CmaCh16G011990 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G011990
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Secretory carrier-associated membrane protein
Location	Cma_Chr16: 9123316 .. 9127933 (+)
RNA-Seq Expression	CmaCh16G011990
Synteny	CmaCh16G011990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGTAGCGAACAAGCACCGATAATAAAAAGGCGCTACAAAGAAGAAACCATCACTCAACTCCATCACTGCTACCCACCGTTTTCTCTCATCTCTCTTTTCTCCCAAAACAACTCGCTCGATTTTAGGGTTCTGAAAAATCGCCATGAATCGCCACAATGATCCAAATCCTTTCGATGAAGGAGAGGTCAATCCATTCTCGGTAAGTTTCTCTTTCTTTCGTGGCTAAATCTCAATTTACTTTAGATATTTGCATTCATTGTTTTTTTTTTCTTTCGCATTTTCGTTTCTTGTTTCGGCGATTTTCATTCGGCGAGTGTCGCGATCGGGTTCTGTTCCTATTTTTGAGTCTCGAGGGGGCGAGAGTGCGGTTGTTGGATTGATCTGAATCTTAGGGAAATCTTGCTAAATTTGGTGGAATATGGTTACTTTATGGCTGCTGAGAGATTTCGTGGGAGAATGAATTCAAGAGCGGTGTGGAACATTTTAAGTGTTGGAAATATCGACCTCCTAATGGTATGATATCAATGGAGATGCATTCCTTACTTATAAATTCAAGACCCTCTCCATAATGGTATGATATCAATGGAAATGGAGATGTATTCCTTACTTATAAACTCCGGATCAACCTCTTAATTAGCCGATATGGGACTCCTCTTCCAACAATCCTCCCCTCGAACTCGAACAAAGTACACTATAGTGCCTCCCTTGAGGCTTATGGAGTCTTCAAACAGCCTTCCCTTAATCGAGGCTCGACTCCTTCTCTGACGCCCTTGAACAAAGTACACCTTCTGTTTGACACTTTAATCACTTTTGACTACACTTTTGAGGTCTCAACTTCTTTCTTCGACATTTGAGGATTCAATTGACATGGCTAAGTTAAGGGCATGACTCTAATATCATGTTAGAAATTGATAGAAATCACGTCTCTCCATAATGGTATGATTTGAGGGTTTCTTACTTATAAACCCACAACTAACCCCTTAATTAGGTGCCGACGTGGACTCCTCTTCCAACAATCCTCAATAGTTTAAGGATGGAGTAGAAATTAATGTTTAAAGGTCGAATGGTACTAAAAGTAGACTAACGGAAGTAATTGTTGTTTTGGAGTCCTAAGGAAGATGATTTCACCATTTCGGATTGAGAATGAGTGTCATTACAATCTGTGTGGAATTGTTATTTGAATATGCATAAATGAAATTAACCGTTGGTTGATTATTGACAATTTCACGGGCGTTCTTTTGATATCTGAAACTAAAGACAAGCCGATCAAGCTTGTTCTATGGAGGATTAGAATGGTAATAACATCACTCATTGTTGCTAATTTTGCATTTGCAGAAAGACAATGCTGCTCCTGGATCAAAGTTTCGGATCCCACAAATGATATCGGACACTCTGGGATTTGGGCAGAAGCAGGATGCTACAGTGGATATACCACTGGATACGATGAATGTAACGAATATCATGTTCTGTCTTTTCTCACTTACATTTTCTTTACCTGGAAGAATCAAGTAACGCTTCATTTGGTTCATGTAGAATCTGAGGAAGAACGAGAGAGACATTGCCGCTTGGGAAGCAGAACTTAATAGGAAAGAAAAGGTATTCTTCGATATCCATGATTTTGTGTTTGCGTTTAGACTGATACTACCTTCAGCTTAGTCCATAACTTTACAATATATGAATATATCTGCAGAGGTTACCTAACTGTTCTTATGCCTCATTTTTACCAGGAAATCAAAAAGAGGGAAGAAGCTGTTTCTAGAGGTGGTTGACATCAAATGTTGTTTGATTTTGTTTCTATGAAGCTATCGACAATCTATAACTTTTTCAATGTTGCACAGCTGGTGTCCCTACTGATGATAGAAACTGGCCTCCATTTTTCCCCATTATTCATCATGATATAGCTAATGAAATTCCAGTACATGCTCAGAAGTTGCAGTACTTGGCTTTCGCTAGCTGGCTAGGTATGCAAAGTTAATTGTCTCAAATTCTTTTTTATTATTTTATAAACTTTATATCCAAATATTTGAGTATAAATTGTGAGATCCACATCGGTTGGTTGTAGAAGGGTACAAAACATTCTTTATAATGGTGTGACAACCTCTCTCTAGTAGACACGTGTTAAAAACCTTGAGGGGAAGCCCAGAAGGGAAAACCTAAAGAGGACAATATTTGCTAACGGTAGGCTTGGGCTGTTACAAACACATCGATTGGAAAAGGGAATGAGTGTAGAAAGGACATTGGGCTCTGAGAGGGGGGGGGGGGGGGGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGAATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGCATTCTTTACAAGAGTGTGAAAACCTCTCTTTAGTAGACTTGTTTTAAAACTTTGAGAGGAAGCCCAAAAGGGAAAGTCCAAAGAGGACAATATATGCTAGCGGTGTGGGCTTGAGGTGTTACATAAACATTCTTGAAAGTGTTGCTTTTCTATGTGTACATGATGTTCTTCACCTCACTTAAGTTCTTCTTGCCTCACTTAGCATCTCGTCCTCAACATTATCTTTTCAAACCATATAAACTTAGTTATTTTTAACTCTACATTTTATCCCTTGCTGTTTTTGCAGGCATAGGGTTGTGCTTGGTCTTCAATGTTATTGCTATAACTGTCTGCTGGATAAGAGGCGGGGGTAATTACTTCACTATCAGTTTTCTATTTTTTGTGCAATGGGTCACTTTAAGCTGCAACAAATGGATTTTTTGACTGTTGTCACAAATTGCAGGAGTCACAATCTTTTTACTTGCTGTAATATATGCCATACTTGGAATTCCTCTTTCATATGTGCTATGGTATAGGCCTCTATACCGTGCTATGAGGTGAGGTCGAATAATCTCTATATTTCATTCAAACGGGTTAAGAAGCTCTCCTTTATTGGGTTTCTTCCCTCTGCCTCGTACTCGCCTTCCCTCTTTCCTCGTCTCTCGTTTAATTTCTATTGTTGCTTTTGCTCATTATTGTACTCTGTAGACATTATGCTGACTGCTGATACTATTTTGCATTTTTCATTTTATCAACTTGCAGGACAGATAGTGCCTTGAATTTTGGTTGGTTCTTCATGTTCTACGGGGTCAAATACTAAATTCTCTCATGATTTTTTTTTTCCATAATACATATATTTTTTAATCCCTTAGTACTCAATTAATTGAGTTTCTACCACCTTACAGATACACATCTTATTCTGCGTTTTTGCTGCCATTGCGCCCCCAGTTGTGTTTCATGGGCAGTCATTGACGTAAGTTTACGGCTATCATTTCATTTTAAGCTTTTAATATGCTTCAACTTCAAAATGTTCATGAAATGAGTTTCCTTTCTTCTGCCAACATATGAAAGTTTCTTCTTTAAGCTTTTTTTTTTCTTCCATACTGCTTGCCTTGTGCTAAATACATCCTTCAAACATTTTCAGGGGCATCTTAGCAGCAATTGACGTCTTCTCTCAACATGTCTTGGTTGGGGTAAGTTTCGAATAGATAAGAATATACGACTACAAATCTCGTAAACCATCTATTTACTTATGTATATAGAGAAATGGAGGATCTGATCAATTTCCACCATGATATAATGGTTAACATACAAATTGGACCATCTTTATTGCGTTATTATGCATCCTTTTAGATGGTGTATCATGTTTAAAAATTGAATTTAAACTATCTTACTTTGTCTTGACTCTCTCTGGCTAGTCATTATTTAGGCATAAGCACATGCAGTTTCACTATAGGTTCCTTGCAATATCAATGGTGTGGTTTTGTACGTATGTTGAGATTATTGGTTGTTGCTGGAACAATGGTTTTAAATGGAGAGAGAAATTGACAAATGTATTTTGAACATGCTTCTTCCGGTTCTTCTAGGACAGCCACAAAAACAATTTTAGTAACTTTTCGTCGGTATTAAATGATTGAGTGACATGATTGTTTTCAACTGCTATAACAATAGAACCATTGTTTGACCGTTGAATAAAACATAAATGTAACTGAAGATCAGATTCATATTATTTCTTCCAAGTTTGACTATTATTGTCTTTTTTTCTTTTTCAGATATTCTACCTCATTGGATTTGCCTTTTTTTGCTTGGAATCACTTCTTAGTTTGTGGGTTCTTCAGGTAAGACATTTTCGTTTGAAAATTAATCTTATAAACACGATTTTATCTTAGAATCGTAATTTATTTTTTATTTTTTCCTTGTGCATTCTTTCCTCTCAATAAATAAAATGCACAGAATATATTCATTTATAAGCTTTGTATTTTTCTGGGCAGAAAATCTATTTGTATTTTAGGGGAAACAAGTGA

mRNA sequence

GCGTAGCGAACAAGCACCGATAATAAAAAGGCGCTACAAAGAAGAAACCATCACTCAACTCCATCACTGCTACCCACCGTTTTCTCTCATCTCTCTTTTCTCCCAAAACAACTCGCTCGATTTTAGGGTTCTGAAAAATCGCCATGAATCGCCACAATGATCCAAATCCTTTCGATGAAGGAGAGGTCAATCCATTCTCGAAAGACAATGCTGCTCCTGGATCAAAGTTTCGGATCCCACAAATGATATCGGACACTCTGGGATTTGGGCAGAAGCAGGATGCTACAGTGGATATACCACTGGATACGATGAATAATCTGAGGAAGAACGAGAGAGACATTGCCGCTTGGGAAGCAGAACTTAATAGGAAAGAAAAGGAAATCAAAAAGAGGGAAGAAGCTGTTTCTAGAGCTGGTGTCCCTACTGATGATAGAAACTGGCCTCCATTTTTCCCCATTATTCATCATGATATAGCTAATGAAATTCCAGTACATGCTCAGAAGTTGCAGTACTTGGCTTTCGCTAGCTGGCTAGGCATAGGGTTGTGCTTGGTCTTCAATGTTATTGCTATAACTGTCTGCTGGATAAGAGGCGGGGGAGTCACAATCTTTTTACTTGCTGTAATATATGCCATACTTGGAATTCCTCTTTCATATGTGCTATGGTATAGGCCTCTATACCGTGCTATGAGGACAGATAGTGCCTTGAATTTTGGTTGGTTCTTCATGTTCTACGGGATACACATCTTATTCTGCGTTTTTGCTGCCATTGCGCCCCCAGTTGTGTTTCATGGGCAGTCATTGACGGGCATCTTAGCAGCAATTGACGTCTTCTCTCAACATGTCTTGGTTGGGATATTCTACCTCATTGGATTTGCCTTTTTTTGCTTGGAATCACTTCTTAGTTTGTGGGTTCTTCAGAAAATCTATTTGTATTTTAGGGGAAACAAGTGA

Coding sequence (CDS)

ATGAATCGCCACAATGATCCAAATCCTTTCGATGAAGGAGAGGTCAATCCATTCTCGAAAGACAATGCTGCTCCTGGATCAAAGTTTCGGATCCCACAAATGATATCGGACACTCTGGGATTTGGGCAGAAGCAGGATGCTACAGTGGATATACCACTGGATACGATGAATAATCTGAGGAAGAACGAGAGAGACATTGCCGCTTGGGAAGCAGAACTTAATAGGAAAGAAAAGGAAATCAAAAAGAGGGAAGAAGCTGTTTCTAGAGCTGGTGTCCCTACTGATGATAGAAACTGGCCTCCATTTTTCCCCATTATTCATCATGATATAGCTAATGAAATTCCAGTACATGCTCAGAAGTTGCAGTACTTGGCTTTCGCTAGCTGGCTAGGCATAGGGTTGTGCTTGGTCTTCAATGTTATTGCTATAACTGTCTGCTGGATAAGAGGCGGGGGAGTCACAATCTTTTTACTTGCTGTAATATATGCCATACTTGGAATTCCTCTTTCATATGTGCTATGGTATAGGCCTCTATACCGTGCTATGAGGACAGATAGTGCCTTGAATTTTGGTTGGTTCTTCATGTTCTACGGGATACACATCTTATTCTGCGTTTTTGCTGCCATTGCGCCCCCAGTTGTGTTTCATGGGCAGTCATTGACGGGCATCTTAGCAGCAATTGACGTCTTCTCTCAACATGTCTTGGTTGGGATATTCTACCTCATTGGATTTGCCTTTTTTTGCTTGGAATCACTTCTTAGTTTGTGGGTTCTTCAGAAAATCTATTTGTATTTTAGGGGAAACAAGTGA

Protein sequence

MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLRKNERDIAAWEAELNRKEKEIKKREEAVSRAGVPTDDRNWPPFFPIIHHDIANEIPVHAQKLQYLAFASWLGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYRAMRTDSALNFGWFFMFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFAFFCLESLLSLWVLQKIYLYFRGNK

Homology

[Close]

BLAST of CmaCh16G011990 vs. ExPASy Swiss-Prot
Match: Q9C6X2 (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana OX=3702 GN=SCAMP4 PE=1 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 5.2e-105
Identity = 195/271 (71.96%), Postives = 218/271 (80.44%), Query Frame = 0


Query: 1   MNRHNDPNPFDEGE--VNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNN 60
           MNRH+DPNPFDE E  VNPFSK         R+P   S  + +GQ  DATVDIPLD MN+
Sbjct: 1   MNRHHDPNPFDEDEEIVNPFSKGGG------RVP-AASRPVEYGQSLDATVDIPLDNMND 60

Query: 61  LRKNERDIAAWEAELNRKEKEIKKREEAVSRAGVPTDDRNWPPFFPIIHHDIANEIPVHA 120
             + +R +A WEAEL +KE +IK+REEA+++ GV  DD+NWPPFFPIIHHDIA EIPVHA
Sbjct: 61  SSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHA 120

Query: 121 QKLQYLAFASWLGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPL 180
           QKLQYLAFASWLGI LCLVFNVIA  VCWI+GGGV IF LA IYA++G PLSYVLWYRPL
Sbjct: 121 QKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGGVKIFFLATIYALIGCPLSYVLWYRPL 180

Query: 181 YRAMRTDSALNFGWFFMFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGI 240
           YRAMRTDSAL FGWFF  Y IHI FC+ AAIAPP+ FHG+SLTG+LAAIDV S  +L GI
Sbjct: 181 YRAMRTDSALKFGWFFFTYLIHIGFCIVAAIAPPIFFHGKSLTGVLAAIDVISDSLLAGI 240

Query: 241 FYLIGFAFFCLESLLSLWVLQKIYLYFRGNK 270
           FY IGF  FCLESLLSLWVLQKIYLYFRGNK
Sbjct: 241 FYFIGFGLFCLESLLSLWVLQKIYLYFRGNK 264

[Close]

BLAST of CmaCh16G011990 vs. ExPASy Swiss-Prot
Match: Q0JAI9 (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=SCAMP6 PE=2 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 5.7e-96
Identity = 173/272 (63.60%), Postives = 216/272 (79.41%), Query Frame = 0


Query: 4   HNDPNPFDEGEV--NPFSK---DNAAPGSKFRIPQMISDTLGFGQ-KQDATVDIPLDTMN 63
           H+DPNPFDEG    NPFS         GS+ +     ++  GFG  + DATVD+PLDTM 
Sbjct: 2   HHDPNPFDEGNADDNPFSNGGGGGGGGGSRQQYGFRPTEPAGFGAGRGDATVDVPLDTMG 61

Query: 64  NLRKNERDIAAWEAELNRKEKEIKKREEAVSRAGVPTDDRNWPPFFPIIHHDIANEIPVH 123
           + +   R++++WE +L R+E +IK+REEA+  AGVP +D+NWPPFFPIIHHDIANEIP +
Sbjct: 62  DSKSKARELSSWETDLKRREADIKRREEALRNAGVPMEDKNWPPFFPIIHHDIANEIPAN 121

Query: 124 AQKLQYLAFASWLGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRP 183
            QKLQYLAFASWLGI LCL +N IA+ VCWI+ G   +F LA IYA+LGIPLSY++WYRP
Sbjct: 122 LQKLQYLAFASWLGIVLCLSWNFIAVIVCWIKEGDSKLFFLATIYALLGIPLSYLIWYRP 181

Query: 184 LYRAMRTDSALNFGWFFMFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVG 243
           LYRAMRT+SA +FGWFF+ Y IHI FC+ AAIAPP+VFHG+SLTGILAAID FS+HV++G
Sbjct: 182 LYRAMRTNSAFSFGWFFLCYLIHIGFCIIAAIAPPIVFHGKSLTGILAAIDTFSEHVIIG 241

Query: 244 IFYLIGFAFFCLESLLSLWVLQKIYLYFRGNK 270
           IFY +GFA FCLE+LLS+ VLQ++Y+YFRGNK
Sbjct: 242 IFYFVGFALFCLETLLSIGVLQRVYMYFRGNK 273

[Close]

BLAST of CmaCh16G011990 vs. ExPASy Swiss-Prot
Match: Q6Z8F5 (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=SCAMP5 PE=2 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 4.1e-94
Identity = 173/281 (61.57%), Postives = 212/281 (75.44%), Query Frame = 0


Query: 4   HNDPNPFDEG-EVNPFSK--------------DNAAPGSKFRIPQMISDTLGFGQKQDAT 63
           H+DPNPFDEG + NPFS                    G K +        LG G K  AT
Sbjct: 2   HHDPNPFDEGADDNPFSNGGGGGARRGGGGGGGGGGGGGKSQFSFGFGG-LGGGSKGGAT 61

Query: 64  VDIPLDTMNNLRKNERDIAAWEAELNRKEKEIKKREEAVSRAGVPTDDRNWPPFFPIIHH 123
           VDIPLD M++ +   +++  WEA+L R+E +I++REEA+  AGVP +++NWPPFFPIIHH
Sbjct: 62  VDIPLDNMSDSKGKGKELLQWEADLKRREADIRRREEALKSAGVPMEEKNWPPFFPIIHH 121

Query: 124 DIANEIPVHAQKLQYLAFASWLGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIP 183
           DIANEIP +AQKLQYLAFASWLGI LCL +N IA+ VCWIRGG   +F LA IY +LG+P
Sbjct: 122 DIANEIPANAQKLQYLAFASWLGIVLCLFWNFIAVIVCWIRGGDSKLFFLATIYGMLGMP 181

Query: 184 LSYVLWYRPLYRAMRTDSALNFGWFFMFYGIHILFCVFAAIAPPVVFHGQSLTGILAAID 243
           LSY++WYRPLYRAMRTDSA +FGWFF+ Y +HI FCVFAAIAPPV+F G+SLTGILAAID
Sbjct: 182 LSYLMWYRPLYRAMRTDSAFSFGWFFLCYMLHIAFCVFAAIAPPVIFRGKSLTGILAAID 241

Query: 244 VFSQHVLVGIFYLIGFAFFCLESLLSLWVLQKIYLYFRGNK 270
            FS H +VGIFY +GFA FCLE+L+S+WVLQK+Y+YFRG+K
Sbjct: 242 TFSDHAIVGIFYFVGFALFCLETLVSIWVLQKVYMYFRGHK 281

[Close]

BLAST of CmaCh16G011990 vs. ExPASy Swiss-Prot
Match: Q7F613 (Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SCAMP2 PE=2 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 4.4e-88
Identity = 156/263 (59.32%), Postives = 207/263 (78.71%), Query Frame = 0


Query: 6   DPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLRKNERD 65
           D NPFDE +VNPF+  +  P S  R+P +  +  GF   + ATVDIPLD+  +++K E++
Sbjct: 6   DRNPFDEDDVNPFAGGSVPPASNSRMPPLPHEP-GFYNDRGATVDIPLDSTKDMKKKEKE 65

Query: 66  IAAWEAELNRKEKEIKKREEAVSRAGVPTDDRNWPPFFPIIHHDIANEIPVHAQKLQYLA 125
           + A EAELN++E E+++REEA SRAG+  +++NWPPFFPIIHHDI+NEIP+H Q++QYLA
Sbjct: 66  LQAKEAELNKRESELRRREEAASRAGIVIEEKNWPPFFPIIHHDISNEIPIHLQRMQYLA 125

Query: 126 FASWLGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYRAMRTD 185
           F+S LG+  CL +N+IA T  WI+G GV I+LLA+IY I G+P +YVLWYRPLY AMRT+
Sbjct: 126 FSSLLGLAACLFWNIIATTAAWIKGAGVMIWLLAIIYFISGVPGAYVLWYRPLYNAMRTE 185

Query: 186 SALNFGWFFMFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFYLIGFA 245
           SAL FGWFF+FY IHILFC+++A+APP  F G+SL GIL AIDV   + +VGIFY IGF 
Sbjct: 186 SALKFGWFFLFYLIHILFCIWSAVAPPFPFKGKSLAGILPAIDVIGNNAIVGIFYFIGFG 245

Query: 246 FFCLESLLSLWVLQKIYLYFRGN 269
            FCLESLLS+ V+Q++Y+YFRG+
Sbjct: 246 LFCLESLLSVVVIQQVYMYFRGS 267

[Close]

BLAST of CmaCh16G011990 vs. ExPASy Swiss-Prot
Match: Q9M5P2 (Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana OX=3702 GN=SCAMP3 PE=1 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.9e-87
Identity = 162/272 (59.56%), Postives = 212/272 (77.94%), Query Frame = 0


Query: 1   MNRHNDPNPF-DEGEVNPFSKDNAA-PGSKFRIPQMISDTLGFGQKQDATVDIPLDT--M 60
           M    DPNPF +E EVNPF+      P S  R+  +  + +GF   +  TVDIPLD    
Sbjct: 1   MANRYDPNPFAEEEEVNPFANARGVPPASNSRLSPLPPEPVGFDYGR--TVDIPLDRAGT 60

Query: 61  NNLRKNERDIAAWEAELNRKEKEIKKREEAVSRAGVPTDDRNWPPFFPIIHHDIANEIPV 120
            +L+K E+++ A EAEL R+E+++K++E+A +RAG+  + +NWPPFFP+IHHDIANEIPV
Sbjct: 61  QDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPV 120

Query: 121 HAQKLQYLAFASWLGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYR 180
           H Q+LQY+ FA++LG+ LCL +N+IA+T  WI+G GVTI+LLA+IY I G+P  YVLWYR
Sbjct: 121 HLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYR 180

Query: 181 PLYRAMRTDSALNFGWFFMFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLV 240
           PLYRA RTDSAL+FGWFF+FY +HI FCVFAA+APPVVF G+SL GIL AIDV S   +V
Sbjct: 181 PLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIV 240

Query: 241 GIFYLIGFAFFCLESLLSLWVLQKIYLYFRGN 269
           GIFY IGFAFFCLES++S+WV+Q++Y+YFRG+
Sbjct: 241 GIFYFIGFAFFCLESVVSIWVIQQVYMYFRGS 270

[Close]

BLAST of CmaCh16G011990 vs. TAIR 10
Match: AT1G32050.1 (SCAMP family protein )

HSP 1 Score: 382.1 bits (980), Expect = 3.7e-106
Identity = 195/271 (71.96%), Postives = 218/271 (80.44%), Query Frame = 0


Query: 1   MNRHNDPNPFDEGE--VNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNN 60
           MNRH+DPNPFDE E  VNPFSK         R+P   S  + +GQ  DATVDIPLD MN+
Sbjct: 1   MNRHHDPNPFDEDEEIVNPFSKGGG------RVP-AASRPVEYGQSLDATVDIPLDNMND 60

Query: 61  LRKNERDIAAWEAELNRKEKEIKKREEAVSRAGVPTDDRNWPPFFPIIHHDIANEIPVHA 120
             + +R +A WEAEL +KE +IK+REEA+++ GV  DD+NWPPFFPIIHHDIA EIPVHA
Sbjct: 61  SSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHA 120

Query: 121 QKLQYLAFASWLGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPL 180
           QKLQYLAFASWLGI LCLVFNVIA  VCWI+GGGV IF LA IYA++G PLSYVLWYRPL
Sbjct: 121 QKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGGVKIFFLATIYALIGCPLSYVLWYRPL 180

Query: 181 YRAMRTDSALNFGWFFMFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGI 240
           YRAMRTDSAL FGWFF  Y IHI FC+ AAIAPP+ FHG+SLTG+LAAIDV S  +L GI
Sbjct: 181 YRAMRTDSALKFGWFFFTYLIHIGFCIVAAIAPPIFFHGKSLTGVLAAIDVISDSLLAGI 240

Query: 241 FYLIGFAFFCLESLLSLWVLQKIYLYFRGNK 270
           FY IGF  FCLESLLSLWVLQKIYLYFRGNK
Sbjct: 241 FYFIGFGLFCLESLLSLWVLQKIYLYFRGNK 264

[Close]

BLAST of CmaCh16G011990 vs. TAIR 10
Match: AT1G61250.1 (secretory carrier 3 )

HSP 1 Score: 323.2 bits (827), Expect = 2.0e-88
Identity = 162/272 (59.56%), Postives = 212/272 (77.94%), Query Frame = 0


Query: 1   MNRHNDPNPF-DEGEVNPFSKDNAA-PGSKFRIPQMISDTLGFGQKQDATVDIPLDT--M 60
           M    DPNPF +E EVNPF+      P S  R+  +  + +GF   +  TVDIPLD    
Sbjct: 1   MANRYDPNPFAEEEEVNPFANARGVPPASNSRLSPLPPEPVGFDYGR--TVDIPLDRAGT 60

Query: 61  NNLRKNERDIAAWEAELNRKEKEIKKREEAVSRAGVPTDDRNWPPFFPIIHHDIANEIPV 120
            +L+K E+++ A EAEL R+E+++K++E+A +RAG+  + +NWPPFFP+IHHDIANEIPV
Sbjct: 61  QDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPV 120

Query: 121 HAQKLQYLAFASWLGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYR 180
           H Q+LQY+ FA++LG+ LCL +N+IA+T  WI+G GVTI+LLA+IY I G+P  YVLWYR
Sbjct: 121 HLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYR 180

Query: 181 PLYRAMRTDSALNFGWFFMFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLV 240
           PLYRA RTDSAL+FGWFF+FY +HI FCVFAA+APPVVF G+SL GIL AIDV S   +V
Sbjct: 181 PLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIV 240

Query: 241 GIFYLIGFAFFCLESLLSLWVLQKIYLYFRGN 269
           GIFY IGFAFFCLES++S+WV+Q++Y+YFRG+
Sbjct: 241 GIFYFIGFAFFCLESVVSIWVIQQVYMYFRGS 270

[Close]

BLAST of CmaCh16G011990 vs. TAIR 10
Match: AT2G20840.1 (Secretory carrier membrane protein (SCAMP) family protein )

HSP 1 Score: 317.0 bits (811), Expect = 1.5e-86
Identity = 148/268 (55.22%), Postives = 211/268 (78.73%), Query Frame = 0


Query: 1   MNRHNDPNPFDEGEVNPFSKDNAAPGSKFRIPQMISDTLGFGQKQDATVDIPLDTMNNLR 60
           M+R+   + FD+GE+NPF+   + P +  ++  +  +    G    AT+DIPLD+  +L+
Sbjct: 1   MSRYQS-HSFDDGEINPFANPTSVPAATSKLSPLPPEPYDRG----ATMDIPLDSGKDLK 60

Query: 61  KNERDIAAWEAELNRKEKEIKKREEAVSRAGVPTDDRNWPPFFPIIHHDIANEIPVHAQK 120
             E+++   EAEL R+E+EIK++E+A+++AG+  +++NWPPFFP+IHHDI+NEIP+H Q+
Sbjct: 61  AKEKELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQR 120

Query: 121 LQYLAFASWLGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYRPLYR 180
           +QY+AF S LG+ +CL++N++A+T  WI+G G TI+ LA+IY I G+P +YV+WYRPLYR
Sbjct: 121 IQYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYR 180

Query: 181 AMRTDSALNFGWFFMFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLVGIFY 240
           AMRTDSAL FGWFF  Y  HI FCVFAA+APP++F G+SLTGIL AIDV S ++LVGIFY
Sbjct: 181 AMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKSLTGILPAIDVLSGNILVGIFY 240

Query: 241 LIGFAFFCLESLLSLWVLQKIYLYFRGN 269
            IGF FFCLESL+S+WV+Q++Y+YFRG+
Sbjct: 241 FIGFGFFCLESLVSIWVIQQVYMYFRGS 263

[Close]

BLAST of CmaCh16G011990 vs. TAIR 10
Match: AT1G61250.2 (secretory carrier 3 )

HSP 1 Score: 308.5 bits (789), Expect = 5.2e-84
Identity = 157/263 (59.70%), Postives = 203/263 (77.19%), Query Frame = 0


Query: 1   MNRHNDPNPF-DEGEVNPFSKDNAA-PGSKFRIPQMISDTLGFGQKQDATVDIPLDT--M 60
           M    DPNPF +E EVNPF+      P S  R+  +  + +GF   +  TVDIPLD    
Sbjct: 1   MANRYDPNPFAEEEEVNPFANARGVPPASNSRLSPLPPEPVGFDYGR--TVDIPLDRAGT 60

Query: 61  NNLRKNERDIAAWEAELNRKEKEIKKREEAVSRAGVPTDDRNWPPFFPIIHHDIANEIPV 120
            +L+K E+++ A EAEL R+E+++K++E+A +RAG+  + +NWPPFFP+IHHDIANEIPV
Sbjct: 61  QDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPV 120

Query: 121 HAQKLQYLAFASWLGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLWYR 180
           H Q+LQY+ FA++LG+ LCL +N+IA+T  WI+G GVTI+LLA+IY I G+P  YVLWYR
Sbjct: 121 HLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYR 180

Query: 181 PLYRAMRTDSALNFGWFFMFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHVLV 240
           PLYRA RTDSAL+FGWFF+FY +HI FCVFAA+APPVVF G+SL GIL AIDV S   +V
Sbjct: 181 PLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIV 240

Query: 241 GIFYLIGFAFFCLESLLSLWVLQ 260
           GIFY IGFAFFCLES++S+WV+Q
Sbjct: 241 GIFYFIGFAFFCLESVVSIWVIQ 261

[Close]

BLAST of CmaCh16G011990 vs. TAIR 10
Match: AT1G11180.1 (Secretory carrier membrane protein (SCAMP) family protein )

HSP 1 Score: 304.3 bits (778), Expect = 9.8e-83
Identity = 155/274 (56.57%), Postives = 206/274 (75.18%), Query Frame = 0


Query: 1   MNRHNDPNPFDE-GEVNPFSKDNAAP-GSKFRIPQMISDTLGFGQKQDATVDIPLDT--- 60
           M    D N FDE  EVNPF+   + P  S  R+  +  +  GFG  +  TVDIPLD    
Sbjct: 1   MGGRYDRNTFDEQDEVNPFANPGSVPAASNSRLSPLPPEPAGFGYGR--TVDIPLDRPGS 60

Query: 61  -MNNLRKNERDIAAWEAELNRKEKEIKKREEAVSRAGVPTDDRNWPPFFPIIHHDIANEI 120
              +L+K E+++ A EA+L R+E+++K++++A +RAG+  + +NWP FFP+IHHDIANEI
Sbjct: 61  GAQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVIEAKNWPTFFPLIHHDIANEI 120

Query: 121 PVHAQKLQYLAFASWLGIGLCLVFNVIAITVCWIRGGGVTIFLLAVIYAILGIPLSYVLW 180
            V  Q+LQY+AFA++LG+ L L +N+IA+T  WI+G GVTI+LLAVIY I G+P  YVLW
Sbjct: 121 LVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVIYFISGVPGGYVLW 180

Query: 181 YRPLYRAMRTDSALNFGWFFMFYGIHILFCVFAAIAPPVVFHGQSLTGILAAIDVFSQHV 240
           YRPLYRA R+DSA NFGWFF+FY +HILFC+FAA+APP+VF G+SL GIL AIDV S   
Sbjct: 181 YRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIVFKGKSLAGILPAIDVLSAQA 240

Query: 241 LVGIFYLIGFAFFCLESLLSLWVLQKIYLYFRGN 269
           LVGIFY IGF  FCLES++S+WV+Q++Y+YFRG+
Sbjct: 241 LVGIFYFIGFGLFCLESVVSIWVIQQVYMYFRGS 272

The following BLAST results are available for this feature:

BLAST of CmaCh16G011990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C6X2	5.2e-105	71.96	Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q0JAI9	5.7e-96	63.60	Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica ...	[more]
Q6Z8F5	4.1e-94	61.57	Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica ...	[more]
Q7F613	4.4e-88	59.32	Secretory carrier-associated membrane protein 2 OS=Oryza sativa subsp. japonica ...	[more]
Q9M5P2	2.9e-87	59.56	Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmaCh16G011990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32050.1	3.7e-106	71.96	SCAMP family protein	[more]
AT1G61250.1	2.0e-88	59.56	secretory carrier 3	[more]
AT2G20840.1	1.5e-86	55.22	Secretory carrier membrane protein (SCAMP) family protein	[more]
AT1G61250.2	5.2e-84	59.70	secretory carrier 3	[more]
AT1G11180.1	9.8e-83	56.57	Secretory carrier membrane protein (SCAMP) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR10687:SF15	SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN 4	coord: 1..269
IPR007273	SCAMP	PFAM	PF04144	SCAMP	coord: 97..267 e-value: 5.5E-54 score: 183.1
IPR007273	SCAMP	PANTHER	PTHR10687	SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP	coord: 1..269

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G011990.1	CmaCh16G011990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0055038	recycling endosome membrane
cellular_component	GO:0032588	trans-Golgi network membrane
cellular_component	GO:0030658	transport vesicle membrane