CmaCh16G011970 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G011970
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	26S proteasome non-ATPase regulatory subunit 13 homolog A-like
Location	Cma_Chr16: 9115028 .. 9119018 (-)
RNA-Seq Expression	CmaCh16G011970
Synteny	CmaCh16G011970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGGTAAATACAACCTGCCTTCACATGCCTCAAAAAGGACCTTTACAGCTTATTATTTGTCAAAATATTGGCTTTGGGAGACAAAAAATGTGGGATAGGACAACTATTGGGTGTTTCCTCTTTTTTAATAAACAATTTTTTTTATTTAATAATAATTATATGTTACTTATCAAATTAAAAAAAAAAAAAAAATATATATATATATATATATATATATACATTTTATATGGAAACTAATTTTAAAAATAAATACCCAAATTCTTTTGTGTATAAAATATTCCAATTTTTTGGTAATTTTCTCTAAGAATTAAGTAAATAAATAAACATTTAATCTTTTTTTATTTTTTATTTTCCCAAAGAGATTAAAAAGTAAAAAATTGACGGTGATATGGCCAAACCCGACCCAAAAACCCATCACGGAGTCGGGTCGGTTCATTCCCACCCGACTCCATAAAGCCTCTCTCGTCTAAAGCTTCCTCTGCTTTTCTATTCTTTTCTTTGAGAACAAGAAAAAGAACAGAGGAAGAGGCACGAAATATATAAATCATTGGAGTTCTCTTTCTTCCTGTCTCCTTCCGAGAATCCATAGCCGGAGTAGCCATGGCCGCTTTGCTGTACCTCGATTCTCTTCGCAACTCGCATCCTGAGCTCGCTGAATGGTACAATACGCTAGCAGATCTGTACCAGAAGAAGCTTTGGCATCAGCTCACACTTAAGCTTGAGCAGTTCGTCGCTCTCACGGTCTTCCAGGTGTGTTTTTTCAACTTACCATGTTTTCGATGAATGTATTGACATTTCGATTTCATGAAGTGTGTGCTGGTATTTTAGCTTTTAGATGCTTTGATTTTTAGATGGATACTGTTAGGGTTTTGAGTCTGGGAATGTTAAAATTGAATTTATGATGGCGAAATGGATGGCGAACTTAGGGTTCTTTAGACGGAGAAGATCGCGGAGGTTGAAACTTTGAGGGGTTTTGCTTACAGGGGTTCGTTTAGCCTACTGGATTTCGTATTCGACTCCCGATTGGATTCAGAGTTGTCGAAATCTAAACTACGGTAGAAATTTCCCCCTGTTTATATCTGTAATATGAGCAAACTAGTTAAACAGATCGACTGAATACGGGGTGGTTAGTTGGAGAATTAATCATCTGTTTGAGGTGACTTGTGACTAATTTACTCATTTCTGAAGACTGGATTGAGTAGGTTAAGTTTTTGTTTCACTGAAGTAGATCAAGAAGTTTTGTGTTCCAATCTTTGCCTCATATTTTTCTCTCCATTTCATGTTCATAACCTGCTTGTTAGGTCTATTTGAGAGAGAGGTGTTGAGGCATTAACCGAAAGGCCAAAGTTACCTTTGTCACCATCAACATCTTAAGCTTTGGGGCTCGGTAATCTAACGTGCACTATCTGGATTTCAAGTTAACACTGTAGATTGGAGAATTAGATAGTAAGCATGAACTGGGTCTTTGTTACTACCTGAGTATGACTTCCCTGATTTCACCCATTTCTTAAAGAACATGACCACGGGATATTTAGAATTAAGGAGAGGATAATTGCTACATTCATCGGGTACTGATTTCGGTCTATCTAGAGCCGAAATAATTTTAAATTAGGTTGAGCTAGCTAATATATGTTTTATTTGGTGAATCCTTGTATATTTGAACATTTTTTACCTACCTGCCTTTATGCAGAAACCTCAAGTTCAATTAATATTTTTTTTTATGGTTAAATGTTCAGGCTGGTGATGCACTGATTCAGTTGTATCACAACTTCATCACTGATTTTGAGACCAAAATCAATCTTCTCAAGCTTGCACATTTTGCTGTGATTGTTTCTCGGCAATATGCAGAGAAAGAAGCTGCCATTAGTTATCTTGAAGGGATAATCGAGAAACTGAGGAGTACTAAAGAGCACCGCATAGAGGAGCCTATCCTTTATATTAAGATGCAAATAGCTATTTTTAAGCTTGAGCAAGGTGACCGAAAAGAGTGCAAGAAACTTTTGGAAGATGGAAAGAGCACTCTTGACAGCATGACTGACATCGATCCATCTGTTTATGCTAGCTATTATTGGGTTTCATCTCAATTTTACAAGTTCCGCCAAGAATTTGCTGAGTTCTATAAAAGTGCTCTTCTTTATCTCGCATATACTTCAGTGGAATCACTCTCAGACTCATTTAAATTGGTATGGCGAATAGTTTCTTTCTTTATGTACAGTTAACTTTTCTTTCTATTTCTTCTTTTTTTTTCCCTTTTCAAATAAGAAATAACTCATTTCATAAATCCAATTGCCCGTCGATCGGTACTTATCCGCTATCCATATTTGGTTCGTTCATTATTTAAATTATTGCCCGTCGCTGTGCCTGCAGGATTTGGCCTTTGATTTGTCTCTTTCTGCACTTTTGGGAGATAACATCTACAACTTTGGAGAGCTTCTTGCACATCCTATTGTAAGAATTTGCACCATAGTTCATTATTATTTTGCTATCTCATTGTGTAATAATTTTATGTTACCTCTGAGTGCTTATTTCCTTATTGGTCTTTTCTCCTTGAGGTGGAGTAATAAACATAAATATCACTCATTTTTTTTCAATAAATAATTTAGTTTGAGTGCAAATACAACGATCTTCGTACTTATAACATGATTAACAATGGCTGCAACAATTGGTATCTCTATGTAGATATTGTAGCCCGTGCCTAATCTTTTTGTCTCTATTTATTTTTCGACTTCAAACCTGATGTGTGTGTAACTTTTTCTCTTCAGATCAAAAGTCTGTTGGGCACAAAGGTCGAGTGGCTTTACTACATTCTTCAGGCATTCAATTCTGGTGATTTAGTTCGCTATCAAGAATTATGCCAAGTCCACAATGCAGCTTTAAGGGCTCAACCGGCTTTAGTTGAAAATGAAAAGAAACTATTGGAGAAAATCAATATTCTCTGCCTCATGGAAATTATCTTCAGGCATTGCCTTGCTCCTTTCTCTGCTTGATATCTGCTCAATAACTTGATTTTCTGTATCATTTTTGTGCTAATTTGATTTTATTGCAGCCGGTCATCTGAAGATCGAACCATTCCATTGAAGGTTATAGCCGAACGAACAAAACTTTCTATCGAGGATGTTGAGCATCTACTAATGAAGAGCCTGTCTGTAAGTTTTACTTATAGTTCTTTTTCACAAGAATATTTGTTTCAAATTTGTCCATGGACTTCGTCACTTCAAATTAAAATAGGGTCAAGAGAAATTGTGATGCTGGAAGAACGAAAAAAGTTGGATGTGATAATTGTCTTTTGCCACAACTTTCACGGCACTTGAGAAAAACCAACAGCCATGCACTCGCTTTTGGTTATCTGCTTGGTTAACATTGTATGCTGATCAATACCTCTCATGACATGTTTCATCTCTCCAGTCTTGTATCTCGATCTGTTCTTAACGAAATCCTTGTCTTCAACCTTCCTTACTGATTCGATAATTGCCATGATTGGAGAACTTGACCTTTGTTTTTCTGAGACGAATGATAACAAAAGGCTGAGTGATTTTTATTGCAGGTCCACCTTATAGAGGGTATCATCGATCAAGTCGAGGGAACGGTCCATGTTTCCTGGGTGCAACCAAGGGTTCTAGGCATTCCACAGATCAAATCCCTGCGAGACCGGCTGGACAGTTGGGTGGATAAAGTGCATTCAACTTTGCTTTCAGTCGAGGCCGAGACGCCTGATCTAGTTGCATCGTAATCCTCTTCATTGCATCTCTAAACAACTTAGCAGAGGGAGAAAGCAAAAAGCCAGAAGAAACTACTGATCCTTCATAAGATTCTAATGTGCTGGCTGGCCAGCTAGCCTCCAGCTTTCTTGAACTATTTTTTAGGAATCAGAAGCCTCTACGTCTTAGTTTTGAAAGTGAGCATGGATTGGAGGAGTTGAGAAACGGACTTAAAGAGTGGTTATTGGACTTCCCTTCTGTATTTGTTACTTTTGTTGCATACAATTGA

mRNA sequence

ATGTTAGTTCTCTTTCTTCCTGTCTCCTTCCGAGAATCCATAGCCGGAGTAGCCATGGCCGCTTTGCTGTACCTCGATTCTCTTCGCAACTCGCATCCTGAGCTCGCTGAATGGTACAATACGCTAGCAGATCTGTACCAGAAGAAGCTTTGGCATCAGCTCACACTTAAGCTTGAGCAGTTCGTCGCTCTCACGGTCTTCCAGGCTGGTGATGCACTGATTCAGTTGTATCACAACTTCATCACTGATTTTGAGACCAAAATCAATCTTCTCAAGCTTGCACATTTTGCTGTGATTGTTTCTCGGCAATATGCAGAGAAAGAAGCTGCCATTAGTTATCTTGAAGGGATAATCGAGAAACTGAGGAGTACTAAAGAGCACCGCATAGAGGAGCCTATCCTTTATATTAAGATGCAAATAGCTATTTTTAAGCTTGAGCAAGGTGACCGAAAAGAGTGCAAGAAACTTTTGGAAGATGGAAAGAGCACTCTTGACAGCATGACTGACATCGATCCATCTGTTTATGCTAGCTATTATTGGGTTTCATCTCAATTTTACAAGTTCCGCCAAGAATTTGCTGAGTTCTATAAAAGTGCTCTTCTTTATCTCGCATATACTTCAGTGGAATCACTCTCAGACTCATTTAAATTGGATTTGGCCTTTGATTTGTCTCTTTCTGCACTTTTGGGAGATAACATCTACAACTTTGGAGAGCTTCTTGCACATCCTATTATCAAAAGTCTGTTGGGCACAAAGGTCGAGTGGCTTTACTACATTCTTCAGGCATTCAATTCTGGTGATTTAGTTCGCTATCAAGAATTATGCCAAGTCCACAATGCAGCTTTAAGGGCTCAACCGGCTTTAGTTGAAAATGAAAAGAAACTATTGGAGAAAATCAATATTCTCTGCCTCATGGAAATTATCTTCAGCCGGTCATCTGAAGATCGAACCATTCCATTGAAGGTTATAGCCGAACGAACAAAACTTTCTATCGAGGATGTTGAGCATCTACTAATGAAGAGCCTGTCTGTCCACCTTATAGAGGGTATCATCGATCAAGTCGAGGGAACGGTCCATGTTTCCTGGGTGCAACCAAGGGTTCTAGGCATTCCACAGATCAAATCCCTGCGAGACCGGCTGGACAGTTGGGTGGATAAAGTGCATTCAACTTTGCTTTCAGTCGAGGCCGAGACGCCTGATCTACTAGCCTCCAGCTTTCTTGAACTATTTTTTAGGAATCAGAAGCCTCTACGTCTTAGTTTTGAAAGTGAGCATGGATTGGAGGAGTTGAGAAACGGACTTAAAGAGTGGTTATTGGACTTCCCTTCTGTATTTGTTACTTTTGTTGCATACAATTGA

Coding sequence (CDS)

ATGTTAGTTCTCTTTCTTCCTGTCTCCTTCCGAGAATCCATAGCCGGAGTAGCCATGGCCGCTTTGCTGTACCTCGATTCTCTTCGCAACTCGCATCCTGAGCTCGCTGAATGGTACAATACGCTAGCAGATCTGTACCAGAAGAAGCTTTGGCATCAGCTCACACTTAAGCTTGAGCAGTTCGTCGCTCTCACGGTCTTCCAGGCTGGTGATGCACTGATTCAGTTGTATCACAACTTCATCACTGATTTTGAGACCAAAATCAATCTTCTCAAGCTTGCACATTTTGCTGTGATTGTTTCTCGGCAATATGCAGAGAAAGAAGCTGCCATTAGTTATCTTGAAGGGATAATCGAGAAACTGAGGAGTACTAAAGAGCACCGCATAGAGGAGCCTATCCTTTATATTAAGATGCAAATAGCTATTTTTAAGCTTGAGCAAGGTGACCGAAAAGAGTGCAAGAAACTTTTGGAAGATGGAAAGAGCACTCTTGACAGCATGACTGACATCGATCCATCTGTTTATGCTAGCTATTATTGGGTTTCATCTCAATTTTACAAGTTCCGCCAAGAATTTGCTGAGTTCTATAAAAGTGCTCTTCTTTATCTCGCATATACTTCAGTGGAATCACTCTCAGACTCATTTAAATTGGATTTGGCCTTTGATTTGTCTCTTTCTGCACTTTTGGGAGATAACATCTACAACTTTGGAGAGCTTCTTGCACATCCTATTATCAAAAGTCTGTTGGGCACAAAGGTCGAGTGGCTTTACTACATTCTTCAGGCATTCAATTCTGGTGATTTAGTTCGCTATCAAGAATTATGCCAAGTCCACAATGCAGCTTTAAGGGCTCAACCGGCTTTAGTTGAAAATGAAAAGAAACTATTGGAGAAAATCAATATTCTCTGCCTCATGGAAATTATCTTCAGCCGGTCATCTGAAGATCGAACCATTCCATTGAAGGTTATAGCCGAACGAACAAAACTTTCTATCGAGGATGTTGAGCATCTACTAATGAAGAGCCTGTCTGTCCACCTTATAGAGGGTATCATCGATCAAGTCGAGGGAACGGTCCATGTTTCCTGGGTGCAACCAAGGGTTCTAGGCATTCCACAGATCAAATCCCTGCGAGACCGGCTGGACAGTTGGGTGGATAAAGTGCATTCAACTTTGCTTTCAGTCGAGGCCGAGACGCCTGATCTACTAGCCTCCAGCTTTCTTGAACTATTTTTTAGGAATCAGAAGCCTCTACGTCTTAGTTTTGAAAGTGAGCATGGATTGGAGGAGTTGAGAAACGGACTTAAAGAGTGGTTATTGGACTTCCCTTCTGTATTTGTTACTTTTGTTGCATACAATTGA

Protein sequence

MLVLFLPVSFRESIAGVAMAALLYLDSLRNSHPELAEWYNTLADLYQKKLWHQLTLKLEQFVALTVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKEHRIEEPILYIKMQIAIFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKFRQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCQVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRSSEDRTIPLKVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSWVDKVHSTLLSVEAETPDLLASSFLELFFRNQKPLRLSFESEHGLEELRNGLKEWLLDFPSVFVTFVAYN

Homology

[Close]

BLAST of CmaCh16G011970 vs. ExPASy Swiss-Prot
Match: Q8RWF0 (26S proteasome non-ATPase regulatory subunit 13 homolog A OS=Arabidopsis thaliana OX=3702 GN=RPN9A PE=1 SV=1)

HSP 1 Score: 658.7 bits (1698), Expect = 4.8e-188
Identity = 328/386 (84.97%), Postives = 368/386 (95.34%), Query Frame = 0


Query: 19  MAALLYLDSLRNSHPELAEWYNTLADLYQKKLWHQLTLKLEQFVALTVFQAGDALIQLYH 78
           MAAL YL+SL+N+HPEL EWYN+LADLYQKKLWHQLTLKLEQF+AL VFQAGDALIQ YH
Sbjct: 1   MAALQYLESLKNTHPELGEWYNSLADLYQKKLWHQLTLKLEQFIALAVFQAGDALIQFYH 60

Query: 79  NFITDFETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKEHRIEEPILYIKM 138
           NFITDFETKINLLKLAHFAV+VSRQY+EKEAA+SYLE +IEKLR+TKE RI EPI+YI+ 
Sbjct: 61  NFITDFETKINLLKLAHFAVVVSRQYSEKEAAVSYLESVIEKLRATKEPRITEPIIYIET 120

Query: 139 QIAIFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKFRQEFAEFYKS 198
           Q A+FKLEQGD+KECKK+L+DGKS+LDSMTDIDPSVYA++YWVSSQ++K RQEF++FYKS
Sbjct: 121 QKALFKLEQGDQKECKKILDDGKSSLDSMTDIDPSVYANFYWVSSQYHKCRQEFSDFYKS 180

Query: 199 ALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYY 258
           ALLYLAYTSVE LS+SFKLDLAFDLSLSALLG+NIYNFGELLAHPI+KSLLGT VEWLY+
Sbjct: 181 ALLYLAYTSVEDLSESFKLDLAFDLSLSALLGENIYNFGELLAHPILKSLLGTNVEWLYH 240

Query: 259 ILQAFNSGDLVRYQELCQVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRSSEDRTI 318
           ILQAFN GDLV+YQELC+VHNA+L AQPALVENEKKLLEKINILCL+EIIFSR +EDRTI
Sbjct: 241 ILQAFNHGDLVQYQELCRVHNASLIAQPALVENEKKLLEKINILCLIEIIFSRPAEDRTI 300

Query: 319 PLKVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRD 378
           PL +IAERTKLSIEDVEHLLMKSLSVHLIEGIIDQV GT++VSW QPRVLGIPQIK+LRD
Sbjct: 301 PLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVNGTIYVSWAQPRVLGIPQIKALRD 360

Query: 379 RLDSWVDKVHSTLLSVEAETPDLLAS 405
           +LDSWVDKVH+TLLSVEAETPDL+A+
Sbjct: 361 QLDSWVDKVHTTLLSVEAETPDLVAA 386

[Close]

BLAST of CmaCh16G011970 vs. ExPASy Swiss-Prot
Match: Q8GYA6 (26S proteasome non-ATPase regulatory subunit 13 homolog B OS=Arabidopsis thaliana OX=3702 GN=RPN9B PE=1 SV=1)

HSP 1 Score: 657.1 bits (1694), Expect = 1.4e-187
Identity = 328/386 (84.97%), Postives = 369/386 (95.60%), Query Frame = 0


Query: 19  MAALLYLDSLRNSHPELAEWYNTLADLYQKKLWHQLTLKLEQFVALTVFQAGDALIQLYH 78
           MAAL YL+S +N+HPEL EWYN+LADLYQKKLWHQLTLKLEQF+AL+VFQAGDALIQLY+
Sbjct: 1   MAALQYLESQKNAHPELGEWYNSLADLYQKKLWHQLTLKLEQFIALSVFQAGDALIQLYN 60

Query: 79  NFITDFETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKEHRIEEPILYIKM 138
           NFITDFET+INLLKLAHFAV+VSRQY EKEAA+SYLEG+IEKL++TKE RI EPI YI+ 
Sbjct: 61  NFITDFETRINLLKLAHFAVVVSRQYPEKEAAVSYLEGVIEKLKATKESRINEPISYIET 120

Query: 139 QIAIFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKFRQEFAEFYKS 198
           QIA+FKLEQGD+KECKK+L+DGKS LDSMTDIDPSVYA+++WVSSQ++K RQEF+EFYK+
Sbjct: 121 QIALFKLEQGDQKECKKILDDGKSLLDSMTDIDPSVYANFFWVSSQYHKVRQEFSEFYKN 180

Query: 199 ALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYY 258
           ALLYLAYTSV+SLS+SFKLDLAFDLSLSALLG+NIYNFGELLAHPI+KSLLGT VEWLY+
Sbjct: 181 ALLYLAYTSVDSLSESFKLDLAFDLSLSALLGENIYNFGELLAHPILKSLLGTNVEWLYH 240

Query: 259 ILQAFNSGDLVRYQELCQVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRSSEDRTI 318
           ILQAFN GDLV+YQELC+VHNA+L AQPALVENEKKLLEKINILCL+EIIFSR +EDRTI
Sbjct: 241 ILQAFNHGDLVQYQELCRVHNASLSAQPALVENEKKLLEKINILCLIEIIFSRPAEDRTI 300

Query: 319 PLKVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRD 378
           PL VIAERTKLSIEDVEHLLMKSLSVHLIEGI+DQV GTV+VSW QPRVLGIPQIKSLRD
Sbjct: 301 PLSVIAERTKLSIEDVEHLLMKSLSVHLIEGILDQVNGTVYVSWAQPRVLGIPQIKSLRD 360

Query: 379 RLDSWVDKVHSTLLSVEAETPDLLAS 405
           +LDSWVDKVH+TLLSVEAETPDL+A+
Sbjct: 361 QLDSWVDKVHTTLLSVEAETPDLVAA 386

[Close]

BLAST of CmaCh16G011970 vs. ExPASy Swiss-Prot
Match: Q54NQ0 (26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum OX=44689 GN=psmD13 PE=2 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 1.5e-72
Identity = 147/382 (38.48%), Postives = 235/382 (61.52%), Query Frame = 0


Query: 22  LLYLDSLRNSHPELAEWYNTLADLYQKKLWHQLTLKLEQFVALTVFQAGDALIQLYHNFI 81
           L YL+ L+   P+L++  N + D Y+ KLWHQLT ++E  +          L   Y NFI
Sbjct: 7   LEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFNFYTNFI 66

Query: 82  TDFETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKEHRIEEPILYIKMQIA 141
            DFE K+  L L    + V+RQ+   E+   ++E I +K++  K   I        M + 
Sbjct: 67  RDFENKLRPLSLVEICIAVARQFDTDESR-KFIETISQKVKKDKSAYILTLSYIANMNLR 126

Query: 142 IFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKFRQEFAEFYKSALL 201
               EQ   ++CKK LE  K  L  +T +D  VY+S+Y VS+ ++  + + +EFYK+AL+
Sbjct: 127 SGVAEQ--LQDCKKTLELAKEELQGVTGLDTIVYSSFYRVSTDYHMAKSQASEFYKNALM 186

Query: 202 YLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQ 261
           YL+Y  +E++S   +  LA++L ++AL+G+N+Y FG+L+A+PI+K+L G++  WL   L+
Sbjct: 187 YLSYCKLETISQEEQASLAYNLCIAALVGENVYGFGDLIANPILKALEGSQHNWLIAFLK 246

Query: 262 AFNSGDLVRYQELCQVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRSSEDRTIPLK 321
           AFN GD+ +++ L   H   +  Q A+  N +KL +KI+IL L+E+ F   S+ R+I   
Sbjct: 247 AFNIGDIQQFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSISFS 306

Query: 322 VIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLD 381
            IA+ TKL + ++EHLLMKSLS++LI+G IDQ    +H++WV PR+L + QI S+ +R+ 
Sbjct: 307 KIAQATKLPLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRILDLNQINSMNNRIA 366

Query: 382 SWVDKVHSTLLSVEAETPDLLA 404
            W +K  ++L  VE +T DL+A
Sbjct: 367 EWTEKAKTSLRLVEDDTVDLVA 385

[Close]

BLAST of CmaCh16G011970 vs. ExPASy Swiss-Prot
Match: B0BN93 (26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus OX=10116 GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 2.8e-71
Identity = 154/379 (40.63%), Postives = 234/379 (61.74%), Query Frame = 0


Query: 24  YLDSLRNSHPELAEWYNTLADLYQKKLWHQLTLKLEQFVALTVFQAGDALIQLYHNFITD 83
           +L   ++S P  A  ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++
Sbjct: 7   FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISE 66

Query: 84  FETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKEHRIEEPILYIKMQIAIF 143
           FE ++N L L    + V RQ  +   A+++LE   EK++S+     +E ++  K  I   
Sbjct: 67  FEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGAL 126

Query: 144 KLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKFRQEFAEFYKSALLYL 203
           KL  GD +  K+ +ED +  L+++  +  SV++ +Y +SS++Y+     A +YK AL +L
Sbjct: 127 KLNIGDLQATKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 186

Query: 204 AYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAF 263
               ++ L  S + + AF L L+ LLG+ ++NFGELL HP+++SL  T  +WL   L AF
Sbjct: 187 GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAF 246

Query: 264 NSGDLVRYQELCQVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRSSEDRTIPLKVI 323
           NSGD+ R+Q L     +A   QP L  NE +LL KI +LCLME+ F+R +  R +  + I
Sbjct: 247 NSGDVDRFQTL----KSAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEI 306

Query: 324 AERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 383
           A+  K+++  VE L+MK+LSV L+ G ID+V+  VH++WVQPRVL + QIK ++DRL+ W
Sbjct: 307 AKSAKITVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLELW 366

Query: 384 VDKVHSTLLSVEAETPDLL 403
              V S  L VE +  D+L
Sbjct: 367 CTDVKSMELLVEHQAQDIL 375

[Close]

BLAST of CmaCh16G011970 vs. ExPASy Swiss-Prot
Match: Q5E964 (26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus OX=9913 GN=PSMD13 PE=2 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 3.7e-71
Identity = 154/379 (40.63%), Postives = 233/379 (61.48%), Query Frame = 0


Query: 24  YLDSLRNSHPELAEWYNTLADLYQKKLWHQLTLKLEQFVALTVFQAGDALIQLYHNFITD 83
           +L   ++S P  A  ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++
Sbjct: 7   FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISE 66

Query: 84  FETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKEHRIEEPILYIKMQIAIF 143
           FE ++N L L    + V RQ  +   A+S+LE   EK++S+     +E ++  K  I   
Sbjct: 67  FEHRVNPLSLVEIILHVVRQMTDPNVALSFLEKTREKVKSS-----DEAVILCKTAIGAL 126

Query: 144 KLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKFRQEFAEFYKSALLYL 203
           KL  GD +  K+ +ED +  L ++  +  SV++ +Y +SS++Y+     A +YK AL +L
Sbjct: 127 KLNIGDLQVTKETIEDVEEMLSNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFL 186

Query: 204 AYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAF 263
               ++ L  S + + AF L L+ LLGD ++NFGELL HP+++SL  T  +WL   L AF
Sbjct: 187 GCVDIKDLPVSEQQERAFTLGLAGLLGDGVFNFGELLMHPVLESLRDTDRQWLIDTLYAF 246

Query: 264 NSGDLVRYQELCQVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRSSEDRTIPLKVI 323
           NSG++ R+Q L      A   QP L  NE +LL KI +LCLME+ F+R +  R +  + I
Sbjct: 247 NSGNVERFQTL----KTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEI 306

Query: 324 AERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDRLDSW 383
           A   K+++ +VE L+MK+LSV L++G ID+V+  VH++WVQPRVL + QIK ++DRL+ W
Sbjct: 307 ARSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFW 366

Query: 384 VDKVHSTLLSVEAETPDLL 403
              V S  + VE +  D+L
Sbjct: 367 CTDVKSMEMLVEHQAHDIL 375

[Close]

BLAST of CmaCh16G011970 vs. TAIR 10
Match: AT5G45620.1 (Proteasome component (PCI) domain protein )

HSP 1 Score: 658.7 bits (1698), Expect = 3.4e-189
Identity = 328/386 (84.97%), Postives = 368/386 (95.34%), Query Frame = 0


Query: 19  MAALLYLDSLRNSHPELAEWYNTLADLYQKKLWHQLTLKLEQFVALTVFQAGDALIQLYH 78
           MAAL YL+SL+N+HPEL EWYN+LADLYQKKLWHQLTLKLEQF+AL VFQAGDALIQ YH
Sbjct: 1   MAALQYLESLKNTHPELGEWYNSLADLYQKKLWHQLTLKLEQFIALAVFQAGDALIQFYH 60

Query: 79  NFITDFETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKEHRIEEPILYIKM 138
           NFITDFETKINLLKLAHFAV+VSRQY+EKEAA+SYLE +IEKLR+TKE RI EPI+YI+ 
Sbjct: 61  NFITDFETKINLLKLAHFAVVVSRQYSEKEAAVSYLESVIEKLRATKEPRITEPIIYIET 120

Query: 139 QIAIFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKFRQEFAEFYKS 198
           Q A+FKLEQGD+KECKK+L+DGKS+LDSMTDIDPSVYA++YWVSSQ++K RQEF++FYKS
Sbjct: 121 QKALFKLEQGDQKECKKILDDGKSSLDSMTDIDPSVYANFYWVSSQYHKCRQEFSDFYKS 180

Query: 199 ALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYY 258
           ALLYLAYTSVE LS+SFKLDLAFDLSLSALLG+NIYNFGELLAHPI+KSLLGT VEWLY+
Sbjct: 181 ALLYLAYTSVEDLSESFKLDLAFDLSLSALLGENIYNFGELLAHPILKSLLGTNVEWLYH 240

Query: 259 ILQAFNSGDLVRYQELCQVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRSSEDRTI 318
           ILQAFN GDLV+YQELC+VHNA+L AQPALVENEKKLLEKINILCL+EIIFSR +EDRTI
Sbjct: 241 ILQAFNHGDLVQYQELCRVHNASLIAQPALVENEKKLLEKINILCLIEIIFSRPAEDRTI 300

Query: 319 PLKVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRD 378
           PL +IAERTKLSIEDVEHLLMKSLSVHLIEGIIDQV GT++VSW QPRVLGIPQIK+LRD
Sbjct: 301 PLSIIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVNGTIYVSWAQPRVLGIPQIKALRD 360

Query: 379 RLDSWVDKVHSTLLSVEAETPDLLAS 405
           +LDSWVDKVH+TLLSVEAETPDL+A+
Sbjct: 361 QLDSWVDKVHTTLLSVEAETPDLVAA 386

[Close]

BLAST of CmaCh16G011970 vs. TAIR 10
Match: AT4G19006.1 (Proteasome component (PCI) domain protein )

HSP 1 Score: 657.1 bits (1694), Expect = 1.0e-188
Identity = 328/386 (84.97%), Postives = 369/386 (95.60%), Query Frame = 0


Query: 19  MAALLYLDSLRNSHPELAEWYNTLADLYQKKLWHQLTLKLEQFVALTVFQAGDALIQLYH 78
           MAAL YL+S +N+HPEL EWYN+LADLYQKKLWHQLTLKLEQF+AL+VFQAGDALIQLY+
Sbjct: 1   MAALQYLESQKNAHPELGEWYNSLADLYQKKLWHQLTLKLEQFIALSVFQAGDALIQLYN 60

Query: 79  NFITDFETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKEHRIEEPILYIKM 138
           NFITDFET+INLLKLAHFAV+VSRQY EKEAA+SYLEG+IEKL++TKE RI EPI YI+ 
Sbjct: 61  NFITDFETRINLLKLAHFAVVVSRQYPEKEAAVSYLEGVIEKLKATKESRINEPISYIET 120

Query: 139 QIAIFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKFRQEFAEFYKS 198
           QIA+FKLEQGD+KECKK+L+DGKS LDSMTDIDPSVYA+++WVSSQ++K RQEF+EFYK+
Sbjct: 121 QIALFKLEQGDQKECKKILDDGKSLLDSMTDIDPSVYANFFWVSSQYHKVRQEFSEFYKN 180

Query: 199 ALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYY 258
           ALLYLAYTSV+SLS+SFKLDLAFDLSLSALLG+NIYNFGELLAHPI+KSLLGT VEWLY+
Sbjct: 181 ALLYLAYTSVDSLSESFKLDLAFDLSLSALLGENIYNFGELLAHPILKSLLGTNVEWLYH 240

Query: 259 ILQAFNSGDLVRYQELCQVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRSSEDRTI 318
           ILQAFN GDLV+YQELC+VHNA+L AQPALVENEKKLLEKINILCL+EIIFSR +EDRTI
Sbjct: 241 ILQAFNHGDLVQYQELCRVHNASLSAQPALVENEKKLLEKINILCLIEIIFSRPAEDRTI 300

Query: 319 PLKVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRD 378
           PL VIAERTKLSIEDVEHLLMKSLSVHLIEGI+DQV GTV+VSW QPRVLGIPQIKSLRD
Sbjct: 301 PLSVIAERTKLSIEDVEHLLMKSLSVHLIEGILDQVNGTVYVSWAQPRVLGIPQIKSLRD 360

Query: 379 RLDSWVDKVHSTLLSVEAETPDLLAS 405
           +LDSWVDKVH+TLLSVEAETPDL+A+
Sbjct: 361 QLDSWVDKVHTTLLSVEAETPDLVAA 386

[Close]

BLAST of CmaCh16G011970 vs. TAIR 10
Match: AT5G45620.2 (Proteasome component (PCI) domain protein )

HSP 1 Score: 552.4 bits (1422), Expect = 3.5e-157
Identity = 277/328 (84.45%), Postives = 311/328 (94.82%), Query Frame = 0


Query: 19  MAALLYLDSLRNSHPELAEWYNTLADLYQKKLWHQLTLKLEQFVALTVFQAGDALIQLYH 78
           MAAL YL+SL+N+HPEL EWYN+LADLYQKKLWHQLTLKLEQF+AL VFQAGDALIQ YH
Sbjct: 1   MAALQYLESLKNTHPELGEWYNSLADLYQKKLWHQLTLKLEQFIALAVFQAGDALIQFYH 60

Query: 79  NFITDFETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKEHRIEEPILYIKM 138
           NFITDFETKINLLKLAHFAV+VSRQY+EKEAA+SYLE +IEKLR+TKE RI EPI+YI+ 
Sbjct: 61  NFITDFETKINLLKLAHFAVVVSRQYSEKEAAVSYLESVIEKLRATKEPRITEPIIYIET 120

Query: 139 QIAIFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKFRQEFAEFYKS 198
           Q A+FKLEQGD+KECKK+L+DGKS+LDSMTDIDPSVYA++YWVSSQ++K RQEF++FYKS
Sbjct: 121 QKALFKLEQGDQKECKKILDDGKSSLDSMTDIDPSVYANFYWVSSQYHKCRQEFSDFYKS 180

Query: 199 ALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYY 258
           ALLYLAYTSVE LS+SFKLDLAFDLSLSALLG+NIYNFGELLAHPI+KSLLGT VEWLY+
Sbjct: 181 ALLYLAYTSVEDLSESFKLDLAFDLSLSALLGENIYNFGELLAHPILKSLLGTNVEWLYH 240

Query: 259 ILQAFNSGDLVRYQELCQVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRSSEDRTI 318
           ILQAFN GDLV+YQELC+VHNA+L AQPALVENEKKLLEKINILCL+EIIFSR +EDRTI
Sbjct: 241 ILQAFNHGDLVQYQELCRVHNASLIAQPALVENEKKLLEKINILCLIEIIFSRPAEDRTI 300

Query: 319 PLKVIAERTKLSIEDVEHLLMKSLSVHL 347
           PL +IAERTKLSIEDVEHLLMKSLSV +
Sbjct: 301 PLSIIAERTKLSIEDVEHLLMKSLSVSI 328

[Close]

BLAST of CmaCh16G011970 vs. TAIR 10
Match: AT3G02200.2 (Proteasome component (PCI) domain protein )

HSP 1 Score: 52.4 bits (124), Expect = 1.1e-06
Identity = 50/197 (25.38%), Postives = 98/197 (49.75%), Query Frame = 0


Query: 205 YTSVESLSDSFKLDLAFDLSLSALL----GDNIYNFGELLAHPIIKSL-LGTKVEWLYYI 264
           Y +  S  D+  LD A + ++ A++      +I+   +LL  P +  L    K   +Y +
Sbjct: 204 YLATFSNEDAQVLDEAKEEAVRAVIEFVKASSIFQC-DLLDLPAVAQLEKDAKYAPVYQL 263

Query: 265 LQAFNSGDLVRYQELCQVHNAALRAQPALVENEKKLLEKINILCLMEIIFSRSSEDRTIP 324
           L+ F +  L  Y E    ++  L++      + +  + K+ +L L+++    S E   IP
Sbjct: 264 LKIFLTQRLNAYTEFQNANSGFLQSYGL---SNEDCVTKMRLLSLVDL---ASDESGKIP 323

Query: 325 LKVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIPQIKSLRDR 384
              I +  +++ +DVE  ++K+++  LIE  +DQ+   + VS    R  G  Q +SLR +
Sbjct: 324 YTSIKDTLQVNEQDVELWIVKAITAKLIECKMDQMNQVLIVSRSSEREFGTKQWQSLRTK 383

Query: 385 LDSWVDKVHSTLLSVEA 397
           L +W D + S + ++E+
Sbjct: 384 LATWKDNISSIITTIES 393

[Close]

BLAST of CmaCh16G011970 vs. TAIR 10
Match: AT5G15610.2 (Proteasome component (PCI) domain protein )

HSP 1 Score: 48.1 bits (113), Expect = 2.1e-05
Identity = 55/216 (25.46%), Postives = 105/216 (48.61%), Query Frame = 0


Query: 187 KFRQEFAEFYKSALLYLA-YTSVESLSDSFKLDLAFDLSLSALL----GDNIYNFGELLA 246
           K  +E   F K +L ++  Y +  S  D+  L  A + ++ A++      +I+   +LL 
Sbjct: 185 KVLRENKSFAKESLQFVTNYLATFSNEDTQVLSEAKEEAVRAVIEFVKAPSIFQC-DLLD 244

Query: 247 HPIIKSL-LGTKVEWLYYILQAFNSGDLVRYQELCQVHNAALRAQPALVENEKKLLEKIN 306
           HP +  L        +Y +L+ F +  L  Y E    ++  L+    LVE +   + K+ 
Sbjct: 245 HPAVAQLEKDPNNAPVYQLLKIFLTQRLDAYMEFQNANSGFLQTY-GLVEED--CVAKMR 304

Query: 307 ILCLMEIIFSRSSEDRTIPLKVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHV 366
           +L L+++    S +   IP   I    +++ E+VE  ++K+++  L+   +DQ+   V V
Sbjct: 305 LLSLVDL---ASDDSGKIPYASIKNTLQVNDEEVELWVVKAITAKLVACKMDQMNQVVIV 364

Query: 367 SWVQPRVLGIPQIKSLRDRLDSWVDKVHSTLLSVEA 397
           S    R  G  Q +SLR +L +W D V + + ++E+
Sbjct: 365 SRCAEREFGQKQWQSLRTKLAAWRDNVRNVISTIES 393

The following BLAST results are available for this feature:

BLAST of CmaCh16G011970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWF0	4.8e-188	84.97	26S proteasome non-ATPase regulatory subunit 13 homolog A OS=Arabidopsis thalian...	[more]
Q8GYA6	1.4e-187	84.97	26S proteasome non-ATPase regulatory subunit 13 homolog B OS=Arabidopsis thalian...	[more]
Q54NQ0	1.5e-72	38.48	26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum OX=4...	[more]
B0BN93	2.8e-71	40.63	26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus OX=10116 GN...	[more]
Q5E964	3.7e-71	40.63	26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus OX=9913 GN=PSMD13 ...	[more]

BLAST of CmaCh16G011970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45620.1	3.4e-189	84.97	Proteasome component (PCI) domain protein	[more]
AT4G19006.1	1.0e-188	84.97	Proteasome component (PCI) domain protein	[more]
AT5G45620.2	3.5e-157	84.45	Proteasome component (PCI) domain protein	[more]
AT3G02200.2	1.1e-06	25.38	Proteasome component (PCI) domain protein	[more]
AT5G15610.2	2.1e-05	25.46	Proteasome component (PCI) domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000717	Proteasome component (PCI) domain	SMART	SM00088	PINT_4	coord: 290..383 e-value: 2.5E-12 score: 56.9
IPR000717	Proteasome component (PCI) domain	PFAM	PF01399	PCI	coord: 256..361 e-value: 1.4E-10 score: 41.6
IPR000717	Proteasome component (PCI) domain	PROSITE	PS50250	PCI	coord: 192..365 score: 28.115528
None	No IPR available	SMART	SM00753	PINT	coord: 290..383 e-value: 2.5E-12 score: 56.9
None	No IPR available	GENE3D	1.25.40.570		coord: 240..361 e-value: 1.4E-5 score: 26.4
None	No IPR available	PANTHER	PTHR10539:SF5	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B	coord: 19..403
IPR035298	26S Proteasome non-ATPase regulatory subunit 13	PANTHER	PTHR10539	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13	coord: 19..403
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 292..366

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G011970.1	CmaCh16G011970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0008541	proteasome regulatory particle, lid subcomplex
molecular_function	GO:0005198	structural molecule activity