CmaCh16G012160 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G012160
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Replication protein A subunit
Location	Cma_Chr16: 9204013 .. 9206444 (-)
RNA-Seq Expression	CmaCh16G012160
Synteny	CmaCh16G012160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCAGTTTCCGTCGCAAATCCATGGCGCTTCCCCACTTTCTTCTTAGGGCTATAACTTTCTGTAACTGATCCCCCCTCGTTCTCCCCCAATTATCTTCCATTCGGTTCATCATTTTCGGATTCAATTCCAATATCTCCGATTGAAGTTTCATTTTTAGAGAATGAATTAAAGTCTTCGTTAGGTGTTCTTGAAATGGCAGCATCAATGGCGCCTTTTAAGCTGACGGAAGGAGCAGTGATGGTGATATGCAAGCGAGAATCGTCGGAAGAGACGTTCCAGCCGGTTGTACAAGTAATTGACTTAAAATTTGTTAACACTACGCAACAATCGGGCAGCGAGAGGTACAGATTGTTGCTTTCTGATGGAACTCATTACCAGCAAGGAATGCTGGGCACTCAGCTCAATGGATTGGTTAAGTCCGGGAAGTTACAGAAAGGTTCCATCGTTCAATTGCGGCAGTATGTTTGTAATCCCGTTCAAGAACGCCTGTAAGTCTTTCTATGAACTGAATCATGAATTTTGATATTTGATTTCCGTGAACTAATTGAGTGCATTCTATTTTGAAGAATATCCACATTTCCCTTTTAAGTTTCTAAATCAAACGAGGCAATTAGATGATGGATGAACTCAACCAACCATACAATATACTTTAGGTCAATCTGGATATTATTCTACATGCTCTTTATGAATTGTTAAATTCAATCACAGAATTATAATCGTCATTGAGTTGGATGTGATAAAGGAAATGTGTGACTTTATTGGCGAGCCTGTTCCAGCAACAAGATCAGTATCAGCCGCATTTAGTGGAAACCCTCAATCCTCTGTGGGGGCTTCATCCGGCAGCGGAATAGTTGGTAATGTGAATGTATCTGGTGCGTCTTTTGAACAGCCTAAAGTGAATCAATCACAAGTACCGCATGTGGGATTTCATTTTAATACTCCTAATTCTGGAACAAGGTTTAATGGTTCATCTCCTGTAACTGGGTCATATGGTGATCAGAAGATGGCATACCACAACAATGGATCGGATATTCCCAGGTCACCTCTAAATGCTTATGCTTATGCCCCTCCTCAGCCAATACATCAGCAGCCACCTTCAATGTACAGTAATAGGGGAGGACCGGTAGCAAAAAATGAAGCTCCCCCAAGGATAATGCCTATTACTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCGAAAGGAGAACTTAGAGACTACAATAATCCTCGTGGAGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCATACGGTGGAGAAATACGAGCAACATGCTTCGATATGGTAGCTGATCAGTTTTACAACCAGATTGAATCGGGTAACGTATACTTCATTTCTAAAGGAAGCTTGAAACCTGCACAGAAGAACTATAACCATCTCAATAATGACTTTGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCATCAGCAGTTTCATTTCCATCACATTAGTGAGATTGAGGGCATGGACAGCAACAGTGTTGTAGATGTAATTGGTGTTGTTTCTTCCATTAATCCTGCAACGTCTCTCATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAAAAATTGCAAAACATGTGCGACTCGGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTAGAGTGAGCAACTTCAATGGGAAGGCGGTGGGAACCATTTCAACAAGTCAGCTTTTCGTAGAGCCAGATTTCCCCGAGGCTCGTACATTAAGAGGGTGGTTCGAAAAGGAAGGAAGGAGCACTCCTTCTGTCTCCATATCCAGGGAAGTTGCTACCGTGGGTAGGACAGATGCCCGTCAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACTGTTAGTGCAACTGTTTCATTCATTAAGGTTGATAATTTCTGTTACACAGCATGTCCTATCATGATCGGGGATCGTCAATGCAGCAAAAAGGTTACAAATAACGGAGATGGAAAATGGAGATGCGACCGGTGTGATCAGTCTGTCGACGAATGTGACTACAGGTACATATTGCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTGACAGCATTTCAAGAAGGCGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTACTATTTGAAATACGAAGAACAAGATGATGAAAAATTTGCAGAAATCATCCGTAAAGTTCTTTTTACAAAATTTATTATGAAGTTGAAAGTAAAGGAAGAGACTTTTAGTGATGAACAGAGTGAAATCAACGGTCATGAAAGCAGAAAGCATTAA

mRNA sequence

CGCAGTTTCCGTCGCAAATCCATGGCGCTTCCCCACTTTCTTCTTAGGGCTATAACTTTCTGTAACTGATCCCCCCTCGTTCTCCCCCAATTATCTTCCATTCGGTTCATCATTTTCGGATTCAATTCCAATATCTCCGATTGAAGTTTCATTTTTAGAGAATGAATTAAAGTCTTCGTTAGGTGTTCTTGAAATGGCAGCATCAATGGCGCCTTTTAAGCTGACGGAAGGAGCAGTGATGGTGATATGCAAGCGAGAATCGTCGGAAGAGACGTTCCAGCCGGTTGTACAAGTAATTGACTTAAAATTTGTTAACACTACGCAACAATCGGGCAGCGAGAGGTACAGATTGTTGCTTTCTGATGGAACTCATTACCAGCAAGGAATGCTGGGCACTCAGCTCAATGGATTGGTTAAGTCCGGGAAGTTACAGAAAGGTTCCATCGTTCAATTGCGGCAGTATGTTTGTAATCCCGTTCAAGAACGCCTAATTATAATCGTCATTGAGTTGGATGTGATAAAGGAAATGTGTGACTTTATTGGCGAGCCTGTTCCAGCAACAAGATCAGTATCAGCCGCATTTAGTGGAAACCCTCAATCCTCTGTGGGGGCTTCATCCGGCAGCGGAATAGTTGGTAATGTGAATGTATCTGGTGCGTCTTTTGAACAGCCTAAAGTGAATCAATCACAAGTACCGCATGTGGGATTTCATTTTAATACTCCTAATTCTGGAACAAGGTTTAATGGTTCATCTCCTGTAACTGGGTCATATGGTGATCAGAAGATGGCATACCACAACAATGGATCGGATATTCCCAGGTCACCTCTAAATGCTTATGCTTATGCCCCTCCTCAGCCAATACATCAGCAGCCACCTTCAATGTACAGTAATAGGGGAGGACCGGTAGCAAAAAATGAAGCTCCCCCAAGGATAATGCCTATTACTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCGAAAGGAGAACTTAGAGACTACAATAATCCTCGTGGAGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCATACGGTGGAGAAATACGAGCAACATGCTTCGATATGGTAGCTGATCAGTTTTACAACCAGATTGAATCGGGTAACGTATACTTCATTTCTAAAGGAAGCTTGAAACCTGCACAGAAGAACTATAACCATCTCAATAATGACTTTGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCATCAGCAGTTTCATTTCCATCACATTAGTGAGATTGAGGGCATGGACAGCAACAGTGTTGTAGATGTAATTGGTGTTGTTTCTTCCATTAATCCTGCAACGTCTCTCATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAAAAATTGCAAAACATGTGCGACTCGGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTAGAGTGAGCAACTTCAATGGGAAGGCGGTGGGAACCATTTCAACAAGTCAGCTTTTCGTAGAGCCAGATTTCCCCGAGGCTCGTACATTAAGAGGGTGGTTCGAAAAGGAAGGAAGGAGCACTCCTTCTGTCTCCATATCCAGGGAAGTTGCTACCGTGGGTAGGACAGATGCCCGTCAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACTGTTAGTGCAACTGTTTCATTCATTAAGGTTGATAATTTCTGTTACACAGCATGTCCTATCATGATCGGGGATCGTCAATGCAGCAAAAAGGTTACAAATAACGGAGATGGAAAATGGAGATGCGACCGGTGTGATCAGTCTGTCGACGAATGTGACTACAGGTACATATTGCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTGACAGCATTTCAAGAAGGCGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTACTATTTGAAATACGAAGAACAAGATGATGAAAAATTTGCAGAAATCATCCGTAAAGTTCTTTTTACAAAATTTATTATGAAGTTGAAAGTAAAGGAAGAGACTTTTAGTGATGAACAGAGTGAAATCAACGGTCATGAAAGCAGAAAGCATTAA

Coding sequence (CDS)

ATGGCAGCATCAATGGCGCCTTTTAAGCTGACGGAAGGAGCAGTGATGGTGATATGCAAGCGAGAATCGTCGGAAGAGACGTTCCAGCCGGTTGTACAAGTAATTGACTTAAAATTTGTTAACACTACGCAACAATCGGGCAGCGAGAGGTACAGATTGTTGCTTTCTGATGGAACTCATTACCAGCAAGGAATGCTGGGCACTCAGCTCAATGGATTGGTTAAGTCCGGGAAGTTACAGAAAGGTTCCATCGTTCAATTGCGGCAGTATGTTTGTAATCCCGTTCAAGAACGCCTAATTATAATCGTCATTGAGTTGGATGTGATAAAGGAAATGTGTGACTTTATTGGCGAGCCTGTTCCAGCAACAAGATCAGTATCAGCCGCATTTAGTGGAAACCCTCAATCCTCTGTGGGGGCTTCATCCGGCAGCGGAATAGTTGGTAATGTGAATGTATCTGGTGCGTCTTTTGAACAGCCTAAAGTGAATCAATCACAAGTACCGCATGTGGGATTTCATTTTAATACTCCTAATTCTGGAACAAGGTTTAATGGTTCATCTCCTGTAACTGGGTCATATGGTGATCAGAAGATGGCATACCACAACAATGGATCGGATATTCCCAGGTCACCTCTAAATGCTTATGCTTATGCCCCTCCTCAGCCAATACATCAGCAGCCACCTTCAATGTACAGTAATAGGGGAGGACCGGTAGCAAAAAATGAAGCTCCCCCAAGGATAATGCCTATTACTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCGAAAGGAGAACTTAGAGACTACAATAATCCTCGTGGAGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCATACGGTGGAGAAATACGAGCAACATGCTTCGATATGGTAGCTGATCAGTTTTACAACCAGATTGAATCGGGTAACGTATACTTCATTTCTAAAGGAAGCTTGAAACCTGCACAGAAGAACTATAACCATCTCAATAATGACTTTGAAATATTTCTTGAAAACACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCATCAGCAGTTTCATTTCCATCACATTAGTGAGATTGAGGGCATGGACAGCAACAGTGTTGTAGATGTAATTGGTGTTGTTTCTTCCATTAATCCTGCAACGTCTCTCATGAGAAAAAATGGTACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGCCGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAAAAATTGCAAAACATGTGCGACTCGGGGTTGTTCCCAGTTTTGGCTGTGAAATCTGGTAGAGTGAGCAACTTCAATGGGAAGGCGGTGGGAACCATTTCAACAAGTCAGCTTTTCGTAGAGCCAGATTTCCCCGAGGCTCGTACATTAAGAGGGTGGTTCGAAAAGGAAGGAAGGAGCACTCCTTCTGTCTCCATATCCAGGGAAGTTGCTACCGTGGGTAGGACAGATGCCCGTCAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATCACTGTTAGTGCAACTGTTTCATTCATTAAGGTTGATAATTTCTGTTACACAGCATGTCCTATCATGATCGGGGATCGTCAATGCAGCAAAAAGGTTACAAATAACGGAGATGGAAAATGGAGATGCGACCGGTGTGATCAGTCTGTCGACGAATGTGACTACAGGTACATATTGCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTGACAGCATTTCAAGAAGGCGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTACTATTTGAAATACGAAGAACAAGATGATGAAAAATTTGCAGAAATCATCCGTAAAGTTCTTTTTACAAAATTTATTATGAAGTTGAAAGTAAAGGAAGAGACTTTTAGTGATGAACAGAGTGAAATCAACGGTCATGAAAGCAGAAAGCATTAA

Protein sequence

MAASMAPFKLTEGAVMVICKRESSEETFQPVVQVIDLKFVNTTQQSGSERYRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEPVPATRSVSAAFSGNPQSSVGASSGSGIVGNVNVSGASFEQPKVNQSQVPHVGFHFNTPNSGTRFNGSSPVTGSYGDQKMAYHNNGSDIPRSPLNAYAYAPPQPIHQQPPSMYSNRGGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRDYNNPRGDGKVFSFDLLDAYGGEIRATCFDMVADQFYNQIESGNVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQPCFEDDQSIPHQQFHFHHISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQKLQNMCDSGLFPVLAVKSGRVSNFNGKAVGTISTSQLFVEPDFPEARTLRGWFEKEGRSTPSVSISREVATVGRTDARQTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKVKEETFSDEQSEINGHESRKH

Homology

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BLAST of CmaCh16G012160 vs. ExPASy Swiss-Prot
Match: Q9FHJ6 (Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana OX=3702 GN=RPA1C PE=3 SV=1)

HSP 1 Score: 752.7 bits (1942), Expect = 3.6e-216
Identity = 399/710 (56.20%), Postives = 489/710 (68.87%), Query Frame = 0


Query: 10  LTEGAVMVICKRESSEET-FQPVVQVIDLKFVNT---TQQSGSERYRLLLSDGTHYQQGM 69
           LTEG VM +   E + ET   PV+QV +LK + +     Q  S RY+ LLSDGT    GM
Sbjct: 5   LTEGVVMKMLNGEVTSETDMMPVLQVTELKLIQSKLHQNQESSNRYKFLLSDGTDLAAGM 64

Query: 70  LGTQLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEP-VPATR 129
           L T LN LV  G +Q GS+++L  Y+CN +Q R I+++++L+VI E C+ IG P  P   
Sbjct: 65  LNTSLNSLVNQGTIQLGSVIRLTHYICNLIQTRRIVVIMQLEVIVEKCNIIGNPKEPGHS 124

Query: 130 SVSAAFSG-NPQSSVGASSGSGIVGNVNVS----GASFEQPKV----------------N 189
           S++    G N QS+ G+        +VN       A+  QP+V                 
Sbjct: 125 SINPQRGGVNTQSNGGSEQQQARRSDVNGGRYGVSANSPQPQVVHNSSDAGRYCVSANSP 184

Query: 190 QSQVPH-------VGFHFNTP-----------------------NSGTRFNGSSPVTGSY 249
           Q QV H        G   N+P                        +G+ +  +SP T  Y
Sbjct: 185 QPQVVHSSSDAGRYGVSANSPQRQVVHNSPDAGRYGQPQVSQRYGTGSGYPETSPSTRPY 244

Query: 250 GDQKMAYHNNGSDIPRSPLNAYAYAPPQPIHQQP--PSMYSNRGGPVAKNEAPPRIMPIT 309
                 Y  +  D PR+P    AY+ P     QP  P MY NR GPVA+NEAPPRI PI 
Sbjct: 245 VSSNAGYGGSRQDQPRAPTATTAYSRPVQSAYQPQQPPMYVNR-GPVARNEAPPRINPIA 304

Query: 310 ALNPYQGRWTIKARVTSKGELRDYNNPRGDGKVFSFDLLDAYGGEIRATCFDMVADQFYN 369
           ALNPYQGRWTIK RVTSK +LR +NNPRG+GK+FSFDLLDA GGEIR TCF+   DQF++
Sbjct: 305 ALNPYQGRWTIKVRVTSKADLRRFNNPRGEGKLFSFDLLDADGGEIRVTCFNDAVDQFFD 364

Query: 370 QIESGNVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQPCFEDDQSIPHQQFHFHHIS 429
           +I  GNVY IS+G+LKPAQKN+NHL ND+EI L++ STIQPC EDD +IP   FHF +I 
Sbjct: 365 KIVVGNVYLISRGNLKPAQKNFNHLPNDYEIHLDSASTIQPC-EDDGTIPRYHFHFRNIG 424

Query: 430 EIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQA 489
           +IE M++NS  DVIG+VSSI+P  ++MRKN TE QKRSLQLKDMSGRSVE+T+WGNFC A
Sbjct: 425 DIENMENNSTTDVIGIVSSISPTVAIMRKNLTEVQKRSLQLKDMSGRSVEVTMWGNFCNA 484

Query: 490 EGQKLQNMCDSGLFPVLAVKSGRVSNFNGKAVGTISTSQLFVEPDFPEARTLRGWFEKEG 549
           EGQKLQN+CDSG+FPVLA+K+GR+  FNGK V TI  SQ F+EPDFPEAR LR W+E+EG
Sbjct: 485 EGQKLQNLCDSGVFPVLALKAGRIGEFNGKQVSTIGASQFFIEPDFPEARELRQWYEREG 544

Query: 550 RSTPSVSISREVATVGRTDARQTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTAC 609
           R+    SISRE + VGR + R+ I+QIKDE+LGTSEKPDWITV AT+SF+KV+NFCYTAC
Sbjct: 545 RNAHFTSISREFSGVGRQEVRKVIAQIKDEKLGTSEKPDWITVCATISFMKVENFCYTAC 604

Query: 610 PIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGE 662
           PIM GDR CSKKVTNNGDG WRC++CD+ VDECDYRYILQ+Q+QDHT LTW TAFQE GE
Sbjct: 605 PIMNGDRPCSKKVTNNGDGTWRCEKCDKCVDECDYRYILQIQLQDHTDLTWATAFQEAGE 664

[Close]

BLAST of CmaCh16G012160 vs. ExPASy Swiss-Prot
Match: F4JSG3 (Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana OX=3702 GN=RPA1E PE=2 SV=1)

HSP 1 Score: 752.3 bits (1941), Expect = 4.8e-216
Identity = 386/654 (59.02%), Postives = 486/654 (74.31%), Query Frame = 0


Query: 10  LTEGAVMVICKRE-SSEETFQPVVQVIDLKFVNTTQQSGSERYRLLLSDGTHYQQGMLGT 69
           LT GA+  I   E ++E    PV+QV DLK +   Q    ER+R++LSDGT+  QGMLGT
Sbjct: 5   LTAGAIGKIMNGEVTTEADMIPVLQVTDLKQIMAQQDPTRERFRMVLSDGTYLHQGMLGT 64

Query: 70  QLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEPVPATR-SVS 129
            LN LVK G LQ GSIV+L ++V + ++ R I+IV +L+V+K++ D IG PVP  + +  
Sbjct: 65  DLNNLVKEGTLQPGSIVRLTRFVGDVIKGRRIVIVPQLEVLKQISDIIGHPVPGGKHNDQ 124

Query: 130 AAFSGNPQSSVGASSGSGIVGNVNVSGASFEQPKVNQSQVPHVGFHFNTPNSGTRFNGSS 189
                  + +     GSGI   VN    + E  + N +  P VG   ++  + T     +
Sbjct: 125 RGADSGIKFNTTEQQGSGI-RQVN----NIEPGRSNAAISPQVGGTGSSVPAST-----T 184

Query: 190 PVTGSYGDQKMAYHNNGSDIPRSPLNAYAYAPPQPIHQQPPSMYSNRGGPVAKNEAPPRI 249
           P T +Y +          D  R P  +Y + P     Q PP MY+NR GPVA+NEAPP+I
Sbjct: 185 PSTRAYSNPSSGNGVTRQDYARDPPTSYPHQP-----QPPPPMYANR-GPVARNEAPPKI 244

Query: 250 MPITALNPYQGRWTIKARVTSKGELRDYNNPRGDGKVFSFDLLDAYGGEIRATCFDMVAD 309
           +P+ AL+PY GRWTIKARVT+K  L+ Y+NPRG+GKVF+FDLLDA GGEIR TCF+ VAD
Sbjct: 245 IPVNALSPYSGRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLDADGGEIRVTCFNAVAD 304

Query: 310 QFYNQIESGNVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQPCFEDDQSIPHQQFHF 369
           QFY+QI  GN+Y IS+GSL+PAQKN+NHL ND+EI L+N STI+ C+E+D +IP  QFHF
Sbjct: 305 QFYDQIVVGNLYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCYEEDAAIPRHQFHF 364

Query: 370 HHISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGN 429
             I +IE M++N +VDVIG+VSSI+P  ++ RKNGT T KRSLQLKDMSGRSVE+T+WG+
Sbjct: 365 RTIGDIESMENNCIVDVIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEVTMWGD 424

Query: 430 FCQAEGQKLQNMCDSGLFPVLAVKSGRVSNFNGKAVGTISTSQLFVEPDFPEARTLRGWF 489
           FC AEGQ+LQ++CDSG+FPVLAVK+GR+S FNGK V TI +SQLF++PDF EA  L+ WF
Sbjct: 425 FCNAEGQRLQSLCDSGVFPVLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAEKLKNWF 484

Query: 490 EKEGRSTPSVSISREVATVGRTDARQTISQIKDERLGTSEKPDWITVSATVSFIKVDNFC 549
           E+EG+S P +S+SRE +  G+ D R+TISQIKDE+LGTSEKPDWITVSAT+ ++K DNFC
Sbjct: 485 EREGKSVPCISLSREFSGSGKVDVRKTISQIKDEKLGTSEKPDWITVSATILYLKFDNFC 544

Query: 550 YTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQ 609
           YTACPIM GDR CSKKVT+NGDG WRC++CD+SVDECDYRYILQLQIQDHT LT VTAFQ
Sbjct: 545 YTACPIMNGDRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQ 604

Query: 610 EGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKVKEETFSDEQ 662
           E GEEIMGI AK LYY+K E +D+EKF +IIRKV FTK+  KLKVKEETFSDEQ
Sbjct: 605 EAGEEIMGISAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQ 642

[Close]

BLAST of CmaCh16G012160 vs. ExPASy Swiss-Prot
Match: Q9SKI4 (Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA1A PE=1 SV=1)

HSP 1 Score: 659.8 bits (1701), Expect = 3.2e-188
Identity = 335/657 (50.99%), Postives = 448/657 (68.19%), Query Frame = 0


Query: 7   PFKLTEGAVMVICKRESSEETFQPVVQVIDLKFVNTTQQSGSERYRLLLSDGTHYQQGML 66
           P  LT  A+  I      +   +P++QV+++K +  +Q+   ERYR L+SDG   Q  M+
Sbjct: 2   PVSLTPNAITAI---HDGDVNLKPLLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMV 61

Query: 67  GTQLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEPVPATRSV 126
             QLN  VKSG+ +KGSIVQL  Y+C+ V+ R +I+V+ ++ I +  + IG P       
Sbjct: 62  AVQLNDRVKSGQFEKGSIVQLIDYICSDVKGRKLIVVLNMETIVQQSETIGNP------- 121

Query: 127 SAAFSGNPQSSVGASSGSGIVGNVNVSGASFEQPKVNQSQVPHVGFHFNTPNSGTRFNGS 186
              F      +    SG+G +   N     F +P V  S                  N +
Sbjct: 122 -TIFGETDTEAQKTFSGTGNIPPPN--RVVFNEPMVQHS-----------------VNRA 181

Query: 187 SPVTGSYGDQKMAYHNNGSDIPRSPLNAYAYAPPQPIHQQPPSMYSNRGGPVAKNEAPPR 246
            P               G +I     N  ++ P      QPP+ Y N  GP+ KNEAP R
Sbjct: 182 PP--------------RGVNIQNQANNTPSFRPSVQPSYQPPASYRNH-GPIMKNEAPAR 241

Query: 247 IMPITALNPYQGRWTIKARVTSKGELRDYNNPRGDGKVFSFDLLDAYGGEIRATCFDMVA 306
           ++PI ALNPYQGRW IKARVT+KG++R YNN +GDGKVFSFDLLD  GGEIR TCF+ + 
Sbjct: 242 VIPIAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALV 301

Query: 307 DQFYNQIESGNVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQPCFEDDQSIPHQQFH 366
           D+FY+  E G VY ISKGSLKPAQKN+NHL N++EIFLE+TST++ C ++D SIP QQF 
Sbjct: 302 DRFYDVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFS 361

Query: 367 FHHISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWG 426
           F  IS+IE  ++N+++DVIGVV+S+NP+  ++RKNG ET +R L LKD SG++VE+TLWG
Sbjct: 362 FRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDESGKAVEVTLWG 421

Query: 427 NFCQAEGQKLQNMCDSGLFPVLAVKSGRVSNFNGKAVGTISTSQLFVEPDFPEARTLRGW 486
            FC  +G++L+ M DS   PVLA+K+G+VS+F+GK+VGTIS++QLF+ PDFPEA  LR W
Sbjct: 422 EFCNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTW 481

Query: 487 FEKEGRSTPSVSISREV--ATVGRTDARQTISQIKDERLGTSEKPDWITVSATVSFIKVD 546
           F+  G+ T S SISR+     V R + R+ +SQIK+E LG S+KPDWITV AT+SFIK D
Sbjct: 482 FDYGGKDTASFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTD 541

Query: 547 NFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVT 606
           +FCYTACP+MIGD+QC+KKVT +G  +W CDRC+Q  DECDYRY+LQ+QIQDHTGLTW+T
Sbjct: 542 SFCYTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWIT 601

Query: 607 AFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKVKEETFSDEQ 662
           AFQE GEEIMG PAK+LY +KYE + +E+FAEI+R  LF ++++KLK+KEE++ DEQ
Sbjct: 602 AFQETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQ 613

[Close]

BLAST of CmaCh16G012160 vs. ExPASy Swiss-Prot
Match: Q65XV7 (Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1C PE=1 SV=1)

HSP 1 Score: 606.3 bits (1562), Expect = 4.2e-172
Identity = 331/722 (45.84%), Postives = 453/722 (62.74%), Query Frame = 0


Query: 9   KLTEGAVMVICKRESSEETFQPVVQVIDLKFVNTTQ----QSGSERYRLLLSDGTHYQQG 68
           +LT GAV  I +      T QPV+QV+D++ V T         +ER+R++LSDG + QQ 
Sbjct: 4   QLTPGAVQAIAEHPDGTGTIQPVLQVVDVRPVTTKNAPPTPKPAERFRMMLSDGVNTQQS 63

Query: 69  MLGTQLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEP----- 128
           ML T LN LVK   L+ G++VQL  ++CN +Q + IIIV++LDV++  C  IG P     
Sbjct: 64  MLATALNPLVKDATLRPGTVVQLTDFMCNTIQGKRIIIVVKLDVLQNDCIVIGNPKHYEP 123

Query: 129 -----------------------------------VPATRSVSAAFSGNPQSSVGASSGS 188
                                                A ++ S +  G P +S     GS
Sbjct: 124 KSLTKEQDPNLQASVAQTNNGTYSGGASMLGPSVAPRAEQAASNSSYGGPYNSAQGMLGS 183

Query: 189 GI-----VGNVNVS-----GASFEQPKVNQSQVPHVG----FHFNTPNSGTRFNGSSPVT 248
            I      G  NVS     GA   Q   N + +         + NT    ++ N  +  T
Sbjct: 184 SIGRTVEPGPANVSAVGSYGAISAQNTTNANMMQPTSQLNIMNANTMQPTSQLNTMNANT 243

Query: 249 GSYGDQKMAYHNNGSDIPRSPLNAYAYAPP--------QPIHQQPPSMYSNRGGPVAKNE 308
                Q  + + N +    +P +   + PP        +P +QQPP +Y NR GP ++N+
Sbjct: 244 MQPTSQLSSLNPNQNQRFAAPASGGVFGPPGNAYGQPSRPSYQQPPPVYMNR-GPASRND 303

Query: 309 APPRIMPITALNPYQGRWTIKARVTSKGELRDYNNPRGDGKVFSFDLLDAYGGEIRATCF 368
           +  RI+PITALNPYQ +WTIKARVT+K ++R ++N R  G VFSFDLLDA GGEIRA C+
Sbjct: 304 SATRIIPITALNPYQPKWTIKARVTAKSDIRHWSNARSSGTVFSFDLLDAQGGEIRAQCW 363

Query: 369 DMVADQFYNQIESGNVYFISKGSLKPAQKNYNHLNNDFEIFLE-NTSTIQPCFEDDQSIP 428
              AD+F+ QIE G VY IS+GSLKPAQK YN LN+D+EI L+   ST++ C +DD SIP
Sbjct: 364 KESADKFFGQIEVGRVYLISRGSLKPAQKKYNTLNHDYEITLDIGLSTVEVCSDDDNSIP 423

Query: 429 HQQFHFHHISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVE 488
             Q++F  ISE+E M + ++VD++GVV+S++P+ ++MRK GTET+KRS+QLKD+SGRS+E
Sbjct: 424 RLQYNFRQISELENMANETIVDLLGVVTSVSPSATIMRKIGTETRKRSIQLKDLSGRSIE 483

Query: 489 LTLWGNFCQAEGQKLQNMCDSGLFPVLAVKSGRVSNFNGKAVGTISTSQLFVEPDFPEAR 548
           +TLWGNFC AEGQ+LQ  CDSG  P++A K  RV +FNGK+V TI ++QL + PDFPE  
Sbjct: 484 VTLWGNFCDAEGQQLQLQCDSGSNPIIAFKGARVGDFNGKSVSTIGSTQLIINPDFPEVE 543

Query: 549 TLRGWFEKEGRSTPSVSISREVATVGRTDARQTISQIKDERLGTSEKPDWITVSATVSFI 608
            LR W+  EG++ P +S+SRE+  +GRTDAR+TI+QIKDE LG  EKPDWITV A +S +
Sbjct: 544 RLRQWYMTEGKTAPCISLSREMLNMGRTDARKTIAQIKDENLGRLEKPDWITVKAAISHV 603

Query: 609 KVDNFCYTACPIMIG-DRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGL 663
             ++FCY ACP ++   RQC+KK  NNGDG W CDRCD+S    +YRY+L+ QIQDHTG 
Sbjct: 604 TTESFCYPACPKLLPVGRQCNKKAINNGDGMWHCDRCDESFQNPEYRYMLRFQIQDHTGS 663

[Close]

BLAST of CmaCh16G012160 vs. ExPASy Swiss-Prot
Match: Q6YZ49 (Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1A PE=1 SV=1)

HSP 1 Score: 593.6 bits (1529), Expect = 2.8e-168
Identity = 312/672 (46.43%), Postives = 435/672 (64.73%), Query Frame = 0


Query: 5   MAPFKLTEGAVMVICKRESSEETFQPVVQVIDLK--FVNTTQQSGSERYRLLLSDGTHYQ 64
           MA  +LT   V       + +   +PV+Q+++L+   VN    +  ER+R ++SDGT   
Sbjct: 1   MAMARLTPNGVAAAL---AGDTNLKPVLQIVELRGVQVNGAGVTRGERFRAVVSDGTAAS 60

Query: 65  QGMLGTQLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEPVPA 124
             +   QL+   +SG L++GSIVQL +YV N V  R II+++ L+V+   C+ IG P   
Sbjct: 61  SALFAAQLSDHARSGALRRGSIVQLSEYVINEVGPRRIIVILNLEVLVSECEIIGNPTAL 120

Query: 125 TRSVS--------AAFSGNPQSSVGASSGSGIVGNVNVSGASFEQPKVNQSQVPHVGFHF 184
           + + S          F+G PQ  + A + S      + +   F+                
Sbjct: 121 SETGSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLFQNSMAG----------- 180

Query: 185 NTPNSGTRFNGSSPVTGSYGDQKMAYHNNGSDIPRSPLNAYAYAPPQPIHQQPPSMYSNR 244
           N+ N  TR +   PV                           + P      +P   Y N 
Sbjct: 181 NSSNFATRPSDKVPV---------------------------FQPTVQPSYRPAPNYKNH 240

Query: 245 GGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRDYNNPRGDGKVFSFDLLDAYG 304
           G  + KNEAP RI+PI+ALNPYQGRW IKARVT+KG++R Y+N +GDGKVFSFDLLD+ G
Sbjct: 241 GA-IMKNEAPARIIPISALNPYQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDG 300

Query: 305 GEIRATCFDMVADQFYNQIESGNVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQPCF 364
           GEIR TCF+ + D+FY  +E G VY +S+G+L+PAQKNYNHLNN++EI LEN ST+  C 
Sbjct: 301 GEIRVTCFNALLDRFYEVVEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCP 360

Query: 365 EDDQSIPHQQFHFHHISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKD 424
           +++ SIP Q+F F  I+EIE   +N+++D+IGVV+S+NP T++ RKNG ETQKR++ LKD
Sbjct: 361 DENSSIPTQRFDFRPINEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGMETQKRTMNLKD 420

Query: 425 MSGRSVELTLWGNFCQAEGQKLQNMCDSGLFPVLAVKSGRVSNFNGKAVGTISTSQLFVE 484
           MSGRSVE+T+WG+FC  EG +LQ M + G+FPVLAVK+G+VS+F+GK+VGTIS++QLF+ 
Sbjct: 421 MSGRSVEVTMWGDFCNREGSQLQGMVERGIFPVLAVKAGKVSDFSGKSVGTISSTQLFIN 480

Query: 485 PDFPEARTLRGWFEKEGRSTPSVSISREVAT-VGRTDARQTISQIKDERLGTSEKPDWIT 544
           PD  EA +LR WF+  GR   + SISR++     R + R+T++QIKDE LG  +KPDWIT
Sbjct: 481 PDSAEAHSLRQWFDSGGRDASTQSISRDITPGASRNEIRKTVAQIKDEGLGMGDKPDWIT 540

Query: 545 VSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQ 604
           V ATV F K ++F YTACP MIGDRQC+KKVT + +G W CD+CD+  +ECDYRY+LQ Q
Sbjct: 541 VKATVIFFKNESFFYTACPNMIGDRQCNKKVTKSTNGNWTCDKCDREFEECDYRYLLQFQ 600

Query: 605 IQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKVK 664
           IQDH+G  WVTAFQE G+E++G  A  L  LK  E++D +FA+ +   LF +++++LKVK
Sbjct: 601 IQDHSGTAWVTAFQEAGQELLGCSATELNALK--EREDPRFADTMLNCLFQEYLLRLKVK 628

Query: 665 EETFSDEQSEIN 666
           EE++ DE+   N
Sbjct: 661 EESYGDERKVKN 628

[Close]

BLAST of CmaCh16G012160 vs. TAIR 10
Match: AT5G45400.1 (Replication factor-A protein 1-related )

HSP 1 Score: 752.7 bits (1942), Expect = 2.6e-217
Identity = 399/710 (56.20%), Postives = 489/710 (68.87%), Query Frame = 0


Query: 10  LTEGAVMVICKRESSEET-FQPVVQVIDLKFVNT---TQQSGSERYRLLLSDGTHYQQGM 69
           LTEG VM +   E + ET   PV+QV +LK + +     Q  S RY+ LLSDGT    GM
Sbjct: 5   LTEGVVMKMLNGEVTSETDMMPVLQVTELKLIQSKLHQNQESSNRYKFLLSDGTDLAAGM 64

Query: 70  LGTQLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEP-VPATR 129
           L T LN LV  G +Q GS+++L  Y+CN +Q R I+++++L+VI E C+ IG P  P   
Sbjct: 65  LNTSLNSLVNQGTIQLGSVIRLTHYICNLIQTRRIVVIMQLEVIVEKCNIIGNPKEPGHS 124

Query: 130 SVSAAFSG-NPQSSVGASSGSGIVGNVNVS----GASFEQPKV----------------N 189
           S++    G N QS+ G+        +VN       A+  QP+V                 
Sbjct: 125 SINPQRGGVNTQSNGGSEQQQARRSDVNGGRYGVSANSPQPQVVHNSSDAGRYCVSANSP 184

Query: 190 QSQVPH-------VGFHFNTP-----------------------NSGTRFNGSSPVTGSY 249
           Q QV H        G   N+P                        +G+ +  +SP T  Y
Sbjct: 185 QPQVVHSSSDAGRYGVSANSPQRQVVHNSPDAGRYGQPQVSQRYGTGSGYPETSPSTRPY 244

Query: 250 GDQKMAYHNNGSDIPRSPLNAYAYAPPQPIHQQP--PSMYSNRGGPVAKNEAPPRIMPIT 309
                 Y  +  D PR+P    AY+ P     QP  P MY NR GPVA+NEAPPRI PI 
Sbjct: 245 VSSNAGYGGSRQDQPRAPTATTAYSRPVQSAYQPQQPPMYVNR-GPVARNEAPPRINPIA 304

Query: 310 ALNPYQGRWTIKARVTSKGELRDYNNPRGDGKVFSFDLLDAYGGEIRATCFDMVADQFYN 369
           ALNPYQGRWTIK RVTSK +LR +NNPRG+GK+FSFDLLDA GGEIR TCF+   DQF++
Sbjct: 305 ALNPYQGRWTIKVRVTSKADLRRFNNPRGEGKLFSFDLLDADGGEIRVTCFNDAVDQFFD 364

Query: 370 QIESGNVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQPCFEDDQSIPHQQFHFHHIS 429
           +I  GNVY IS+G+LKPAQKN+NHL ND+EI L++ STIQPC EDD +IP   FHF +I 
Sbjct: 365 KIVVGNVYLISRGNLKPAQKNFNHLPNDYEIHLDSASTIQPC-EDDGTIPRYHFHFRNIG 424

Query: 430 EIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQA 489
           +IE M++NS  DVIG+VSSI+P  ++MRKN TE QKRSLQLKDMSGRSVE+T+WGNFC A
Sbjct: 425 DIENMENNSTTDVIGIVSSISPTVAIMRKNLTEVQKRSLQLKDMSGRSVEVTMWGNFCNA 484

Query: 490 EGQKLQNMCDSGLFPVLAVKSGRVSNFNGKAVGTISTSQLFVEPDFPEARTLRGWFEKEG 549
           EGQKLQN+CDSG+FPVLA+K+GR+  FNGK V TI  SQ F+EPDFPEAR LR W+E+EG
Sbjct: 485 EGQKLQNLCDSGVFPVLALKAGRIGEFNGKQVSTIGASQFFIEPDFPEARELRQWYEREG 544

Query: 550 RSTPSVSISREVATVGRTDARQTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTAC 609
           R+    SISRE + VGR + R+ I+QIKDE+LGTSEKPDWITV AT+SF+KV+NFCYTAC
Sbjct: 545 RNAHFTSISREFSGVGRQEVRKVIAQIKDEKLGTSEKPDWITVCATISFMKVENFCYTAC 604

Query: 610 PIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGE 662
           PIM GDR CSKKVTNNGDG WRC++CD+ VDECDYRYILQ+Q+QDHT LTW TAFQE GE
Sbjct: 605 PIMNGDRPCSKKVTNNGDGTWRCEKCDKCVDECDYRYILQIQLQDHTDLTWATAFQEAGE 664

[Close]

BLAST of CmaCh16G012160 vs. TAIR 10
Match: AT4G19130.1 (Replication factor-A protein 1-related )

HSP 1 Score: 752.3 bits (1941), Expect = 3.4e-217
Identity = 386/654 (59.02%), Postives = 486/654 (74.31%), Query Frame = 0


Query: 10  LTEGAVMVICKRE-SSEETFQPVVQVIDLKFVNTTQQSGSERYRLLLSDGTHYQQGMLGT 69
           LT GA+  I   E ++E    PV+QV DLK +   Q    ER+R++LSDGT+  QGMLGT
Sbjct: 5   LTAGAIGKIMNGEVTTEADMIPVLQVTDLKQIMAQQDPTRERFRMVLSDGTYLHQGMLGT 64

Query: 70  QLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEPVPATR-SVS 129
            LN LVK G LQ GSIV+L ++V + ++ R I+IV +L+V+K++ D IG PVP  + +  
Sbjct: 65  DLNNLVKEGTLQPGSIVRLTRFVGDVIKGRRIVIVPQLEVLKQISDIIGHPVPGGKHNDQ 124

Query: 130 AAFSGNPQSSVGASSGSGIVGNVNVSGASFEQPKVNQSQVPHVGFHFNTPNSGTRFNGSS 189
                  + +     GSGI   VN    + E  + N +  P VG   ++  + T     +
Sbjct: 125 RGADSGIKFNTTEQQGSGI-RQVN----NIEPGRSNAAISPQVGGTGSSVPAST-----T 184

Query: 190 PVTGSYGDQKMAYHNNGSDIPRSPLNAYAYAPPQPIHQQPPSMYSNRGGPVAKNEAPPRI 249
           P T +Y +          D  R P  +Y + P     Q PP MY+NR GPVA+NEAPP+I
Sbjct: 185 PSTRAYSNPSSGNGVTRQDYARDPPTSYPHQP-----QPPPPMYANR-GPVARNEAPPKI 244

Query: 250 MPITALNPYQGRWTIKARVTSKGELRDYNNPRGDGKVFSFDLLDAYGGEIRATCFDMVAD 309
           +P+ AL+PY GRWTIKARVT+K  L+ Y+NPRG+GKVF+FDLLDA GGEIR TCF+ VAD
Sbjct: 245 IPVNALSPYSGRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLDADGGEIRVTCFNAVAD 304

Query: 310 QFYNQIESGNVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQPCFEDDQSIPHQQFHF 369
           QFY+QI  GN+Y IS+GSL+PAQKN+NHL ND+EI L+N STI+ C+E+D +IP  QFHF
Sbjct: 305 QFYDQIVVGNLYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCYEEDAAIPRHQFHF 364

Query: 370 HHISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGN 429
             I +IE M++N +VDVIG+VSSI+P  ++ RKNGT T KRSLQLKDMSGRSVE+T+WG+
Sbjct: 365 RTIGDIESMENNCIVDVIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEVTMWGD 424

Query: 430 FCQAEGQKLQNMCDSGLFPVLAVKSGRVSNFNGKAVGTISTSQLFVEPDFPEARTLRGWF 489
           FC AEGQ+LQ++CDSG+FPVLAVK+GR+S FNGK V TI +SQLF++PDF EA  L+ WF
Sbjct: 425 FCNAEGQRLQSLCDSGVFPVLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAEKLKNWF 484

Query: 490 EKEGRSTPSVSISREVATVGRTDARQTISQIKDERLGTSEKPDWITVSATVSFIKVDNFC 549
           E+EG+S P +S+SRE +  G+ D R+TISQIKDE+LGTSEKPDWITVSAT+ ++K DNFC
Sbjct: 485 EREGKSVPCISLSREFSGSGKVDVRKTISQIKDEKLGTSEKPDWITVSATILYLKFDNFC 544

Query: 550 YTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQ 609
           YTACPIM GDR CSKKVT+NGDG WRC++CD+SVDECDYRYILQLQIQDHT LT VTAFQ
Sbjct: 545 YTACPIMNGDRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQ 604

Query: 610 EGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKVKEETFSDEQ 662
           E GEEIMGI AK LYY+K E +D+EKF +IIRKV FTK+  KLKVKEETFSDEQ
Sbjct: 605 EAGEEIMGISAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQ 642

[Close]

BLAST of CmaCh16G012160 vs. TAIR 10
Match: AT2G06510.1 (replication protein A 1A )

HSP 1 Score: 659.8 bits (1701), Expect = 2.3e-189
Identity = 335/657 (50.99%), Postives = 448/657 (68.19%), Query Frame = 0


Query: 7   PFKLTEGAVMVICKRESSEETFQPVVQVIDLKFVNTTQQSGSERYRLLLSDGTHYQQGML 66
           P  LT  A+  I      +   +P++QV+++K +  +Q+   ERYR L+SDG   Q  M+
Sbjct: 2   PVSLTPNAITAI---HDGDVNLKPLLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMV 61

Query: 67  GTQLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEPVPATRSV 126
             QLN  VKSG+ +KGSIVQL  Y+C+ V+ R +I+V+ ++ I +  + IG P       
Sbjct: 62  AVQLNDRVKSGQFEKGSIVQLIDYICSDVKGRKLIVVLNMETIVQQSETIGNP------- 121

Query: 127 SAAFSGNPQSSVGASSGSGIVGNVNVSGASFEQPKVNQSQVPHVGFHFNTPNSGTRFNGS 186
              F      +    SG+G +   N     F +P V  S                  N +
Sbjct: 122 -TIFGETDTEAQKTFSGTGNIPPPN--RVVFNEPMVQHS-----------------VNRA 181

Query: 187 SPVTGSYGDQKMAYHNNGSDIPRSPLNAYAYAPPQPIHQQPPSMYSNRGGPVAKNEAPPR 246
            P               G +I     N  ++ P      QPP+ Y N  GP+ KNEAP R
Sbjct: 182 PP--------------RGVNIQNQANNTPSFRPSVQPSYQPPASYRNH-GPIMKNEAPAR 241

Query: 247 IMPITALNPYQGRWTIKARVTSKGELRDYNNPRGDGKVFSFDLLDAYGGEIRATCFDMVA 306
           ++PI ALNPYQGRW IKARVT+KG++R YNN +GDGKVFSFDLLD  GGEIR TCF+ + 
Sbjct: 242 VIPIAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALV 301

Query: 307 DQFYNQIESGNVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQPCFEDDQSIPHQQFH 366
           D+FY+  E G VY ISKGSLKPAQKN+NHL N++EIFLE+TST++ C ++D SIP QQF 
Sbjct: 302 DRFYDVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFS 361

Query: 367 FHHISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWG 426
           F  IS+IE  ++N+++DVIGVV+S+NP+  ++RKNG ET +R L LKD SG++VE+TLWG
Sbjct: 362 FRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDESGKAVEVTLWG 421

Query: 427 NFCQAEGQKLQNMCDSGLFPVLAVKSGRVSNFNGKAVGTISTSQLFVEPDFPEARTLRGW 486
            FC  +G++L+ M DS   PVLA+K+G+VS+F+GK+VGTIS++QLF+ PDFPEA  LR W
Sbjct: 422 EFCNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTW 481

Query: 487 FEKEGRSTPSVSISREV--ATVGRTDARQTISQIKDERLGTSEKPDWITVSATVSFIKVD 546
           F+  G+ T S SISR+     V R + R+ +SQIK+E LG S+KPDWITV AT+SFIK D
Sbjct: 482 FDYGGKDTASFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTD 541

Query: 547 NFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVT 606
           +FCYTACP+MIGD+QC+KKVT +G  +W CDRC+Q  DECDYRY+LQ+QIQDHTGLTW+T
Sbjct: 542 SFCYTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWIT 601

Query: 607 AFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKVKEETFSDEQ 662
           AFQE GEEIMG PAK+LY +KYE + +E+FAEI+R  LF ++++KLK+KEE++ DEQ
Sbjct: 602 AFQETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQ 613

[Close]

BLAST of CmaCh16G012160 vs. TAIR 10
Match: AT2G06510.2 (replication protein A 1A )

HSP 1 Score: 651.0 bits (1678), Expect = 1.1e-186
Identity = 328/630 (52.06%), Postives = 436/630 (69.21%), Query Frame = 0


Query: 34  VIDLKFVNTTQQSGSERYRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSIVQLRQYVCN 93
           V+++K +  +Q+   ERYR L+SDG   Q  M+  QLN  VKSG+ +KGSIVQL  Y+C+
Sbjct: 3   VLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIVQLIDYICS 62

Query: 94  PVQERLIIIVIELDVIKEMCDFIGEPVPATRSVSAAFSGNPQSSVGASSGSGIVGNVNVS 153
            V+ R +I+V+ ++ I +  + IG P          F      +    SG+G +   N  
Sbjct: 63  DVKGRKLIVVLNMETIVQQSETIGNP--------TIFGETDTEAQKTFSGTGNIPPPN-- 122

Query: 154 GASFEQPKVNQSQVPHVGFHFNTPNSGTRFNGSSPVTGSYGDQKMAYHNNGSDIPRSPLN 213
              F +P V  S                  N + P               G +I     N
Sbjct: 123 RVVFNEPMVQHS-----------------VNRAPP--------------RGVNIQNQANN 182

Query: 214 AYAYAPPQPIHQQPPSMYSNRGGPVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELR 273
             ++ P      QPP+ Y N  GP+ KNEAP R++PI ALNPYQGRW IKARVT+KG++R
Sbjct: 183 TPSFRPSVQPSYQPPASYRNH-GPIMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDIR 242

Query: 274 DYNNPRGDGKVFSFDLLDAYGGEIRATCFDMVADQFYNQIESGNVYFISKGSLKPAQKNY 333
            YNN +GDGKVFSFDLLD  GGEIR TCF+ + D+FY+  E G VY ISKGSLKPAQKN+
Sbjct: 243 RYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFYDVTEVGKVYLISKGSLKPAQKNF 302

Query: 334 NHLNNDFEIFLENTSTIQPCFEDDQSIPHQQFHFHHISEIEGMDSNSVVDVIGVVSSINP 393
           NHL N++EIFLE+TST++ C ++D SIP QQF F  IS+IE  ++N+++DVIGVV+S+NP
Sbjct: 303 NHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPISDIENAENNTILDVIGVVTSVNP 362

Query: 394 ATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQKLQNMCDSGLFPVLAVKSG 453
           +  ++RKNG ET +R L LKD SG++VE+TLWG FC  +G++L+ M DS   PVLA+K+G
Sbjct: 363 SVPILRKNGMETHRRILNLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFHPVLAIKAG 422

Query: 454 RVSNFNGKAVGTISTSQLFVEPDFPEARTLRGWFEKEGRSTPSVSISREV--ATVGRTDA 513
           +VS+F+GK+VGTIS++QLF+ PDFPEA  LR WF+  G+ T S SISR+     V R + 
Sbjct: 423 KVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDYGGKDTASFSISRDTMPGGVSRNEI 482

Query: 514 RQTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGK 573
           R+ +SQIK+E LG S+KPDWITV AT+SFIK D+FCYTACP+MIGD+QC+KKVT +G  +
Sbjct: 483 RKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDKQCNKKVTRSGTNR 542

Query: 574 WRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDD 633
           W CDRC+Q  DECDYRY+LQ+QIQDHTGLTW+TAFQE GEEIMG PAK+LY +KYE + +
Sbjct: 543 WLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYAMKYELEKE 590

Query: 634 EKFAEIIRKVLFTKFIMKLKVKEETFSDEQ 662
           E+FAEI+R  LF ++++KLK+KEE++ DEQ
Sbjct: 603 EEFAEIVRDRLFHQYMLKLKIKEESYGDEQ 590

[Close]

BLAST of CmaCh16G012160 vs. TAIR 10
Match: AT5G08020.1 (RPA70-kDa subunit B )

HSP 1 Score: 282.7 bits (722), Expect = 7.6e-76
Identity = 153/436 (35.09%), Postives = 249/436 (57.11%), Query Frame = 0


Query: 237 PVAKNEAPPRIMPITALNPYQGRWTIKARVTSKGELRDYNNPRGDGKVFSFDLLDAYGGE 296
           P A+     R+ P+ +LNPYQG WTIK RVT+KG +R Y N RG+G VF+ +L D  G +
Sbjct: 147 PAARMAMTRRVHPLVSLNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEEGTQ 206

Query: 297 IRATCFDMVADQFYNQIESGNVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQPCFED 356
           I+AT F+  A +FY++ E G VY+IS+GSLK A K +  + ND+E+ L   S ++    +
Sbjct: 207 IQATMFNAAARKFYDRFEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNE 266

Query: 357 DQSIPHQQFHFHHISEI-EGMDSNSVVDVIGVVSSINPATSLMRKNGTE-TQKRSLQLKD 416
           +   P  +F+F  I E+   ++   ++DVIGVV S++P  S+ RKN  E   KR + L D
Sbjct: 267 EMFTPETKFNFVPIDELGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLAD 326

Query: 417 MSGRSVELTLWGNFCQAEGQKLQNMCDSGLFPVLAVKSGRVSNFNGKAVGTISTSQLFVE 476
            + ++V ++LW +     GQ+L +M D+   PV+A+KS +V  F G ++ TIS S + + 
Sbjct: 327 ETKKTVVVSLWNDLATGIGQELLDMADN--HPVIAIKSLKVGAFQGVSLSTISRSNVVIN 386

Query: 477 PDFPEARTLRGWFEKEGRSTPSVSISREVATVGRTDARQT------ISQIKDERLGTSEK 536
           P+ PEA  L+ W++ EG+ T   +I   +++     +R        +S I        EK
Sbjct: 387 PNSPEATKLKSWYDAEGKETSMSAIGSGMSSSANNGSRSMYSDRVFLSHITSNPSLGEEK 446

Query: 537 PDWITVSATVSFIKVD-NFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYR 596
           P + +  A +SFIK D    Y AC      + C+KKVT   D  + C+ C +   EC  R
Sbjct: 447 PVFFSTRAYISFIKPDQTMWYRAC------KTCNKKVTEAMDSGYWCESCQKKDQECSLR 506

Query: 597 YILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFI 656
           YI+ +++ D TG TW++AF +  E+I+G  A  L  LK EE +  +F   +++  ++  +
Sbjct: 507 YIMAVKVSDSTGETWLSAFNDEAEKIIGCTADDLNDLKSEEGEVNEFQTKLKEATWSSHL 566

Query: 657 MKLKVKEETFSDEQSE 664
            ++ V ++ ++ E+ +
Sbjct: 567 FRISVSQQEYNSEKRQ 574

The following BLAST results are available for this feature:

BLAST of CmaCh16G012160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHJ6	3.6e-216	56.20	Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana OX=37...	[more]
F4JSG3	4.8e-216	59.02	Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana OX=37...	[more]
Q9SKI4	3.2e-188	50.99	Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana OX=37...	[more]
Q65XV7	4.2e-172	45.84	Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japoni...	[more]
Q6YZ49	2.8e-168	46.43	Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japoni...	[more]

BLAST of CmaCh16G012160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45400.1	2.6e-217	56.20	Replication factor-A protein 1-related	[more]
AT4G19130.1	3.4e-217	59.02	Replication factor-A protein 1-related	[more]
AT2G06510.1	2.3e-189	50.99	replication protein A 1A	[more]
AT2G06510.2	1.1e-186	52.06	replication protein A 1A	[more]
AT5G08020.1	7.6e-76	35.09	RPA70-kDa subunit B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031657	Replication protein A, OB domain	PFAM	PF16900	REPA_OB_2	coord: 370..473 e-value: 1.7E-29 score: 101.7
IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	PFAM	PF01336	tRNA_anti-codon	coord: 260..342 e-value: 2.9E-10 score: 40.0
None	No IPR available	GENE3D	2.40.50.140		coord: 246..355 e-value: 1.3E-36 score: 127.0
None	No IPR available	GENE3D	2.40.50.140		coord: 8..123 e-value: 1.1E-34 score: 120.9
None	No IPR available	GENE3D	2.40.50.140		coord: 359..497 e-value: 5.3E-37 score: 128.6
None	No IPR available	GENE3D	2.40.50.140		coord: 498..667 e-value: 1.1E-49 score: 170.3
None	No IPR available	PANTHER	PTHR23273:SF66	REPLICATION PROTEIN A SUBUNIT	coord: 6..665
None	No IPR available	PANTHER	PTHR23273	REPLICATION FACTOR A 1, RFA1	coord: 6..665
None	No IPR available	CDD	cd04474	RPA1_DBD_A	coord: 249..352 e-value: 1.51072E-49 score: 166.268
None	No IPR available	CDD	cd04475	RPA1_DBD_B	coord: 381..488 e-value: 5.42933E-35 score: 126.16
IPR004591	Replication factor A protein 1	TIGRFAM	TIGR00617	TIGR00617	coord: 236..661 e-value: 6.2E-171 score: 567.9
IPR007199	Replication factor-A protein 1, N-terminal	PFAM	PF04057	Rep-A_N	coord: 10..111 e-value: 5.2E-32 score: 109.9
IPR007199	Replication factor-A protein 1, N-terminal	CDD	cd04477	RPA1N	coord: 13..110 e-value: 1.70299E-34 score: 124.617
IPR013955	Replication factor A, C-terminal	PFAM	PF08646	Rep_fac-A_C	coord: 531..661 e-value: 3.0E-46 score: 156.8
IPR013955	Replication factor A, C-terminal	CDD	cd04476	RPA1_DBD_C	coord: 515..661 e-value: 4.46254E-57 score: 189.056
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 246..359
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 365..493
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 8..117
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 512..661

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G012160.1	CmaCh16G012160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006268	DNA unwinding involved in DNA replication
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0051321	meiotic cell cycle
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0007004	telomere maintenance via telomerase
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005662	DNA replication factor A complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0043047	single-stranded telomeric DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding