CmaCh16G012060 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G012060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Location	Cma_Chr16: 9149878 .. 9153967 (+)
RNA-Seq Expression	CmaCh16G012060
Synteny	CmaCh16G012060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTTGTTTGATTACATTCGGTCCTCTCGTTTGGAGGAAAGAACATCAATCATCAATATTCTCTCACTCTCTCTCTTGTTTTTCTTTTTCACTTCGTAGTGTGCTTCATTCCTCAGGCAAGGCTTCCGATCGAGGAAAAATGTATTTCTCCAACGCGAAATTTGTCTCTAGCTCTACCATTCCGGCTGCGGTTCTTCCACTTCCTTCTCGAAATGTAATTTCTCGTGAAGTTTCTTTCTCGTTTTCTTTGGCGTTCTGCTCTATTTTACTTCGAAATTCTTTTTCCTCAAGTATTTTTTCTCTGTTTCTATCGGTAGTATGCGTGTTTCAGGATGTGTCACCGGAAAATTCATCGGAGTTTGCTTTCTAGTTCAGTGTTGGAGTTTATGGCGGGAAGAAATCTCAGAGTTCTGTCGAATTCGAGTAATCGCGAGAGTAGCGATACTTCGACTGATTTTGACGTTCCGTTTCCACGAGATTATTTTGATCTTCTTGATCAGGTTTGGATTCAATCACTTTAGAAATCTCGTTTATTTGTTTGTTTTTACTTCTTGGAGCCATTTTTTCTACGATCACTTCAATGCAGTGTCCGTTTTATTGTGTCATTTTGGTAGTTAGCTACTTCAATTAGCTTCCACTTAGCTTTTCATTTCATGTTTTTTTCAAATTACGTTTAACTTTGAGATGTAACTGTCATTTTCGGATCTCGTCTATAAAAAACTGCAGGCGAAAAAAGCAACTGAAGCGGCTTTAAGAGACAACAAACAGTTGATGGTTAGTTTTGAGCACATTTTGATTTCTGTGAATGGAAAGAAGCATTTATAGATTCATAAAATAGTCTGAATTTTCTGATCAAATCTATTGTACTTCAGGAGATTGAATTTCCAACTGCTGGACTCGAATCAGTTCCAGGTTCTTCCTGTTCTCGATTTATTGCATTTTAATTGTGTTACCATCTCAAGTCGTTCCCAGGCCTGTCTAGTAACTTTCTTTGCCTGTTACAGACCATATAACCTTATGTATCAGGTGATGGCGAAGGAGGAATCGAAATGACTGAGAGTATGCAATTGATTCGCCAATTTTGTGACTGCTTCATAGATCCACTGAAAGCCACCAGGACCAGAGTAGTAATGTCCTACTGCATTATCCTTCTATTCTCTTATAAAGTAAAATGTTTGCGTTCACATATATATGCTACATAATTTATCACTGGAAGTAACTAAGAAGCAATCGATCTTTTATGCGTTTCTCTCTAAAATTTCATCTGCATACAGATCAAAACTATGAAGATTTTTCCCTTTTTCTCGAGAAACTACTCAGTGAGGCCGCCACAATGTGGCTAACACATTTTCATCATCAGATGTAAGAAGGAGAAGTTTTCAAATTCATATCTAGTGATTATTAGTAGGCATGCAGATTTTTAATCCACATCTAATGGCTATTCCAGGGCAGCCATATGACTATGGCCTCATTGAATAACTTATCAATCTTTTCCTTATGATATCAGTACTAAAAATCTCTCTGGTGCTATAGACTATAAGTTAGAAAAATCTTCTTGTTTTCTTAACGATATATCAACTTCTCCTTTTATCTTTACGATTTATCAACTTTTGTCCTCCGAAATACATTCATATTATGAAATTTGAACGAGGAAATGTAATGCAGCTGGCATCCTGTTTATGATCATGGTTTTCTTTGTAATATGCTTGCTGTCTGATGTTCTCTCTCTTTTCTGACCATGAAAAAGCTCTTTCACATTCTAGACTGTTGGTTATAGTAAAGAGAAACATTTGTAGTTCTTTCCAGAGGCCAACGAAGTAAAATTTGCAAGAAATACAGCATTTGAGGGAGCTTCGTTCAAGTTGGACTACCTCACGAAACCATCATTTTTTGAGGATTTTGGTTTTGTTGAGAAAGTGAAAATGGCAGACCGTGTGAAACCAGAAGATGAACTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGGTTAGTGAAGCCTTCCTTTGTTTCTCTTCCCTCTTATTTTAAAGCAATTTGCCCTTTGTCGGTTAAATTACATCGCGTCTTATTCCCCATTGCAGAAATGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCGCAAACACAACACGAAAGCTCATCATATTTAATGGAGAGCTCGACCGCATTAGATCCGGCTGTATCCTTTTATCATCTTTTCTATTATCCAACGAAGAGTGGGATTGGGATCAACTTTTAAAACGGTAAAAATGACATTAAGTGGTTTCTGAATTTCAAGAAAAATGTCAAAATCTTAATTTTTTTTCATTTAATTGGTTCCTGAACTTTAAAAAATGTCCTCTAGTGCATATTTTTTTTTAAATTTATGAGACTTAGATTAATAGTTTATTAGTCTATTGAATTTAGCTTGTAATGATTTAGTCCCATAACTCGATTTTGGTACTTATAAATGTGTAACAATATAACTCTCAACTTTAATATGCAACCATTGATTACTATGTATTTTATAATTTGTAACGATTTAGTTCTTAGTCTAAACAAATAGTAATTAAACTGTTACGAATTGAAATTGGAGAAACTAAATTGTTAGTTGTTCATGTTACCGAGAAAGTTCAAAGACTTGTGAGTCCTTTTTAATCCTCTTTTACTTCATAAAATGAGATGAATTTTCCCATGACAGGTTGCTGGGTTGTAATTCCACAGTTCTCTTTTATTATTATTATTATTTTGTGTTTGTTATGTGACTGGACCTTAACAGGGGAAAGATTATCCGCCATTTTTCTACCCAAAGCTGGCGGCACTTACAAAGACTCTCTTCCCCAAGATGGAGACTGTATATTACATCCACAACTTCAAGGGACAGAAAGGAGGAGTTCTTTTCAGGTTGAACATGACACTTTTAAATCTTTTCCTGTTGATTATTGTTGGGAGTGAGTCCCACATTAATCTGTTAATTTAGTGGAAGATCATGAGTTTATAATTTGAGAATATCATCTCCATTGATATGAGGCTTTTTGGAGAAGCCCAAAGCAAAACTATGAGAGCCCTCCTTAACAAAGTCATACTATTGTGGAAATCCGTGATTTTTAACATGTTATCAAAGTCATGCCTTGAACTTAGTTATGTCAATAGAATTTTCAAATATCGAACAAAGGGGGTGTACTTTGTTCGAAGGCTCCAGAGAAAGGAGTCGAGCCTCGATTAAGAGGAGACTATTCTAGAGCTTCATAAACCTCAAACTTTGTTCGAGGGGAGGATTATTGGGAGTGAGTCCTCTTGGGGAGGAAGCCCAAAGCAAAACTATGAGAGCTTATGCTCAAAGTGGACAATATTTAGATGGTTTTTTTCCATAATAATAGAATTAAAACCTTCAATTATTGTGTTTCCCGTTTGTTATGATGGTAATGTAGGTGCTACCCAGGTCCTTGGAAGGTCCTTAGAAAAGTGAGGAATAAATTAGTCTGTGTTCATCAGCAACAGGACATGCCTTCTCTCAAGGAAGTCGCTTTAAACATTCTTCCATCGTCTTGAGGTTACGTAACTTCTACACTAATGAACTCCTACTTCACAATCATCTCACCCACATTCCATAAACTTTTCTTTTTCTGGTTCTATAGTTTTAGAAATCAAGCTTATAAAAGTTACTGATGCATATTTGGTTTATTTATTACTATAATAATTTCAAGATGTTAAAGATAAATTGCAAAAACAAAAATAATCTTTTCTATGATTTCGTCAATTCGTAGACAGATTAAATGTATGGTATTTAAAAATAGAGAAAATAAGAAATATTCAAACAAGAACCAAAAGTTTCAATTTACAATCACACAACCGCAGTATTGAATGAGGATTATTTGGTTTGACTGCATATGTATTGAGCGAACTACATTTTTTTTTTTTTTTTTTGGCAGGTCTTATTAGTCGATATTACCCTTCATTTTCATGCAAAGAGGATCATTTGTTGGTTAGCATCGAAGTCTTTTCTGGTAAATGCTACATCATCATAATCTGTATATTCCTATTCAATATTTGACGTCCATGAAATTTACGGAATGCCTAATAATACACATAATTTAAAAC

mRNA sequence

ATGGAAGATTTGTTTGATTACATTCGTGTGCTTCATTCCTCAGGCAAGGCTTCCGATCGAGGAAAAATGTATTTCTCCAACGCGAAATTTGTCTCTAGCTCTACCATTCCGGCTGCGGTTCTTCCACTTCCTTCTCGAAATTATGCGTGTTTCAGGATGTGTCACCGGAAAATTCATCGGAGTTTGCTTTCTAGTTCAGTGTTGGAGTTTATGGCGGGAAGAAATCTCAGAGTTCTGTCGAATTCGAGTAATCGCGAGAGTAGCGATACTTCGACTGATTTTGACGTTCCGTTTCCACGAGATTATTTTGATCTTCTTGATCAGGCGAAAAAAGCAACTGAAGCGGCTTTAAGAGACAACAAACAGTTGATGGAGATTGAATTTCCAACTGCTGGACTCGAATCAGTTCCAGGTGATGGCGAAGGAGGAATCGAAATGACTGAGAGTATGCAATTGATTCGCCAATTTTGTGACTGCTTCATAGATCCACTGAAAGCCACCAGGACCAGAGTATTCTTTCCAGAGGCCAACGAAGTAAAATTTGCAAGAAATACAGCATTTGAGGGAGCTTCGTTCAAGTTGGACTACCTCACGAAACCATCATTTTTTGAGGATTTTGGTTTTGTTGAGAAAGTGAAAATGGCAGACCGTGTGAAACCAGAAGATGAACTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGAAATGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCGCAAACACAACACGAAAGCTCATCATATTTAATGGAGAGCTCGACCGCATTAGATCCGGCTGTATCCTTTTATCATCTTTTCTATTATCCAACGAAGAGTGGGATTGGGATCAACTTTTAAAACGGGGAAAGATTATCCGCCATTTTTCTACCCAAAGCTGGCGGCACTTACAAAGACTCTCTTCCCCAAGATGGAGACTGTGCTACCCAGGTCCTTGGAAGGTCCTTAGAAAAGTGAGGAATAAATTAGTCTGTGTTCATCAGCAACAGGACATGCCTTCTCTCAAGGAAGTCGCTTTAAACATTCTTCCATCGTCTTGAGGTCTTATTAGTCGATATTACCCTTCATTTTCATGCAAAGAGGATCATTTGTTGGTTAGCATCGAAGTCTTTTCTGGTAAATGCTACATCATCATAATCTGTATATTCCTATTCAATATTTGACGTCCATGAAATTTACGGAATGCCTAATAATACACATAATTTAAAAC

Coding sequence (CDS)

ATGGAAGATTTGTTTGATTACATTCGTGTGCTTCATTCCTCAGGCAAGGCTTCCGATCGAGGAAAAATGTATTTCTCCAACGCGAAATTTGTCTCTAGCTCTACCATTCCGGCTGCGGTTCTTCCACTTCCTTCTCGAAATTATGCGTGTTTCAGGATGTGTCACCGGAAAATTCATCGGAGTTTGCTTTCTAGTTCAGTGTTGGAGTTTATGGCGGGAAGAAATCTCAGAGTTCTGTCGAATTCGAGTAATCGCGAGAGTAGCGATACTTCGACTGATTTTGACGTTCCGTTTCCACGAGATTATTTTGATCTTCTTGATCAGGCGAAAAAAGCAACTGAAGCGGCTTTAAGAGACAACAAACAGTTGATGGAGATTGAATTTCCAACTGCTGGACTCGAATCAGTTCCAGGTGATGGCGAAGGAGGAATCGAAATGACTGAGAGTATGCAATTGATTCGCCAATTTTGTGACTGCTTCATAGATCCACTGAAAGCCACCAGGACCAGAGTATTCTTTCCAGAGGCCAACGAAGTAAAATTTGCAAGAAATACAGCATTTGAGGGAGCTTCGTTCAAGTTGGACTACCTCACGAAACCATCATTTTTTGAGGATTTTGGTTTTGTTGAGAAAGTGAAAATGGCAGACCGTGTGAAACCAGAAGATGAACTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGAAATGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCGCAAACACAACACGAAAGCTCATCATATTTAATGGAGAGCTCGACCGCATTAGATCCGGCTGTATCCTTTTATCATCTTTTCTATTATCCAACGAAGAGTGGGATTGGGATCAACTTTTAAAACGGGGAAAGATTATCCGCCATTTTTCTACCCAAAGCTGGCGGCACTTACAAAGACTCTCTTCCCCAAGATGGAGACTGTGCTACCCAGGTCCTTGGAAGGTCCTTAGAAAAGTGAGGAATAAATTAGTCTGTGTTCATCAGCAACAGGACATGCCTTCTCTCAAGGAAGTCGCTTTAAACATTCTTCCATCGTCTTGA

Protein sequence

MEDLFDYIRVLHSSGKASDRGKMYFSNAKFVSSSTIPAAVLPLPSRNYACFRMCHRKIHRSLLSSSVLEFMAGRNLRVLSNSSNRESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEGGIEMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSFFEDFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGELDRIRSGCILLSSFLLSNEEWDWDQLLKRGKIIRHFSTQSWRHLQRLSSPRWRLCYPGPWKVLRKVRNKLVCVHQQQDMPSLKEVALNILPSS

Homology

[Close]

BLAST of CmaCh16G012060 vs. TAIR 10
Match: AT5G48790.1 (Domain of unknown function (DUF1995) )

HSP 1 Score: 334.0 bits (855), Expect = 1.5e-91
Identity = 194/339 (57.23%), Postives = 229/339 (67.55%), Query Frame = 0


Query: 25  FSNAKFVSSSTIPAAVLPLPSRNYACFRMCHRKIHRSLLSSSVLEFMAGRNLRVLSNSSN 84
           FS A  VS +++ A  L   S+N  C    H K +    ++  L+F A        + S 
Sbjct: 5   FSIATTVSPASL-AGTLASNSKNVLC--SLHSKNNDITKTNRNLKFRA-------CSVSG 64

Query: 85  RESSDTSTDFDVPFPRDYFDLLDQAKKATEAALRDNKQLMEIEFPTAGLESVPGDGEGGI 144
             +++TS D +VPFPRDY +L++QAK+A E AL+D KQLMEIEFPT+GL SVPGDGEG  
Sbjct: 65  GYNNNTSVD-NVPFPRDYVELINQAKEAVEMALKDEKQLMEIEFPTSGLASVPGDGEGAT 124

Query: 145 EMTESMQLIRQFCDCFIDPLKATRTRVFFPEANEVKFARNTAFEGASFKLDYLTKPSFFE 204
           EMTES+ +IR+FCD  + P KA  TR+FFPEANEVKFA+ T F G  FKLDYLTKPS FE
Sbjct: 125 EMTESINMIREFCDRLLAPEKARSTRIFFPEANEVKFAQKTVFGGTYFKLDYLTKPSLFE 184

Query: 205 DFGFVEKVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGELDR 264
           DFGF E+VKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELDR
Sbjct: 185 DFGFFERVKMADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVVNTDRKLIIFNGELDR 244

Query: 265 IRSG---------CILLSSFLLSNEEWDWDQLLKRGKIIRHFSTQSWRHLQRLSSPRWRL 324
           IRSG            L+  LL   E  +         I +F  Q    L R        
Sbjct: 245 IRSGYYPKFFYPKLAALTKTLLPKMETVY--------YIHNFKGQKGGVLFR-------- 304

Query: 325 CYPGPWKVLRKVRNKLVCVHQQQDMPSLKEVALNILPSS 355
           CYPGPW+VLR+ RNK +CVHQQ+ MPSLKEVAL+IL S+
Sbjct: 305 CYPGPWQVLRRTRNKYICVHQQESMPSLKEVALDILASA 316

The following BLAST results are available for this feature:

BLAST of CmaCh16G012060 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G012060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48790.1	1.5e-91	57.23	Domain of unknown function (DUF1995)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018962	Domain of unknown function DUF1995	PFAM	PF09353	DUF1995	coord: 99..347 e-value: 3.3E-34 score: 118.7
None	No IPR available	PANTHER	PTHR34051:SF1	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC ISOFORM X1	coord: 77..268
None	No IPR available	PANTHER	PTHR34051:SF1	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC ISOFORM X1	coord: 316..353
IPR044687	Protein LOW PSII ACCUMULATION 3	PANTHER	PTHR34051	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 316..353 coord: 77..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G012060.1	CmaCh16G012060.1	mRNA