAACCATGGAGATGATGGGATTTAAGAATCTTTCTCAGAGCTTCCGTACAGATAGTGAGGAACTTTTCAAAAGCTGGCTAACAAATGGAGAGAACGTCAACAACTCATCAGGTCCGGCTTATCGCATTCGACAAGCATCAAGAAGGATTTCCTCTGAGATTGTTGACCTGTCTAGTCCTCAGTATGTGGGAAAGCATCAAAAGAGAATAATTAATGATATTTTACGTCCACAAAGTGCCTCTGTGGCTGATGATGTCTCAGGAGTTAATCAACAAGTGTTCAGGAATATTGTTGAAGGTGAAGTGCAAGGTAGTAACCTATATCTTGCTAAGGCATGGTTCCATAGTTCTCAACCTATGACAAGAAGTCGATCATCTGAGCTAAGGAGGAGGTACGCTGCAATGCAAAGCAATCAAAGCTCATTTGGTATCCAGTCCATTTATGACTTGTCAGGGCATGCAATGAAACTAGATGTTGCATACTCGCAGGGTTTCAATGACCTTTCTACTTGTGAGGTTCCAAACCAGCCTGTAACATTTGCATCCCCATCCAATTCATCGGCATCGACATTCAATGCATCTAACATTTTCAATAGAAGCAGTAACAATTATTTACATCAAACACCAAACTATCTTCTGGAAGTCTCTCCTGTTCAAGTCAAGGATAATAGAATTTTGGAAACGGTTGGGCTATCAACAGATATTGATTTCAAAGCTTTTGTAAATCCTGTAAATCCTGTAAATCCCGTACAGTCAGGTAGAGTTTCTCAAGAGCCTTCTCAAAGTGAATCTTCTGCTGCAGCAGCAGTAGTTTCATCCGGGTTTGAGGCATATGATGGTCCTAGCAACTCAAATCAAACTCATAGCAACAGTGAGAGCTCAAGGAAACAAGTTGAAAATGGATCTCGATCAAAAGATTTCAGAGAAAGAATAATAGACAACTTGAAAGATGATAGAAAGAGGGGAAGTTTAGTCCGTAATGGGTCCGTAACATCAGCTGTTTCAGTGGACAAAGGGGATCCCACAAAAAAGCGTCGGGTGGAACGATCACGAAAAATGGCAGAGGCGAAAGAGAGAAATATGACACCAACTATTCCATCAGATATGCAATCAGTTCTGAAGCGGTGTGATACTCTTGAGAAGGAAGTGCGGTCACTGAAGCTCAATTTGTCCTTTATGAATAGGAAGGATTCTGAGCAGACTAAGCAGATAGAGGATCTTCAAAAGCAGAATGAGGACTTGGCAGATGAAAAGGAACGCCTGCTTGAAGAGATTGAAAGGATTCTCTCAGAAACTGGAAGAATGTAAGTGTTATATTGACCATTATACTCAAATTATGTGTAGGCATAGCTATAAGAAAAACTTCAGGAAGGGCCCAATTGTTATGTGCATTAGTAGTTTTGGGACTTCATAACTTCTCATCTCTGTAACTCTTAGAATGTTCACAAACAGATGGTTAATTGGTTATTTGCTGTTTGAGAGTTGAGAAATGTCCTGAAGATTCAGTGACCAAAGACAAAGTACAGGCA

Coding sequence (CDS)

ATGGATGTGAAGAATCCGAACGAGAAACCGCGTAATTCGCTCGTTGATCGAACAGGTCGGCTTCTTTCAGGTCAGAAACTCGAAAGGCCTTCTCTCCTGCAGCATACGCTAAATCATGAAAGCGCCATTTCAGCGGCTTCATATTTGATTATAGAGACAGTTGCTATTGGTCATTTTCATGTCGCCGTCACGATCTGGCTCTATCTCAATTTAGGCCTCTTTTTGTCTCGAAAAGATCCAAAGATTATCATAAAAATGGAAGGAAGGGGTGTATCAGAATTATATAGAAATGCAAGTGAGGAGCTATTTCTTAAATCTTGGGGGGAAAACTCAATCGGAATGTCAACACCAACCATGGAGATGATGGGATTTAAGAATCTTTCTCAGAGCTTCCGTACAGATAGTGAGGAACTTTTCAAAAGCTGGCTAACAAATGGAGAGAACGTCAACAACTCATCAGGTCCGGCTTATCGCATTCGACAAGCATCAAGAAGGATTTCCTCTGAGATTGTTGACCTGTCTAGTCCTCAGTATGTGGGAAAGCATCAAAAGAGAATAATTAATGATATTTTACGTCCACAAAGTGCCTCTGTGGCTGATGATGTCTCAGGAGTTAATCAACAAGTGTTCAGGAATATTGTTGAAGGTGAAGTGCAAGGTAGTAACCTATATCTTGCTAAGGCATGGTTCCATAGTTCTCAACCTATGACAAGAAGTCGATCATCTGAGCTAAGGAGGAGGTACGCTGCAATGCAAAGCAATCAAAGCTCATTTGGTATCCAGTCCATTTATGACTTGTCAGGGCATGCAATGAAACTAGATGTTGCATACTCGCAGGGTTTCAATGACCTTTCTACTTGTGAGGTTCCAAACCAGCCTGTAACATTTGCATCCCCATCCAATTCATCGGCATCGACATTCAATGCATCTAACATTTTCAATAGAAGCAGTAACAATTATTTACATCAAACACCAAACTATCTTCTGGAAGTCTCTCCTGTTCAAGTCAAGGATAATAGAATTTTGGAAACGGTTGGGCTATCAACAGATATTGATTTCAAAGCTTTTGTAAATCCTGTAAATCCTGTAAATCCCGTACAGTCAGGTAGAGTTTCTCAAGAGCCTTCTCAAAGTGAATCTTCTGCTGCAGCAGCAGTAGTTTCATCCGGGTTTGAGGCATATGATGGTCCTAGCAACTCAAATCAAACTCATAGCAACAGTGAGAGCTCAAGGAAACAAGTTGAAAATGGATCTCGATCAAAAGATTTCAGAGAAAGAATAATAGACAACTTGAAAGATGATAGAAAGAGGGGAAGTTTAGTCCGTAATGGGTCCGTAACATCAGCTGTTTCAGTGGACAAAGGGGATCCCACAAAAAAGCGTCGGGTGGAACGATCACGAAAAATGGCAGAGGCGAAAGAGAGAAATATGACACCAACTATTCCATCAGATATGCAATCAGTTCTGAAGCGGTGTGATACTCTTGAGAAGGAAGTGCGGTCACTGAAGCTCAATTTGTCCTTTATGAATAGGAAGGATTCTGAGCAGACTAAGCAGATAGAGGATCTTCAAAAGCAGAATGAGGACTTGGCAGATGAAAAGGAACGCCTGCTTGAAGAGATTGAAAGGATTCTCTCAGAAACTGGAAGAATGTAA

Protein sequence

MDVKNPNEKPRNSLVDRTGRLLSGQKLERPSLLQHTLNHESAISAASYLIIETVAIGHFHVAVTIWLYLNLGLFLSRKDPKIIIKMEGRGVSELYRNASEELFLKSWGENSIGMSTPTMEMMGFKNLSQSFRTDSEELFKSWLTNGENVNNSSGPAYRIRQASRRISSEIVDLSSPQYVGKHQKRIINDILRPQSASVADDVSGVNQQVFRNIVEGEVQGSNLYLAKAWFHSSQPMTRSRSSELRRRYAAMQSNQSSFGIQSIYDLSGHAMKLDVAYSQGFNDLSTCEVPNQPVTFASPSNSSASTFNASNIFNRSSNNYLHQTPNYLLEVSPVQVKDNRILETVGLSTDIDFKAFVNPVNPVNPVQSGRVSQEPSQSESSAAAAVVSSGFEAYDGPSNSNQTHSNSESSRKQVENGSRSKDFRERIIDNLKDDRKRGSLVRNGSVTSAVSVDKGDPTKKRRVERSRKMAEAKERNMTPTIPSDMQSVLKRCDTLEKEVRSLKLNLSFMNRKDSEQTKQIEDLQKQNEDLADEKERLLEEIERILSETGRM

Homology

[Close]

BLAST of CmaCh16G012170 vs. ExPASy Swiss-Prot
Match: A9XMT4 (Protein CYCLOPS OS=Pisum sativum OX=3888 GN=IPD3 PE=2 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.1e-117
Identity = 270/519 (52.02%), Postives = 339/519 (65.32%), Query Frame = 0


Query: 86  MEGRGVSELYRNASEELFLKSWGENSIGMSTPTMEMMGFKNLSQSFRTDSEELFKSWLTN 145
           MEGRG S LY+N+SEELFLK+  E+ IGM  PTMEM+GFK +SQSFR DSEELFK WLTN
Sbjct: 1   MEGRGFSGLYKNSSEELFLKTVMESPIGMPVPTMEMLGFKTVSQSFRADSEELFKRWLTN 60

Query: 146 GENVNNSS-GPAYRIRQASRRISSEIVDLSSPQYVGKHQKRIINDILRPQSASVADDVSG 205
            E  N++S G   R+   S+RIS+E+V++S+ Q+VG   +   ND    Q++ + +DVSG
Sbjct: 61  EEGYNSTSMGLNSRL---SKRISTELVNVSNQQHVGVASEGRNNDKSCLQNSFLTNDVSG 120

Query: 206 VNQQVFRNIVEGEVQGSNLYLAKAWFHSSQPMTRSRSSELRRRYAAMQSNQSSFGIQSIY 265
                 R  V+ E+Q  NL+LAKAWF + Q MTRSRSSELRRRY  MQ+ Q+  G+ S++
Sbjct: 121 DFNFPIREPVDRELQSGNLFLAKAWFLTDQRMTRSRSSELRRRYTEMQNTQAPQGLDSMF 180

Query: 266 DLSGH---AMKLDVAYSQGFNDLSTCEVPNQPVTFASPSNSSASTFNASNI--------- 325
               H    +K ++A+  GF+ LS CE+P+Q  +F SPSNSS+STFN   +         
Sbjct: 181 MAPKHDANIIKEELAHFNGFDYLSMCEIPSQKGSFMSPSNSSSSTFNTQQLVDVDKVSSC 240

Query: 326 ----------------------------------------FNRSSNNYLHQTPNYLLEVS 385
                                                   FN    N+ HQ    +    
Sbjct: 241 VSMLKGTLQRKRLECQVEKDAAEDGLNEIFGIREPLFQSGFNEGQENWNHQKLVNVQGDF 300

Query: 386 PVQVKDNRILETVGLSTDIDFKAFVNPVNPVNPVQSGRVSQEPSQSESSAAAAVVSSGFE 445
             QVKD  ++ET+  + +   + F N  + ++    G  S EPSQSESSAAA V+SSG +
Sbjct: 301 TDQVKDTGVIETLEGAANFVLEGFANQTSQIH---GGTASGEPSQSESSAAAPVISSGLD 360

Query: 446 AYDGPSNSNQTHSNSESSRKQVENGSRSKDFRERIIDNLKDDRKRGSLVRNGSVTSAVSV 505
           A +GPSNS+QT  +S   +      +R+K  RE+I+DNLKDDRKR  L R GSVTSAVS 
Sbjct: 361 ACEGPSNSSQTLCDSSWKQVGESTQNRAKGVREQIMDNLKDDRKRKRLERYGSVTSAVSD 420

Query: 506 DKGDPTKKRRVERSRKMAEAKERNMTPTIPSDMQSVLKRCDTLEKEVRSLKLNLSFMNRK 552
           DK D TKKRRVERSRKMAEAKERN+TPTIPSDMQ+V+KRC+ LEKEVRSLKLNLSFMNRK
Sbjct: 421 DKVDTTKKRRVERSRKMAEAKERNLTPTIPSDMQAVMKRCENLEKEVRSLKLNLSFMNRK 480

[Close]

BLAST of CmaCh16G012170 vs. ExPASy Swiss-Prot
Match: A9XMT3 (Protein CYCLOPS OS=Lotus japonicus OX=34305 GN=IPD3 PE=1 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 7.1e-117
Identity = 282/526 (53.61%), Postives = 341/526 (64.83%), Query Frame = 0


Query: 86  MEGRGVSELYRNASEELFLKSWGENSIGMSTPTMEMMGFKNLSQSFRTDSEELFKSWLTN 145
           MEGRG S LYRN+SEELFLK+  E+ IGM  P+MEM+GFKN+SQ FR DSEELFK WLTN
Sbjct: 1   MEGRGFSGLYRNSSEELFLKTVMESPIGMPVPSMEMLGFKNVSQGFRADSEELFKRWLTN 60

Query: 146 GENVNNSS-GPAYRIRQASRRISSEIVDLSSPQYVGKHQKRIINDILRPQSASVADDVSG 205
           GE  N+SS G + R+   S+RIS+E+V+ S+   VG       ND    Q+  +A+DVSG
Sbjct: 61  GEGYNSSSIGFSSRL---SKRISTELVNGSNQLQVGVASDGRNNDKPFIQNNLLANDVSG 120

Query: 206 VNQQVFRNIVEGEVQGSNLYLAKAWFHSSQPMTRSRSSELRRRYAAMQSNQSSFGIQSIY 265
                 R+ V+ E+Q SNL+LAKAWF S Q MTRSRSSELRRRY+ MQ+  ++ GI+SI 
Sbjct: 121 DFNFPIRDPVDRELQPSNLFLAKAWFLSDQRMTRSRSSELRRRYSEMQNGLATQGIESIC 180

Query: 266 DLSGH---AMKLDVAYSQGFNDLSTCEVPNQPVTFASPSNSSASTFNASNI--------- 325
               H   A K +VA   G+N LS CE+P+Q  +F SPSNS +S FN             
Sbjct: 181 MDPQHGAEATKQEVANFNGYNYLSMCELPSQKGSFMSPSNSCSSNFNTPQFGDMDKVSSC 240

Query: 326 ----------------------------------------FNRSSNNYLHQTPNYLLEVS 385
                                                   F++   N+ +QTP  +   S
Sbjct: 241 VSMLKGTLQRRRLSSQLEKEAAEDDLNGIFYPQEPLFQTGFDQGQENWSNQTPVNVQVDS 300

Query: 386 PVQVKDNRILETVGLSTDIDFKAFVNPVNPVNPVQSGRVSQEPSQSESSAAAAVVSSGFE 445
             +VKD+ +L+T+  ST+     F    N +N +  G  S EPSQSESS AA V+SSG +
Sbjct: 301 IGEVKDHGVLQTLEGSTNPVVDGF---ANQINQIYVGTASGEPSQSESSNAAPVISSGLD 360

Query: 446 AYDGPSNSNQTHSNSESSRKQV-------ENGSRSKDFRERIIDNLKDDRKRGSLVRNGS 505
             +GP NSNQT    ESS KQV          +R K FRE+I+DNLKDD+KR SL R GS
Sbjct: 361 TCEGPINSNQT--LCESSWKQVGVSKSSENTQNRVKGFREQIMDNLKDDKKRKSLERYGS 420

Query: 506 VTSAVSVDKGDPTKKRRVERSRKMAEAKERNMTPTIPSDMQSVLKRCDTLEKEVRSLKLN 552
           +TSAVS DKGD TKKRRVERSRKMAEAKERN TP++PSDMQ+VLKRC+ LEKEVRSLKLN
Sbjct: 421 ITSAVSDDKGDTTKKRRVERSRKMAEAKERNSTPSVPSDMQAVLKRCENLEKEVRSLKLN 480

[Close]

BLAST of CmaCh16G012170 vs. ExPASy Swiss-Prot
Match: A7TUE1 (Protein CYCLOPS OS=Medicago truncatula OX=3880 GN=IPD3 PE=1 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 1.2e-116
Identity = 276/519 (53.18%), Postives = 338/519 (65.13%), Query Frame = 0


Query: 86  MEGRGVSELYRNASEELFLKSWGENSIGMSTPTMEMMGFKNLSQSFRTDSEELFKSWLTN 145
           MEGRG S LY+N+SEELFLK+  E+ IGM  PTMEM+GFK +SQSFRTDSEELFK WLTN
Sbjct: 1   MEGRGFSGLYKNSSEELFLKTVMESPIGMPVPTMEMLGFKTVSQSFRTDSEELFKRWLTN 60

Query: 146 GENVNNSSGPAYRIRQASRRISSEIVDLSSPQYVGKHQKRIINDILRPQSASVADDVSGV 205
            +   NSS      R  S+RIS+EI ++S+ Q++G   +   ND    Q+  +A+DVS  
Sbjct: 61  DQEGYNSSSMGLNSR-LSKRISTEIANMSNQQHIGVASEGRNNDKSCLQNNFLANDVSSD 120

Query: 206 NQQVFRNIVEGEVQGSNLYLAKAWFHSSQPMTRSRSSELRRRYAAMQSNQSSFGIQSIYD 265
                R+ V+ E+Q SNL+LAKAWF + Q MTRSRSSELRRRY  MQ++Q+  G+ S++ 
Sbjct: 121 FNFPIRDPVDRELQSSNLFLAKAWFITDQRMTRSRSSELRRRYTEMQNSQAPQGLDSMFM 180

Query: 266 LSGH---AMKLDVAYSQGFNDLSTCEVPNQPVTFASPSNSSASTFNASN----------- 325
           +  H    +K ++A   GF+ LS CE+P+Q  TF SPSNSS+STFN              
Sbjct: 181 VPEHDTNTIKEELANFNGFDYLSMCELPSQKGTFMSPSNSSSSTFNTHQLVDVDKVSSCV 240

Query: 326 ----------------------------------IFNRSSNNYLHQTPNYLLEVS---PV 385
                                             +F  + N         L+ V      
Sbjct: 241 SMLKGTLQRKKLECQVEKEAAEDGLNEIFCIREPLFQSAFNEEESWNQQKLVNVQGDFTD 300

Query: 386 QVKDNRILETVGLSTDIDFKAFVNPVNPVNPVQSGRVSQEPSQSESSAAAAVVSSGFEAY 445
           QV D  +++T+  +T+     F    N  N +Q    S EPSQSESSAAA V+SSG +A 
Sbjct: 301 QVNDPGVMQTLEGTTNFVLDGF---ANQTNQIQGRTASGEPSQSESSAAAPVISSGLDAC 360

Query: 446 DGPSNSNQTHSNSESSRKQVENGSRSK--DFRERIIDNLKDDRKRGSLVRNGSVTSAVSV 505
           +GPSNSNQT    +SS KQV   +++K    RE+I+DNLKDDRKR SL R GSVTSAVS 
Sbjct: 361 EGPSNSNQT--LGDSSWKQVGESTQNKVRGVREQIMDNLKDDRKRKSLERYGSVTSAVSD 420

Query: 506 DKGDPTKKRRVERSRKMAEAKERNMTPTIPSDMQSVLKRCDTLEKEVRSLKLNLSFMNRK 552
            K D TKKRRVERSRKMAEAKERN+TPTIPSDMQ++LKRC+ LEKEVRSLKLNLSFMNRK
Sbjct: 421 GKMDNTKKRRVERSRKMAEAKERNLTPTIPSDMQAILKRCENLEKEVRSLKLNLSFMNRK 480

[Close]

BLAST of CmaCh16G012170 vs. ExPASy Swiss-Prot
Match: A9XMT5 (Protein CYCLOPS OS=Oryza sativa subsp. japonica OX=39947 GN=IPD3 PE=2 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.1e-98
Identity = 253/514 (49.22%), Postives = 316/514 (61.48%), Query Frame = 0


Query: 86  MEGRGVSELYRNASEELFLKSWGENSIGM--STPTMEMMGFKNLSQSFRTDSEELFKSWL 145
           MEGRG+SEL+RN SE++FLK+  ENS+G+  + P+MEMMGF+NLSQ FR DSEELF SWL
Sbjct: 1   MEGRGLSELFRNTSEDMFLKAMMENSMGVAAAAPSMEMMGFRNLSQGFREDSEELFNSWL 60

Query: 146 TNGENVNNSSGPAYRIRQASRRISSEIVDLSSPQYVGKHQKRIINDILRPQSASVADDVS 205
            NGE +   S    R RQ S R+SSE     + Q+    Q+    D L PQ+ +V  + +
Sbjct: 61  MNGE-IPGFSAMNNRPRQPS-RLSSEAAGFPNQQH-EIAQEHFPTDNLIPQNLAVHSEFT 120

Query: 206 -GVNQQVFRNIVEGEVQGSNLYLAKAWFHSSQPMTRSRSSELRRRYAAMQSNQSSFGIQS 265
              NQQ  +N  E  +Q S+L LAKAWFHS+QPMTRSRSSELR+RYAAMQSN      ++
Sbjct: 121 MNHNQQQLKNAAEKGMQASDLLLAKAWFHSTQPMTRSRSSELRKRYAAMQSNMPPITTET 180

Query: 266 IYDLSGHAMKLDVAYSQGFNDLSTCEVPNQPVTFASPSNSSASTFNASNIFNRSS----- 325
           I   + + ++ D+  +   N       P+Q  TF SPS+SS S  +  +I  + +     
Sbjct: 181 IE--TANKLRQDLTNASTVNSAPMSNTPSQTPTFVSPSSSSTSPLDNPHIVAQDTITSVV 240

Query: 326 -----------------------------------NNYLHQTPNYLLEVSPVQVKDNRIL 385
                                               N L  T  + L V+  Q++D+ +L
Sbjct: 241 SMLKDTLERKKLSSHANGDTSSGISFGFYDSQHFQQNILGGTDIFPL-VTTSQIQDSVML 300

Query: 386 ETVGLSTDIDFKAFVNPVNPVNPVQSGRVSQEPSQSESSAAAAVVSSGFEAYDGPSNSNQ 445
             V   T+   +   N V P N V  G  S+EPSQS SS A    S+GFE  D      Q
Sbjct: 301 PKVERPTE---QGSGNFVAPANQVWLGTASREPSQSGSSTAIPAPSAGFEVCDDLPPIGQ 360

Query: 446 THSNSESSRKQVENG-------SRSKDFRERII-DNLKDDRKRGSLVRNGSVTSAVSVDK 505
             +  ES+R    NG       S+ KDFRERI+ +NLKDDRK+GSL R GS++S    DK
Sbjct: 361 AMTVCESTRTNAANGNGTADCRSKGKDFRERILKENLKDDRKKGSLTRMGSISSE-QADK 420

Query: 506 GDPTKKRRVERSRKMAEAKERNMTPTIPSDMQSVLKRCDTLEKEVRSLKLNLSFMNRKDS 549
           GDPTKKRRVERSRKMAEAKER+ TP IPSD+Q VLKRC+TLEKEVRSLKLNLSFMNRKDS
Sbjct: 421 GDPTKKRRVERSRKMAEAKERSSTPVIPSDIQVVLKRCETLEKEVRSLKLNLSFMNRKDS 480

The following BLAST results are available for this feature:

BLAST of CmaCh16G012170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9XMT4	1.1e-117	52.02	Protein CYCLOPS OS=Pisum sativum OX=3888 GN=IPD3 PE=2 SV=1	[more]
A9XMT3	7.1e-117	53.61	Protein CYCLOPS OS=Lotus japonicus OX=34305 GN=IPD3 PE=1 SV=1	[more]
A7TUE1	1.2e-116	53.18	Protein CYCLOPS OS=Medicago truncatula OX=3880 GN=IPD3 PE=1 SV=1	[more]
A9XMT5	1.1e-98	49.22	Protein CYCLOPS OS=Oryza sativa subsp. japonica OX=39947 GN=IPD3 PE=2 SV=1	[more]

BLAST of CmaCh16G012170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 485..547
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 414..440
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 363..385
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 393..413
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 363..474
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 454..474
IPR040036	Protein CYCLOPS	PANTHER	PTHR36890	PROTEIN CYCLOPS	coord: 85..312 coord: 312..551

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G012170.1	CmaCh16G012170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0036377	arbuscular mycorrhizal association
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding