CmaCh16G011880 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G011880
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	inactive poly [ADP-ribose] polymerase RCD1
Location	Cma_Chr16: 9074450 .. 9082303 (-)
RNA-Seq Expression	CmaCh16G011880
Synteny	CmaCh16G011880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTATTTTCTTTTTTTCTTTTTTCTTTTTTTTTTTTCCTTGCTTGTTCTTCGTTCCTTGACCTTCTTTTCTTTTCTTTTCTTTTACTGCAAATTGAAACCCAGCGGATGGTTATGTTATTTTGTGTTACATGTGAAATTAATGGTAAGATTTTGGTTCTCTTGTTTTTCGCAATTTTTTTTAAAGTTCCGATTGTGTTTTCAGGCTTTAATCCTCCTGTTTATGGCTGTATTTAGATTTTTGAGTTTAGGAGTGTTAATTTATTAGTCAAAGCTGATAAAAACCTGCGGGTGACTCCGATCTATTCGATCTCAGTCATTTTGGTTAATTTTTCATGGCAGTTTTAGGTTATTTTTGTGAATTTTCGTTTGGTTTGAGACTTTGAGTTGAATGATTGGTTATGGTATTCCTAATTTAAGTGCAGCAATTTTCATTAGTTACTGGATTATTTAGGACATAGCAAGATTTTAGTATCGGTTTAAGTGGATGGGAGGAAATATTTGGCTGTCAATTTTAAGATCAGTGTAGCATCAACTGTTGAAGCTCTTTTGTGTTATATTGTTTATTTACTTTATTTTTATACATTTTTATGAAGCAATAATCGACTTTAAGCCTTTTAGTTGCACCTTGTAATCTCAACTAGTTTTGCTGTGACAACAAAATCCCATTTTGTCCTCCTCTTGTCTCCATTTTGTCTTAATTTATTTCCACTGATCCATGCTTTCAACTTCAGCATGCATTTGAATAAGCACATCACGACACAGCTGTGGACAATTATGTCTATTGAATGCCCCCAGACTCTTAAAACTTGAGGATTCTTTACATTCTTCGATTAGGCAACAAGAATTTTCTAGAGTCAAATTTGATGCTCCCTCCCCCTCCAATAAAAGGGGGTAAAAAATAGCAAATTTAAAGTTCCTTCCTGATGAATTTAGATTTTACCTGAAAAAGTGGTGTAAGCATAGTGCCTTTACTCAATTGCTCTGATCTAGTATGAAGGTGACTCTGGTAATGCCTTCTCATTGAAGAATTAGGCATAGGTTAGCATGTTTAGATTTTCTCCAACATTAATCTATAGTTTTATTCTTTCAAATTTACATGAATATTTTTTGTACATCAAGTTTAATTATGCTGCATCTTGCAGTTTTGGAAGATTTTTGGTCATAAGAATCTATTTCTAAGAATCTCTTTTTCTTTCTTAGCATGAATGGATAGTATACTATTTATTATCTTCCTCATAATAATGAAAAAACCTTCAAGAGCCCCACCTCAATGGTGTGGTCCATTCTTGCTATTTTCAAATATTTATGGTTCTTCTTGTATTACATGTTCTACATCTGATTTATTTGGATGTCCATCGCAAAACTTATGTTTCAAAGTTCTAGGAAAGAGCTGAGCATCTTAATCTTGATTGGAAGATCATGCGTGTGGAAGAAGTCTAATTTAAAAAATAAATGACGTCCTTTTTGGCTTAGACTACTAAATGTGAAAAAATAATCTGAGGTTTAGGCTTAAATTTTCGCACACCTCCAAATGTGAAAATAAACTTTTATCACTTATTCTAAATTTTCTTTCTGATGTTTGTCCACATAATTTGTCTAGTGTTTATGATTTCTTGACATTTTCTCATTTCATGGCCATATTTTCACTTTCCAGGGTTTTCCAAGATACATGGATTTCTTCATAAGTCCAGTTAATGTATAGGGTGTTCTCCGGATTTGTGACACATTTTTTGGTTTGAAGTTGGGTTTAGATATTAGTGTAGGTAGTAAAAATGAAAGACAGGATCGCAAAGGTATTGGGTAGCCAGAGAGTTGCACTTGCTTTAAAAAGAAAGCGAGCAGAACAGTTTGGTGCATATTCAGCAGAACCAGTCTGCATGGAGCACCAGTGGCCTACCTTGACTTCATTAAGTAGGGTGGGAAAGAGACGGAAGCTAGGTGGATGTAGCAGCAGATTTGCAAACTCTGAAACTCGTTTTAAACCCTTGTACAGAGGTTATTCAAATTTTATGAAAAGTGGGATACCAAAACACATAATGTTTTATGAGAATGGTGAGTGGATTAAATTTCCCCGTGATCTTCTTGATTTGGTTGTGGAAGATATGCAGGTGAAGAAAGCATCTTTGGAAATTAAGTTTAACGGACAGCACTGTGTTCTAGACTTTTTGCATATGTTTTTTTTGGACTTAAATACGGGGTTGCAACAACCTCTTGCATGGATTGATGCAGCAGGGAGATGCTTCTTTCCTGAGATTTATTGTGCAGATACAAATGAATGCTGCCATTCCAATAATTTTGAAAATAAAGAACCACAGGTTGAAGAAACTCATGGGTCTAATGTAATCAAGTTGCAGTTGGAAATTGAAATAGGTGGAGTTGACCGATCGAGTTTGAAGGTGTGTAGTGGGGAGTCAAATGATTATGTCAAGCCGTCTGGACCTGACCAAGAACTTGCTTATGACCGTGATATGGAAGAAGTTGGGGATAGTTGTGGTAGAATACCTATTGGAAAAACATATGGCGTTGTACCAGAACTTAAAGAATTGGATGTAAACCTCATCTCTGGGACTCAATATGTGAACGGAGGATTGGATACCAGAACCGTGGAGAAAATATTTCGTGATGGAATGATGAGCTCTGATGGTAGTGTAGAGATACTTAATATAAAACACTGCATTGACGCTTCAATGCAATCTCAATTAGAGCTTTTCAATAAGCAAATAGAAATTATCAAAGTGTACAGAGGGGATGCAAATGTTCGTTATGCTTGGCTTCCTGTTTCTAAAACAGAAGTATCTAGCTTGATGATGCATGGAATTGGGCATTGTGGGGTTTCTTCAATCAGATCCATATATGGCACTGGTGTTCACCTCACAGCGGTCAATTGCTCAAATGTCAGGTGGTTAAATTTTTTCAGAACAATAATCATCTTTTATATGATTTTGAACTCGTATAAAGTATGTGTTGGCTACCATCTTCTCTTAATGTTTGAGATCCCCTATTTGTTTGTGCCATTGGGGGAGGATTTTTTTAAAGAAAAAAATTATTTTAATGTGCCTCTGTTACCCTCTTCTTGGATTTACATTTATTGTTAAGAAAAATAATTATTTTATTTATTTTCCATAAAAAAACTCAACTTTTTTAATGTTTGCAGTTCTTTTACCATCTTCTCTTAGGGTATGTTTTGAGTGATTTTATCATTTGTGCACAGTGATTTCCGGTTTCTTGAAAAGTGTTTTCAAGTGATTTTTGTCAATTGGTGGCCGAGAGAATTGGTTTCTGAATGACTATTACTTTGGTTTAGTGGACTAGAAATATATATAACTCTTCCAACTCAGTAAACTTTTGTCTTATTATTCATCCACCTGCCCTACATGTTTTGCTTATTGTTCATCTTGCACGACAATTTCAAATAATGTATCTATGTTGACTGGTATTTCTCATGTTACAATTTGTCCTATGCTTGGTAAATGCATACCATATTGCTTTCAGAAGATTTGATCTTTTGTTTATTTACAGTGCAAGTCATTGCGATATTGATGACAATGGAGTGCAGCATCTAGTATTTTGCCGTGTAATATTGGGAAACTTGGAACTTCTTCACCCTGGAAGCAGACAATTCCATCCAAGTAGCAAGGATTTTGACTGTGGAGTGGACAACCTTAAAGAACCAACATATTACGTTGTATGGAGAATGAATATGTGTACTCACATCTATCCAGAATCTGTTGTCAGCTTTAAGGTTGCTCCCAGTCCCAAAGGTGACCATCTTCCCTGGTTTCACTGTTTGTTGGGAGGAGAAAGTGACTCAATTCTTATTTGAACTAGTAGGAATCTAATAGTGACTCAATTTTAGTTGAACTAGTAGGAACCAACATATTTTTCTTAGAGATGTTACTGTACTGATGGCTGGAAATGATATTGTTGATTACATTTTTTTTTTTAATTTTATTTGAACTAGTAGGAATCTAATGAATACATGGAATGGTATTCTGAGCACTTATTGATGCTAGTCAATGCATGCAGTTGAATGCCATACTAATGATGTTTCGGTGATCACTGCATCTCGTCAAGGGTCTCCTGACCAAATACAGTTGGAGTCTTCAGTAGTTAATGCGGTAAGCCTCCAAATTTATCAATTGATTTATGTCTATAGCATTGCAGCCATTCATTATGAATATGAAGGTTTGAAACATGGGCTGTGGTTCATGTTTCTTGTTTTCCTGAAGATGGCATTTGGTGAGCTGTGTCAAAGTATGAGAACTTTATTTATATTTGATCTTTTAGCACGTGGCTTTACTTGCAAATATTAAACTATCTTTTAGGTTAGCGATGGCCAACCTTCAGATATTTTGAGACCTCACGGCCGAGCAGTTAGTGTGGGTTCCAACTCTATGAAAACGCCCAAGTCTCCATGGATGCCTTTCTCCATGTTGTTTGCTGCTATCTCTAATAAAGTTTCTTCCAAAGACATGGAATCTATTAGTGTGCAATACGAACAATTCAGGGTAATTTGAAATTCGAATTTTATGTCATACTTCGTTTTCTCTCTTTTCATGTTATTTATCTTGATGCTGTTTTCTAGGCCAAGAAGATGAATCGTGATGATTTTGTAAGACAGCTGAGACTGATAGTTGGAGATTCTTTGTTGAGGTCTACAATAACAAGTCTTTCCAAGGTCATCTTCTGCTGCTTCTTTTTTTCCTATAAAAAAAATTCTTTGATTCTCTATTTCCAAATTCATTCTATTTTTGGTACTTTGACCTCTATACATGAAATTTCAACATCTCTCTTTTGGGACATGAAACAAACTTTTCATTGTCAGATGAGAAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGGATGTAAACACCCAAGAGGAGTGAAGATAACGAGCAACCAAACCAAAAAGGGAAAACCGCCAATAAGGAACAAAACACCCTAGGGAGAAACAAGCTGACTAAAATGGCAAGAAGGCAAGACCGCCAAACCAAAGTGACATTGAATCTAAAACCGCCTAATGTTTCTCTTTGACCTCTATACATGAAAATTCAATATCTCTCCTTCATGTCACTGAATCAAATTACTCCCATTTTGACATGGATTGAATTACTTCCATTTCTAAGGGTAAAAAATAAATCACAATCTTTTGCGATTGCATTAGTAATTTGTTACCTTTAAACCCCTAGTTTTAGACAAGATGCCCAAAAATTGGGAACATGCTAGCTAGTTAATGATCATTGATTTTAGAATTGAAGTACAACCAAGTAAAAATTAAATGCATTTTTGGAGCTTATAATCCTGTTGTCAGTTATCAATGTAAATCCACCCCACCCCACCCCACGTGGAAATAAACCATACAAGAGTGGCAAAGACATGGTCGTATTTATTAAAATGTCTATTAAAAATTTAATACATTTTTACTTTTAAAGGTTTTTAATTGTAAATTGTATCATTCACATTTAAGAAATACTATAAAGAACAAAAAAAATTGCCGTACCAGTACCTATGAAAAGTTGAAAAGGCCAATGACATGCTTCTAATGACGCAACGTTTTGTTACAAAAGCTTGTAAGAAAAGTGAACCGAGCATAGCTCAAGATTAAGACATTATATCTTCGACAGTTATAGATGTTTGAATCCTCACCCTGCATGTTTTTGAACTCGTGAAATAGGAAAGGCTTATAAGAAAGAGGAAAGTATGACGAACAATTTCCAATGATACAATGTGTGTATCATAAGAATATTCAAAACAAATAGTGCCACATTGAATTATATAAATCACTTATTTGGACATCAAGCTTTTCACTTTCACCACTGGAGCATAATTGCAAAACGTCATCCAGAAATAGTTGGTAGAGTTCACCAATGTAGGAAATAGATGTTTTGTTTATTGTAAAGTCTAATATGCATCACTTTAAGTACAGCTAAGTTTGTAGACATGAGATGAGATAACTGATTTGTCTTTGCATGTTTACTCTATATATCTTTATTTATTTATTTATTACAAATTGATGCAACTTTTTAACAGTGGTGTCTATCCAGTCTCCAACCTTTAAGAAATCTCATTTACATTCTTTAACAGTGGTATCTATCCAGTCAGTTCTTACCATCAACATCATTATTCAAGTATTTATGTGGCACATTTCTCGGATTAACGAGTGATGATTTAGCTTGATGTAGTAACTAGGTGGCACAATTTAGCTAATGGGATAAATTAGGGCATATGAGCTAAAAAAATGATGATATGGGTAGATAAAATATATTTTTTTGGTTGCATGCTCTTAGTTTATCCAACTAACTTGCTTTTTGTGCAATCATCTGTAACAGCCCAACCTCACCCCTCACCGATAGCCGATCTTGTTATCTTTGGGTTTTCCCTCAAGTTTTTTTAAATACATTTGCTAGGGAGAAATTTCAACGCCCTTATAAAGAATGCCTCATTCCTCTCTCCAACCGAGGTAGGATCTCACAATCCACCCCCTTTCGAGGTCTATCGTTTTTGCTGGCACTTGTTCCCTTTCTCTAATCGATGTGGGACCCCCCAATCCATCCCCCTTGGGGCTCAACGTCCTTGTTGGCACACTGTCTAGTGTCCATCCCCCTTTGGGGCTCAGCCTCCTCGCTGACACATTGCCTGGTGTCTAGCTTTAATATCATCTGTAACAACCTAAGCTCACCGCTATCATATATTGTCCTCTTTGGGCTTCCCTTTTCGGGCTTCTCCTCAAGGTTTTTAAAATGTTTTGCTAGCGGGAGGTTTCCATACCCATATAAAGAATGTTTCGTTCTCTATTCCAACCGAAGTAGGATCTCACATTGGTTTGATTAATTTGATTATTGTGTTTGATAAAATCACGAAGTTTGAGAGATTTCATTTGTAATTCTTTTTTAAAAAATTCTATTGCATTTGGCCTTTCCTTTGAAAAATTGAATTATATTGTCCGAGGAATCTGTTTTAGTTGGGATGTCCAATGTTTTTCTACTTTTTTGCAGGTGCCACCGAAATCATCCAGTCCATAACGCTTGGATTTGACCCAATGTGGACAGAAAGTGCTTTTAATGGTAATAGTTATATGATGCTTTTGGTTAGTATGCGTCGACATAAAATTGTGAATATGCTCATCATCTCTCTGGAACTGATGTTCATAAATGTGCGTTGTAAAAGCTTATTTTGCTAGTGATTTGACATCAAAAAGGCATTATTTTTTCGATCGTCGGGCTTTTCTGTTTTGAGCTCTTGCAATTTACGTTGTCGTGTGTTTATTTCTTTGAATATGATGTTTCTAAGTTTTCACTTCTATGCACAAGGATTTTGGTTATTGATTATTGAATGTTAGTATGGATCAGGTTATTAGGAAGTTGTCGGGAATGAGACGAGCAAAATGTACTTGTGACCTCATCATATTGTAATGAAAGTTATTGAAGTTTGTATTGAAATCTCGTAATCTTTCTATCTCATAGTAGTCGTTCATGTACGCTTTTTTCCCTTCTTCATTTTAGGGTTTGTTTTTAATATCTGAACAAAACAACTAACGGTTA

mRNA sequence

TTTTTATTTTCTTTTTTTCTTTTTTCTTTTTTTTTTTTCCTTGCTTGTTCTTCGTTCCTTGACCTTCTTTTCTTTTCTTTTCTTTTACTGCAAATTGAAACCCAGCGGATGGTTATGTTATTTTGTGTTACATGTGAAATTAATGGGTTTTCCAAGATACATGGATTTCTTCATAAGTCCAGTTAATGTATAGGGTGTTCTCCGGATTTGTGACACATTTTTTGGTTTGAAGTTGGGTTTAGATATTAGTGTAGGTAGTAAAAATGAAAGACAGGATCGCAAAGGTATTGGGTAGCCAGAGAGTTGCACTTGCTTTAAAAAGAAAGCGAGCAGAACAGTTTGGTGCATATTCAGCAGAACCAGTCTGCATGGAGCACCAGTGGCCTACCTTGACTTCATTAAGTAGGGTGGGAAAGAGACGGAAGCTAGGTGGATGTAGCAGCAGATTTGCAAACTCTGAAACTCGTTTTAAACCCTTGTACAGAGGTTATTCAAATTTTATGAAAAGTGGGATACCAAAACACATAATGTTTTATGAGAATGGTGAGTGGATTAAATTTCCCCGTGATCTTCTTGATTTGGTTGTGGAAGATATGCAGGTGAAGAAAGCATCTTTGGAAATTAAGTTTAACGGACAGCACTGTGTTCTAGACTTTTTGCATATGTTTTTTTTGGACTTAAATACGGGGTTGCAACAACCTCTTGCATGGATTGATGCAGCAGGGAGATGCTTCTTTCCTGAGATTTATTGTGCAGATACAAATGAATGCTGCCATTCCAATAATTTTGAAAATAAAGAACCACAGGTTGAAGAAACTCATGGGTCTAATGTAATCAAGTTGCAGTTGGAAATTGAAATAGGTGGAGTTGACCGATCGAGTTTGAAGGTGTGTAGTGGGGAGTCAAATGATTATGTCAAGCCGTCTGGACCTGACCAAGAACTTGCTTATGACCGTGATATGGAAGAAGTTGGGGATAGTTGTGGTAGAATACCTATTGGAAAAACATATGGCGTTGTACCAGAACTTAAAGAATTGGATGTAAACCTCATCTCTGGGACTCAATATGTGAACGGAGGATTGGATACCAGAACCGTGGAGAAAATATTTCGTGATGGAATGATGAGCTCTGATGGTAGTGTAGAGATACTTAATATAAAACACTGCATTGACGCTTCAATGCAATCTCAATTAGAGCTTTTCAATAAGCAAATAGAAATTATCAAAGTGTACAGAGGGGATGCAAATGTTCGTTATGCTTGGCTTCCTGTTTCTAAAACAGAAGTATCTAGCTTGATGATGCATGGAATTGGGCATTGTGGGGTTTCTTCAATCAGATCCATATATGGCACTGGTGTTCACCTCACAGCGGTCAATTGCTCAAATGTCAGTGCAAGTCATTGCGATATTGATGACAATGGAGTGCAGCATCTAGTATTTTGCCGTGTAATATTGGGAAACTTGGAACTTCTTCACCCTGGAAGCAGACAATTCCATCCAAGTAGCAAGGATTTTGACTGTGGAGTGGACAACCTTAAAGAACCAACATATTACGTTGTATGGAGAATGAATATGTGTACTCACATCTATCCAGAATCTGTTGTCAGCTTTAAGGTTGCTCCCAGTCCCAAAGTTGAATGCCATACTAATGATGTTTCGGTGATCACTGCATCTCGTCAAGGGTCTCCTGACCAAATACAGTTGGAGTCTTCAGTAGTTAATGCGGTTAGCGATGGCCAACCTTCAGATATTTTGAGACCTCACGGCCGAGCAGTTAGTGTGGGTTCCAACTCTATGAAAACGCCCAAGTCTCCATGGATGCCTTTCTCCATGTTGTTTGCTGCTATCTCTAATAAAGTTTCTTCCAAAGACATGGAATCTATTAGTGTGCAATACGAACAATTCAGGGCCAAGAAGATGAATCGTGATGATTTTGTAAGACAGCTGAGACTGATAGTTGGAGATTCTTTGTTGAGGTCTACAATAACAAGTCTTTCCAAGGTGCCACCGAAATCATCCAGTCCATAACGCTTGGATTTGACCCAATGTGGACAGAAAGTGCTTTTAATGGTAATAGTTATATGATGCTTTTGGTTAGTATGCGTCGACATAAAATTGTGAATATGCTCATCATCTCTCTGGAACTGATGTTCATAAATGTGCGTTGTAAAAGCTTATTTTGCTAGTGATTTGACATCAAAAAGGCATTATTTTTTCGATCGTCGGGCTTTTCTGTTTTGAGCTCTTGCAATTTACGTTGTCGTGTGTTTATTTCTTTGAATATGATGTTTCTAAGTTTTCACTTCTATGCACAAGGATTTTGGTTATTGATTATTGAATGTTAGTATGGATCAGGTTATTAGGAAGTTGTCGGGAATGAGACGAGCAAAATGTACTTGTGACCTCATCATATTGTAATGAAAGTTATTGAAGTTTGTATTGAAATCTCGTAATCTTTCTATCTCATAGTAGTCGTTCATGTACGCTTTTTTCCCTTCTTCATTTTAGGGTTTGTTTTTAATATCTGAACAAAACAACTAACGGTTA

Coding sequence (CDS)

ATGAAAGACAGGATCGCAAAGGTATTGGGTAGCCAGAGAGTTGCACTTGCTTTAAAAAGAAAGCGAGCAGAACAGTTTGGTGCATATTCAGCAGAACCAGTCTGCATGGAGCACCAGTGGCCTACCTTGACTTCATTAAGTAGGGTGGGAAAGAGACGGAAGCTAGGTGGATGTAGCAGCAGATTTGCAAACTCTGAAACTCGTTTTAAACCCTTGTACAGAGGTTATTCAAATTTTATGAAAAGTGGGATACCAAAACACATAATGTTTTATGAGAATGGTGAGTGGATTAAATTTCCCCGTGATCTTCTTGATTTGGTTGTGGAAGATATGCAGGTGAAGAAAGCATCTTTGGAAATTAAGTTTAACGGACAGCACTGTGTTCTAGACTTTTTGCATATGTTTTTTTTGGACTTAAATACGGGGTTGCAACAACCTCTTGCATGGATTGATGCAGCAGGGAGATGCTTCTTTCCTGAGATTTATTGTGCAGATACAAATGAATGCTGCCATTCCAATAATTTTGAAAATAAAGAACCACAGGTTGAAGAAACTCATGGGTCTAATGTAATCAAGTTGCAGTTGGAAATTGAAATAGGTGGAGTTGACCGATCGAGTTTGAAGGTGTGTAGTGGGGAGTCAAATGATTATGTCAAGCCGTCTGGACCTGACCAAGAACTTGCTTATGACCGTGATATGGAAGAAGTTGGGGATAGTTGTGGTAGAATACCTATTGGAAAAACATATGGCGTTGTACCAGAACTTAAAGAATTGGATGTAAACCTCATCTCTGGGACTCAATATGTGAACGGAGGATTGGATACCAGAACCGTGGAGAAAATATTTCGTGATGGAATGATGAGCTCTGATGGTAGTGTAGAGATACTTAATATAAAACACTGCATTGACGCTTCAATGCAATCTCAATTAGAGCTTTTCAATAAGCAAATAGAAATTATCAAAGTGTACAGAGGGGATGCAAATGTTCGTTATGCTTGGCTTCCTGTTTCTAAAACAGAAGTATCTAGCTTGATGATGCATGGAATTGGGCATTGTGGGGTTTCTTCAATCAGATCCATATATGGCACTGGTGTTCACCTCACAGCGGTCAATTGCTCAAATGTCAGTGCAAGTCATTGCGATATTGATGACAATGGAGTGCAGCATCTAGTATTTTGCCGTGTAATATTGGGAAACTTGGAACTTCTTCACCCTGGAAGCAGACAATTCCATCCAAGTAGCAAGGATTTTGACTGTGGAGTGGACAACCTTAAAGAACCAACATATTACGTTGTATGGAGAATGAATATGTGTACTCACATCTATCCAGAATCTGTTGTCAGCTTTAAGGTTGCTCCCAGTCCCAAAGTTGAATGCCATACTAATGATGTTTCGGTGATCACTGCATCTCGTCAAGGGTCTCCTGACCAAATACAGTTGGAGTCTTCAGTAGTTAATGCGGTTAGCGATGGCCAACCTTCAGATATTTTGAGACCTCACGGCCGAGCAGTTAGTGTGGGTTCCAACTCTATGAAAACGCCCAAGTCTCCATGGATGCCTTTCTCCATGTTGTTTGCTGCTATCTCTAATAAAGTTTCTTCCAAAGACATGGAATCTATTAGTGTGCAATACGAACAATTCAGGGCCAAGAAGATGAATCGTGATGATTTTGTAAGACAGCTGAGACTGATAGTTGGAGATTCTTTGTTGAGGTCTACAATAACAAGTCTTTCCAAGGTGCCACCGAAATCATCCAGTCCATAA

Protein sequence

MKDRIAKVLGSQRVALALKRKRAEQFGAYSAEPVCMEHQWPTLTSLSRVGKRRKLGGCSSRFANSETRFKPLYRGYSNFMKSGIPKHIMFYENGEWIKFPRDLLDLVVEDMQVKKASLEIKFNGQHCVLDFLHMFFLDLNTGLQQPLAWIDAAGRCFFPEIYCADTNECCHSNNFENKEPQVEETHGSNVIKLQLEIEIGGVDRSSLKVCSGESNDYVKPSGPDQELAYDRDMEEVGDSCGRIPIGKTYGVVPELKELDVNLISGTQYVNGGLDTRTVEKIFRDGMMSSDGSVEILNIKHCIDASMQSQLELFNKQIEIIKVYRGDANVRYAWLPVSKTEVSSLMMHGIGHCGVSSIRSIYGTGVHLTAVNCSNVSASHCDIDDNGVQHLVFCRVILGNLELLHPGSRQFHPSSKDFDCGVDNLKEPTYYVVWRMNMCTHIYPESVVSFKVAPSPKVECHTNDVSVITASRQGSPDQIQLESSVVNAVSDGQPSDILRPHGRAVSVGSNSMKTPKSPWMPFSMLFAAISNKVSSKDMESISVQYEQFRAKKMNRDDFVRQLRLIVGDSLLRSTITSLSKVPPKSSSP

Homology

[Close]

BLAST of CmaCh16G011880 vs. ExPASy Swiss-Prot
Match: Q8RY59 (Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana OX=3702 GN=RCD1 PE=1 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 2.1e-111
Identity = 246/597 (41.21%), Postives = 341/597 (57.12%), Query Frame = 0


Query: 1   MKDRIAKVLGSQRV--ALALKRKRAEQFGAYSAEPVC--MEHQWPTLTSLSRVGKRRKLG 60
           M+ +I KVL S R       KRKRA  + AY     C  +++  P         KRR+L 
Sbjct: 1   MEAKIVKVLDSSRCEDGFGKKRKRAASYAAYVTGVSCAKLQNVPPPNGQCQIPDKRRRLE 60

Query: 61  GCSSRFANSETRFKPLYRGYSNFMKSGIPKHIMFYENGEWIKFPRDLLDLVVEDMQVKKA 120
           G +   A      K L R Y+ F K+GI K +M YENGEW   P  ++  +  +++ K A
Sbjct: 61  GENKLSAYENRSGKALVRYYTYFKKTGIAKRVMMYENGEWNDLPEHVICAIQNELEEKSA 120

Query: 121 SLEIKFNGQHCVLDFLHMFFLDLNTGLQQPLAWIDAAGRCFFPEIYCAD--TNECCHSNN 180
           ++E K  G   +LDFLHM  LD+ TG + PLAWID AG+CFFPEIY +D  TN C H   
Sbjct: 121 AIEFKLCGHSFILDFLHMQRLDMETGAKTPLAWIDNAGKCFFPEIYESDERTNYCHHKC- 180

Query: 181 FENKEPQVEETHGSNVIKLQLEIEIGG--VDRSSLKVCSGESNDYVKPSGP-DQELAYDR 240
              ++P+    H    IKL+LEI++ G    R +L+ CS ES D +    P  Q  + + 
Sbjct: 181 --VEDPKQNAPHD---IKLRLEIDVNGGETPRLNLEECSDESGDNMMDDVPLAQRSSNEH 240

Query: 241 DMEEVGDSCGRIPIGKTYGVVPELKELDVNLISGTQYVNGG-LDTRTVEKIFRDGMMSSD 300
             E   DSC R    K    V +  E D  ++SG +      LD   V+K+F  G  +S 
Sbjct: 241 YDEATEDSCSR----KLEAAVSKWDETDAIVVSGAKLTGSEVLDKDAVKKMFAVG-TASL 300

Query: 301 GSVEILNIKHCIDASMQSQLELFNKQIEIIKVYRGDANVRYAWLPVSKTEVSSLMMHGIG 360
           G V +L++        +++L LF KQ+EI K +RGDANVRYAWLP  +  +S++MM G+G
Sbjct: 301 GHVPVLDVGRFSSEIAEARLALFQKQVEITKKHRGDANVRYAWLPAKREVLSAVMMQGLG 360

Query: 361 HCGVSSIRSIYGTGVHLTAVNCSNVSASHCDIDDNGVQHLVFCRVILGNLELLHPGSRQF 420
             G    +SIYG G+HLTA +C   SA +CD+D+NGV+++V CRVI+GN+ELL     QF
Sbjct: 361 VGGAFIRKSIYGVGIHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNMELLRGDKAQF 420

Query: 421 HPSSKDFDCGVDNLKEPTYYVVWRMNMCTHIYPESVVSFKVAPSPKVECHTNDVSVITAS 480
               +++D GVD+++ P  Y+VW +NM THI+PE VV FK++  P  E +      + A 
Sbjct: 421 FSGGEEYDNGVDDIESPKNYIVWNINMNTHIFPEFVVRFKLSNLPNAEGN------LIAK 480

Query: 481 RQGSPDQIQLESSVVNAVSDGQPSDILRPHGRAVSVGSNSMKTPKSPWMPFSMLFAAISN 540
           R  S   ++    +   +   Q +   R  G A SVGS++ + PKSPWMPF  LFAAIS+
Sbjct: 481 RDNSGVTLEGPKDLPPQLESNQGA---RGSGSANSVGSSTTR-PKSPWMPFPTLFAAISH 540

Query: 541 KVSSKDMESISVQYEQFRAKKMNRDDFVRQLRLIVGDSLLRSTITSLSKVPPKSSSP 588
           KV+  DM  I+  Y+Q R KKM R +FVR+LR+IVGD LLRSTIT+L   P     P
Sbjct: 541 KVAENDMLLINADYQQLRDKKMTRAEFVRKLRVIVGDDLLRSTITTLQNQPKSKEIP 576

[Close]

BLAST of CmaCh16G011880 vs. ExPASy Swiss-Prot
Match: O82289 (Probable inactive poly [ADP-ribose] polymerase SRO1 OS=Arabidopsis thaliana OX=3702 GN=SRO1 PE=1 SV=2)

HSP 1 Score: 364.8 bits (935), Expect = 1.9e-99
Identity = 222/592 (37.50%), Postives = 333/592 (56.25%), Query Frame = 0


Query: 1   MKDRIAKVL-GSQRVALALKRKRAEQFGAYSAEPVCMEHQW--PTLTSLSRVGKRRKLGG 60
           M+ +I KV   S +  L  KRK    +  Y +     + QW     +S  ++ KRR L G
Sbjct: 1   MEAKIVKVSDSSYKDGLGKKRKHPGNYTPYDSGRSYAKLQWVLSPNSSTQKLEKRRNLDG 60

Query: 61  CSSRFANSETRFKPLYRGYSNFMKSGIPKHIMFYENGEWIKFPRDLLDLVVEDMQVKKAS 120
            +    +     K L R +S + K+G+PK +MF+ENGEWI  P  +L  +  D++ K+A+
Sbjct: 61  ENKVIVSENHVEKSLVRYFSYYKKTGVPKRVMFHENGEWIDLPDHILCDIRNDLEAKRAT 120

Query: 121 LEIKFNGQHCVLDFLHMFFLDLNTGLQQPLAWIDAAGRCFFPEIYCADTNECCHSNNFEN 180
           +E  + G+H +LDFLHM+ LDL TG++  LAWID AG+CFFPE +     + CH  +   
Sbjct: 121 IEFNWCGRHFLLDFLHMYRLDLETGVKTQLAWIDIAGKCFFPETFDTLERDGCH--HIRG 180

Query: 181 KEPQVEETHGSNVIKLQLEIEI--GGVDRSSLKVCSGESNDYVKPSGPDQELAYDRDMEE 240
           ++P   E H    IKL +EI++  G + R +L V + ES D +      Q  +   + E 
Sbjct: 181 EDP---EQHDQREIKLHIEIDVNSGELPRLNLNVVTDESGDNMDDFQAVQRSSNGPNDEA 240

Query: 241 VGDSCGRIPIGKTYGVVPELKELDVNLISGTQYVNGGLDTRTVEKIFRDGMMSSDGSVEI 300
             DSC R    +    V +  + + +  SG +     LD   V+++F  G  ++ G VE 
Sbjct: 241 SEDSCSR----ELDDAVEKWDKTETDRFSGVKPAEEELDKDAVKQMFALG-AATLGHVES 300

Query: 301 LNIKHCIDASMQSQLELFNKQIEIIKVYRGDANVRYAWLPVSKTEVSSLMMHGIGHCGVS 360
           L++        +++L LF KQ +I K +RGDAN+RYAW+P  K  +S++MMHG+G  G  
Sbjct: 301 LDVYQFSSEIAKARLSLFQKQADITKKHRGDANIRYAWVPAKKEVLSAVMMHGLGVGGAF 360

Query: 361 SIRSIYGTGVHLTAVNCSNVSASHCDIDDNGVQHLVFCRVILGNLELLHPGSRQFHPSSK 420
             +S+YG GVH  A NC   SA +CDIDDNGV+H+V CRVI+GN+E L   + Q+    +
Sbjct: 361 IKKSMYGVGVH--AANCPYFSARYCDIDDNGVRHMVLCRVIMGNMEPLRGDNTQYFTGGE 420

Query: 421 DFDCGVDNLKEPTYYVVWRMNMCTHIYPESVVSFKVA-PS------PKVECHTNDVSVIT 480
           ++D GVD+++ P +Y++W MNM THIYPE VVSFK++ P+      P  +       +  
Sbjct: 421 EYDNGVDDVESPKHYLIWNMNMNTHIYPEFVVSFKLSIPNAEGNILPTTQSRHESSGLTL 480

Query: 481 ASRQGSPDQIQLESSVVNAVSDGQPSDILRPHGRAVSVGSNSMKTPKSPWMPFSMLFAAI 540
              +GSP      S+    VS+G         G      S+S + P+SP MPF +LF AI
Sbjct: 481 EGPKGSP------SNEPGRVSNG---------GSGSEKNSSSSRRPRSPIMPFPLLFKAI 540

Query: 541 SNKVSSKDMESISVQYEQFRAKKMNRDDFVRQLRLIVG-DSLLRSTITSLSK 580
           S+K++ KDM+ I   Y++ R KK++R +F + L +IVG D LL STIT L +
Sbjct: 541 SSKIARKDMDLIIAGYQELREKKVSRKEFYKTLSMIVGDDDLLISTITGLQR 565

[Close]

BLAST of CmaCh16G011880 vs. ExPASy Swiss-Prot
Match: Q9ZUD9 (Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis thaliana OX=3702 GN=SRO2 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-30
Identity = 86/296 (29.05%), Postives = 145/296 (48.99%), Query Frame = 0


Query: 285 GMMSSDGSVEILNIKHCIDASMQSQLELFNKQI---EIIKVYRGDANVRYAWLPVSKTEV 344
           G++SSD ++  ++ K+  +  + ++ +    +I    + + + GDANV+Y W   S+ E+
Sbjct: 67  GVVSSDTTIVTIS-KNSSERGITTRAKFLAFRIFTDAVARKHGGDANVKYGWYAGSRDEI 126

Query: 345 SSLMMHGIGHCGVSSIRS---IYGTGVHLTAVNCSNVSASHCDIDDNGVQHLVFCRVILG 404
             ++ +G  +  V    +    +G G+HL    CS ++AS  + D+ G+++L+ CRVILG
Sbjct: 127 QRIISYGFSNRDVGKFENDGGSHGIGIHLVPSKCSLLAASATEQDEEGLRYLLLCRVILG 186

Query: 405 NLELLHPGSRQFHPSSKDFDCGVDNLKEPTYYVVWRMNMCTHIYPESVVSFKVAPSPKVE 464
             E++  GS+Q +PSS +FD GVD+L  P  YV+W  NM + I P  +VSF+   SP+  
Sbjct: 187 KPEIIISGSKQSYPSSAEFDSGVDDLHNPRNYVIWSCNMNSCILPSYIVSFR---SPR-- 246

Query: 465 CHTNDVSVITASRQGSPDQIQLESSVVNAVSDGQPSDILRPHGRAVSVGSNSMKTPKSPW 524
                   +  SR G   +                                    P SPW
Sbjct: 247 --------LRVSRGGFASR------------------------------------PSSPW 306

Query: 525 MPFSMLFAAISNKVSSKDMESISVQYEQFRAKKMNRDDFVRQLRLIVGDSLLRSTI 575
           + F+ L + +S  +    M  I   Y+ FR +K+ RD  VR++R + GD+LL   I
Sbjct: 307 VSFASLMSMLSTSMDPSRMNLIIRTYDDFRKRKIRRDQLVRKMREVAGDNLLAEII 312

[Close]

BLAST of CmaCh16G011880 vs. ExPASy Swiss-Prot
Match: O64592 (Probable inactive poly [ADP-ribose] polymerase SRO3 OS=Arabidopsis thaliana OX=3702 GN=SRO3 PE=1 SV=2)

HSP 1 Score: 123.2 bits (308), Expect = 9.5e-27
Identity = 85/301 (28.24%), Postives = 140/301 (46.51%), Query Frame = 0


Query: 278 VEKIFRDGMMSSDGSVEILNIKHCIDASM---QSQLELFNKQIEIIK-VYRGDANVRYAW 337
           ++  F  GM S      I+ ++  +   +   +++  +F    E +K    G AN+RY W
Sbjct: 50  IKNCFLSGMGSFATETTIVTVRKILTQRLITTKAKFAVFKLFTEAMKRKNNGYANIRYGW 109

Query: 338 LPVSKTEVSSLMMHGIGHCGVSSIRS---IYGTGVHLTAVNCSNVSASHCDIDDNGVQHL 397
              SK E+  ++ +G  +  +  + +    +G G+HL     S  +A   + D+ G++++
Sbjct: 110 YSGSKEEIDRVITYGFSNREIKKVENDVGSHGVGIHLVHHRYSLAAALVGEGDEEGIKNI 169

Query: 398 VFCRVILGNLELLHPGSRQFHPSSKDFDCGVDNLKEPTYYVVWRMNMCTHIYPESVVSFK 457
           + CRVILG  E +  GS+Q +PSS  FD GVDNL+ P  YV+W  NM ++I P  +VSFK
Sbjct: 170 LLCRVILGKPEQIVTGSKQSYPSSNQFDSGVDNLENPRKYVIWSCNMNSYILPTYIVSFK 229

Query: 458 VAPSPKVECHTNDVSVITASRQGSPDQIQLESSVVNAVSDGQPSDILRP-HGRAVSVGSN 517
                                                      S +LR   GRA      
Sbjct: 230 -------------------------------------------SHLLRGLIGRA------ 289

Query: 518 SMKTPKSPWMPFSMLFAAISNKVSSKDMESISVQYEQFRAKKMNRDDFVRQLRLIVGDSL 571
                +SP + FS+L + +S  + +  M  I   Y+ FR +K+ R+  VR++R +VGD+L
Sbjct: 290 -----RSPCVSFSVLMSILSKSLDAARMNLILTSYDDFRKRKLRREQLVRKIREVVGDNL 296

[Close]

BLAST of CmaCh16G011880 vs. ExPASy Swiss-Prot
Match: Q9FJJ3 (Probable inactive poly [ADP-ribose] polymerase SRO5 OS=Arabidopsis thaliana OX=3702 GN=SRO5 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-18
Identity = 70/266 (26.32%), Postives = 119/266 (44.74%), Query Frame = 0


Query: 311 ELFNKQIEIIKVYRGDANVRYAWLPVSKTEVSSLMMHGIGHCGVSSIRS--IYGTGVHLT 370
           ++F + +++     G A V+Y W  VSK E+ ++  +G        +R+   +G G++L+
Sbjct: 90  QVFQEAVQMKHGGDGGAKVKYGWCSVSKHELKTIFEYGFS----EPLRNDGSFGRGLYLS 149

Query: 371 AVN----CSNVSASHCDIDDNGVQHLVFCRVILGNLELLHPGSRQFHPSSKDFDCGVDNL 430
             N    C   SAS     ++G++ L+ CRV+LG  E++  GS +  PSS +FD GVD+L
Sbjct: 150 PDNSPLDCLKDSASE---SEDGMRFLLLCRVLLGKSEIVPQGSTRSCPSSPEFDSGVDDL 209

Query: 431 KEPTYYVVWRMNMCTHIYPESVVSFKVAPSPKVECHTNDVSVITASRQGSPDQIQLESSV 490
                Y+VW  +M TH+ PE +V  K                                  
Sbjct: 210 VSTKKYIVWSTHMNTHVLPEFLVCIKA--------------------------------- 269

Query: 491 VNAVSDGQPSDILRPHGRAVSVGSNSMKTPKSPWMPFSMLFAAISNKVSSKDMESISVQY 550
                   P ++ R           S K  +SPWM F +L  A+S  +    +  I   Y
Sbjct: 270 --------PFNLTR-----------SPKRLRSPWMAFPVLIKALSKFLPPSQILVIQKHY 296

Query: 551 EQFRAKKMNRDDFVRQLRLIVGDSLL 571
           +  + +++ R + ++++R I GD LL
Sbjct: 330 KDQQNRRITRSELIQRVRSITGDKLL 296

[Close]

BLAST of CmaCh16G011880 vs. TAIR 10
Match: AT1G32230.1 (WWE protein-protein interaction domain protein family )

HSP 1 Score: 404.4 bits (1038), Expect = 1.5e-112
Identity = 246/597 (41.21%), Postives = 341/597 (57.12%), Query Frame = 0


Query: 1   MKDRIAKVLGSQRV--ALALKRKRAEQFGAYSAEPVC--MEHQWPTLTSLSRVGKRRKLG 60
           M+ +I KVL S R       KRKRA  + AY     C  +++  P         KRR+L 
Sbjct: 1   MEAKIVKVLDSSRCEDGFGKKRKRAASYAAYVTGVSCAKLQNVPPPNGQCQIPDKRRRLE 60

Query: 61  GCSSRFANSETRFKPLYRGYSNFMKSGIPKHIMFYENGEWIKFPRDLLDLVVEDMQVKKA 120
           G +   A      K L R Y+ F K+GI K +M YENGEW   P  ++  +  +++ K A
Sbjct: 61  GENKLSAYENRSGKALVRYYTYFKKTGIAKRVMMYENGEWNDLPEHVICAIQNELEEKSA 120

Query: 121 SLEIKFNGQHCVLDFLHMFFLDLNTGLQQPLAWIDAAGRCFFPEIYCAD--TNECCHSNN 180
           ++E K  G   +LDFLHM  LD+ TG + PLAWID AG+CFFPEIY +D  TN C H   
Sbjct: 121 AIEFKLCGHSFILDFLHMQRLDMETGAKTPLAWIDNAGKCFFPEIYESDERTNYCHHKC- 180

Query: 181 FENKEPQVEETHGSNVIKLQLEIEIGG--VDRSSLKVCSGESNDYVKPSGP-DQELAYDR 240
              ++P+    H    IKL+LEI++ G    R +L+ CS ES D +    P  Q  + + 
Sbjct: 181 --VEDPKQNAPHD---IKLRLEIDVNGGETPRLNLEECSDESGDNMMDDVPLAQRSSNEH 240

Query: 241 DMEEVGDSCGRIPIGKTYGVVPELKELDVNLISGTQYVNGG-LDTRTVEKIFRDGMMSSD 300
             E   DSC R    K    V +  E D  ++SG +      LD   V+K+F  G  +S 
Sbjct: 241 YDEATEDSCSR----KLEAAVSKWDETDAIVVSGAKLTGSEVLDKDAVKKMFAVG-TASL 300

Query: 301 GSVEILNIKHCIDASMQSQLELFNKQIEIIKVYRGDANVRYAWLPVSKTEVSSLMMHGIG 360
           G V +L++        +++L LF KQ+EI K +RGDANVRYAWLP  +  +S++MM G+G
Sbjct: 301 GHVPVLDVGRFSSEIAEARLALFQKQVEITKKHRGDANVRYAWLPAKREVLSAVMMQGLG 360

Query: 361 HCGVSSIRSIYGTGVHLTAVNCSNVSASHCDIDDNGVQHLVFCRVILGNLELLHPGSRQF 420
             G    +SIYG G+HLTA +C   SA +CD+D+NGV+++V CRVI+GN+ELL     QF
Sbjct: 361 VGGAFIRKSIYGVGIHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNMELLRGDKAQF 420

Query: 421 HPSSKDFDCGVDNLKEPTYYVVWRMNMCTHIYPESVVSFKVAPSPKVECHTNDVSVITAS 480
               +++D GVD+++ P  Y+VW +NM THI+PE VV FK++  P  E +      + A 
Sbjct: 421 FSGGEEYDNGVDDIESPKNYIVWNINMNTHIFPEFVVRFKLSNLPNAEGN------LIAK 480

Query: 481 RQGSPDQIQLESSVVNAVSDGQPSDILRPHGRAVSVGSNSMKTPKSPWMPFSMLFAAISN 540
           R  S   ++    +   +   Q +   R  G A SVGS++ + PKSPWMPF  LFAAIS+
Sbjct: 481 RDNSGVTLEGPKDLPPQLESNQGA---RGSGSANSVGSSTTR-PKSPWMPFPTLFAAISH 540

Query: 541 KVSSKDMESISVQYEQFRAKKMNRDDFVRQLRLIVGDSLLRSTITSLSKVPPKSSSP 588
           KV+  DM  I+  Y+Q R KKM R +FVR+LR+IVGD LLRSTIT+L   P     P
Sbjct: 541 KVAENDMLLINADYQQLRDKKMTRAEFVRKLRVIVGDDLLRSTITTLQNQPKSKEIP 576

[Close]

BLAST of CmaCh16G011880 vs. TAIR 10
Match: AT1G32230.2 (WWE protein-protein interaction domain protein family )

HSP 1 Score: 402.9 bits (1034), Expect = 4.4e-112
Identity = 246/597 (41.21%), Postives = 341/597 (57.12%), Query Frame = 0


Query: 1   MKDRIAKVLGSQRV--ALALKRKRAEQFGAYSAEPVC--MEHQWPTLTSLSRVGKRRKLG 60
           M+ +I KVL S R       KRKRA  + AY     C  +++  P         KRR+L 
Sbjct: 1   MEAKIVKVLDSSRCEDGFGKKRKRAASYAAYVTGVSCAKLQNVPPPNGQCQIPDKRRRLE 60

Query: 61  GCSSRFANSETRFKPLYRGYSNFMKSGIPKHIMFYENGEWIKFPRDLLDLVVEDMQVKKA 120
           G +   A      K L R Y+ F K+GI K +M YENGEW   P  ++  +  +++ K A
Sbjct: 61  GENKLSAYENRSGKALVRYYTYFKKTGIAKRVMMYENGEWNDLPEHVICAIQNELEEKSA 120

Query: 121 SLEIKFNGQHCVLDFLHMFFLDLNTGLQQPLAWIDAAGRCFFPEIYCAD--TNECCHSNN 180
           ++E K  G   +LDFLHM  LD+ TG + PLAWID AG+CFFPEIY +D  TN C H   
Sbjct: 121 AIEFKLCGHSFILDFLHMQRLDMETGAKTPLAWIDNAGKCFFPEIYESDERTNYCHHKC- 180

Query: 181 FENKEPQVEETHGSNVIKLQLEIEIGG--VDRSSLKVCSGESNDYVKPSGP-DQELAYDR 240
              ++P+    H    IKL+LEI++ G    R +L+ CS ES D +    P  Q  + + 
Sbjct: 181 --VEDPKQNAPHD---IKLRLEIDVNGGETPRLNLEECSDESGDNMMDDVPLAQRSSNEH 240

Query: 241 DMEEVGDSCGRIPIGKTYGVVPELKELDVNLISGTQYVNGG-LDTRTVEKIFRDGMMSSD 300
             E   DSC R    K    V +  E D  ++SG +      LD   V+K+F  G  +S 
Sbjct: 241 YDEATEDSCSR----KLEAAVSKWDETDAIVVSGAKLTGSEVLDKDAVKKMFAVG-TASL 300

Query: 301 GSVEILNIKHCIDASMQSQLELFNKQIEIIKVYRGDANVRYAWLPVSKTEVSSLMMHGIG 360
           G V +L++        +++L LF KQ+EI K +RGDANVRYAWLP  +  +S++MM G+G
Sbjct: 301 GHVPVLDVGRFSSEIAEARLALFQKQVEITKKHRGDANVRYAWLPAKREVLSAVMMQGLG 360

Query: 361 HCGVSSIRSIYGTGVHLTAVNCSNVSASHCDIDDNGVQHLVFCRVILGNLELLHPGSRQF 420
             G    +SIYG G+HLTA +C   SA +CD+D+NGV+++V CRVI+GN+ELL     QF
Sbjct: 361 VGGAFIRKSIYGVGIHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNMELLRGDKAQF 420

Query: 421 HPSSKDFDCGVDNLKEPTYYVVWRMNMCTHIYPESVVSFKVAPSPKVECHTNDVSVITAS 480
               +++D GVD+++ P  Y+VW +NM THI+PE VV FK++  P  E +      + A 
Sbjct: 421 FSGGEEYDNGVDDIESPKNYIVWNINMNTHIFPEFVVRFKLSNLPNAEGN------LIAK 480

Query: 481 RQGSPDQIQLESSVVNAVSDGQPSDILRPHGRAVSVGSNSMKTPKSPWMPFSMLFAAISN 540
           R  S   ++    +   +     S+  R  G A SVGS++ + PKSPWMPF  LFAAIS+
Sbjct: 481 RDNSGVTLEGPKDLPPQLE----SNGARGSGSANSVGSSTTR-PKSPWMPFPTLFAAISH 540

Query: 541 KVSSKDMESISVQYEQFRAKKMNRDDFVRQLRLIVGDSLLRSTITSLSKVPPKSSSP 588
           KV+  DM  I+  Y+Q R KKM R +FVR+LR+IVGD LLRSTIT+L   P     P
Sbjct: 541 KVAENDMLLINADYQQLRDKKMTRAEFVRKLRVIVGDDLLRSTITTLQNQPKSKEIP 575

[Close]

BLAST of CmaCh16G011880 vs. TAIR 10
Match: AT1G32230.3 (WWE protein-protein interaction domain protein family )

HSP 1 Score: 400.6 bits (1028), Expect = 2.2e-111
Identity = 244/587 (41.57%), Postives = 339/587 (57.75%), Query Frame = 0


Query: 1   MKDRIAKVLGSQRV--ALALKRKRAEQFGAYSAEPVC--MEHQWPTLTSLSRVGKRRKLG 60
           M+ +I KVL S R       KRKRA  + AY     C  +++  P         KRR+L 
Sbjct: 1   MEAKIVKVLDSSRCEDGFGKKRKRAASYAAYVTGVSCAKLQNVPPPNGQCQIPDKRRRLE 60

Query: 61  GCSSRFANSETRFKPLYRGYSNFMKSGIPKHIMFYENGEWIKFPRDLLDLVVEDMQVKKA 120
           G +   A      K L R Y+ F K+GI K +M YENGEW   P  ++  +  +++ K A
Sbjct: 61  GENKLSAYENRSGKALVRYYTYFKKTGIAKRVMMYENGEWNDLPEHVICAIQNELEEKSA 120

Query: 121 SLEIKFNGQHCVLDFLHMFFLDLNTGLQQPLAWIDAAGRCFFPEIYCAD--TNECCHSNN 180
           ++E K  G   +LDFLHM  LD+ TG + PLAWID AG+CFFPEIY +D  TN C H   
Sbjct: 121 AIEFKLCGHSFILDFLHMQRLDMETGAKTPLAWIDNAGKCFFPEIYESDERTNYCHHKC- 180

Query: 181 FENKEPQVEETHGSNVIKLQLEIEIGG--VDRSSLKVCSGESNDYVKPSGP-DQELAYDR 240
              ++P+    H    IKL+LEI++ G    R +L+ CS ES D +    P  Q  + + 
Sbjct: 181 --VEDPKQNAPHD---IKLRLEIDVNGGETPRLNLEECSDESGDNMMDDVPLAQRSSNEH 240

Query: 241 DMEEVGDSCGRIPIGKTYGVVPELKELDVNLISGTQYVNGG-LDTRTVEKIFRDGMMSSD 300
             E   DSC R    K    V +  E D  ++SG +      LD   V+K+F  G  +S 
Sbjct: 241 YDEATEDSCSR----KLEAAVSKWDETDAIVVSGAKLTGSEVLDKDAVKKMFAVG-TASL 300

Query: 301 GSVEILNIKHCIDASMQSQLELFNKQIEIIKVYRGDANVRYAWLPVSKTEVSSLMMHGIG 360
           G V +L++        +++L LF KQ+EI K +RGDANVRYAWLP  +  +S++MM G+G
Sbjct: 301 GHVPVLDVGRFSSEIAEARLALFQKQVEITKKHRGDANVRYAWLPAKREVLSAVMMQGLG 360

Query: 361 HCGVSSIRSIYGTGVHLTAVNCSNVSASHCDIDDNGVQHLVFCRVILGNLELLHPGSRQF 420
             G    +SIYG G+HLTA +C   SA +CD+D+NGV+++V CRVI+GN+ELL     QF
Sbjct: 361 VGGAFIRKSIYGVGIHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNMELLRGDKAQF 420

Query: 421 HPSSKDFDCGVDNLKEPTYYVVWRMNMCTHIYPESVVSFKVAPSPKVECHTNDVSVITAS 480
               +++D GVD+++ P  Y+VW +NM THI+PE VV FK++  P  E +      + A 
Sbjct: 421 FSGGEEYDNGVDDIESPKNYIVWNINMNTHIFPEFVVRFKLSNLPNAEGN------LIAK 480

Query: 481 RQGSPDQIQLESSVVNAVSDGQPSDILRPHGRAVSVGSNSMKTPKSPWMPFSMLFAAISN 540
           R  S   ++    +   +     S+  R  G A SVGS++ + PKSPWMPF  LFAAIS+
Sbjct: 481 RDNSGVTLEGPKDLPPQLE----SNGARGSGSANSVGSSTTR-PKSPWMPFPTLFAAISH 540

Query: 541 KVSSKDMESISVQYEQFRAKKMNRDDFVRQLRLIVGDSLLRSTITSL 578
           KV+  DM  I+  Y+Q R KKM R +FVR+LR+IVGD LLRSTIT+L
Sbjct: 541 KVAENDMLLINADYQQLRDKKMTRAEFVRKLRVIVGDDLLRSTITTL 565

[Close]

BLAST of CmaCh16G011880 vs. TAIR 10
Match: AT2G35510.1 (similar to RCD one 1 )

HSP 1 Score: 364.8 bits (935), Expect = 1.3e-100
Identity = 222/592 (37.50%), Postives = 333/592 (56.25%), Query Frame = 0


Query: 1   MKDRIAKVL-GSQRVALALKRKRAEQFGAYSAEPVCMEHQW--PTLTSLSRVGKRRKLGG 60
           M+ +I KV   S +  L  KRK    +  Y +     + QW     +S  ++ KRR L G
Sbjct: 1   MEAKIVKVSDSSYKDGLGKKRKHPGNYTPYDSGRSYAKLQWVLSPNSSTQKLEKRRNLDG 60

Query: 61  CSSRFANSETRFKPLYRGYSNFMKSGIPKHIMFYENGEWIKFPRDLLDLVVEDMQVKKAS 120
            +    +     K L R +S + K+G+PK +MF+ENGEWI  P  +L  +  D++ K+A+
Sbjct: 61  ENKVIVSENHVEKSLVRYFSYYKKTGVPKRVMFHENGEWIDLPDHILCDIRNDLEAKRAT 120

Query: 121 LEIKFNGQHCVLDFLHMFFLDLNTGLQQPLAWIDAAGRCFFPEIYCADTNECCHSNNFEN 180
           +E  + G+H +LDFLHM+ LDL TG++  LAWID AG+CFFPE +     + CH  +   
Sbjct: 121 IEFNWCGRHFLLDFLHMYRLDLETGVKTQLAWIDIAGKCFFPETFDTLERDGCH--HIRG 180

Query: 181 KEPQVEETHGSNVIKLQLEIEI--GGVDRSSLKVCSGESNDYVKPSGPDQELAYDRDMEE 240
           ++P   E H    IKL +EI++  G + R +L V + ES D +      Q  +   + E 
Sbjct: 181 EDP---EQHDQREIKLHIEIDVNSGELPRLNLNVVTDESGDNMDDFQAVQRSSNGPNDEA 240

Query: 241 VGDSCGRIPIGKTYGVVPELKELDVNLISGTQYVNGGLDTRTVEKIFRDGMMSSDGSVEI 300
             DSC R    +    V +  + + +  SG +     LD   V+++F  G  ++ G VE 
Sbjct: 241 SEDSCSR----ELDDAVEKWDKTETDRFSGVKPAEEELDKDAVKQMFALG-AATLGHVES 300

Query: 301 LNIKHCIDASMQSQLELFNKQIEIIKVYRGDANVRYAWLPVSKTEVSSLMMHGIGHCGVS 360
           L++        +++L LF KQ +I K +RGDAN+RYAW+P  K  +S++MMHG+G  G  
Sbjct: 301 LDVYQFSSEIAKARLSLFQKQADITKKHRGDANIRYAWVPAKKEVLSAVMMHGLGVGGAF 360

Query: 361 SIRSIYGTGVHLTAVNCSNVSASHCDIDDNGVQHLVFCRVILGNLELLHPGSRQFHPSSK 420
             +S+YG GVH  A NC   SA +CDIDDNGV+H+V CRVI+GN+E L   + Q+    +
Sbjct: 361 IKKSMYGVGVH--AANCPYFSARYCDIDDNGVRHMVLCRVIMGNMEPLRGDNTQYFTGGE 420

Query: 421 DFDCGVDNLKEPTYYVVWRMNMCTHIYPESVVSFKVA-PS------PKVECHTNDVSVIT 480
           ++D GVD+++ P +Y++W MNM THIYPE VVSFK++ P+      P  +       +  
Sbjct: 421 EYDNGVDDVESPKHYLIWNMNMNTHIYPEFVVSFKLSIPNAEGNILPTTQSRHESSGLTL 480

Query: 481 ASRQGSPDQIQLESSVVNAVSDGQPSDILRPHGRAVSVGSNSMKTPKSPWMPFSMLFAAI 540
              +GSP      S+    VS+G         G      S+S + P+SP MPF +LF AI
Sbjct: 481 EGPKGSP------SNEPGRVSNG---------GSGSEKNSSSSRRPRSPIMPFPLLFKAI 540

Query: 541 SNKVSSKDMESISVQYEQFRAKKMNRDDFVRQLRLIVG-DSLLRSTITSLSK 580
           S+K++ KDM+ I   Y++ R KK++R +F + L +IVG D LL STIT L +
Sbjct: 541 SSKIARKDMDLIIAGYQELREKKVSRKEFYKTLSMIVGDDDLLISTITGLQR 565

[Close]

BLAST of CmaCh16G011880 vs. TAIR 10
Match: AT1G23550.1 (similar to RCD one 2 )

HSP 1 Score: 136.0 bits (341), Expect = 1.0e-31
Identity = 86/296 (29.05%), Postives = 145/296 (48.99%), Query Frame = 0


Query: 285 GMMSSDGSVEILNIKHCIDASMQSQLELFNKQI---EIIKVYRGDANVRYAWLPVSKTEV 344
           G++SSD ++  ++ K+  +  + ++ +    +I    + + + GDANV+Y W   S+ E+
Sbjct: 67  GVVSSDTTIVTIS-KNSSERGITTRAKFLAFRIFTDAVARKHGGDANVKYGWYAGSRDEI 126

Query: 345 SSLMMHGIGHCGVSSIRS---IYGTGVHLTAVNCSNVSASHCDIDDNGVQHLVFCRVILG 404
             ++ +G  +  V    +    +G G+HL    CS ++AS  + D+ G+++L+ CRVILG
Sbjct: 127 QRIISYGFSNRDVGKFENDGGSHGIGIHLVPSKCSLLAASATEQDEEGLRYLLLCRVILG 186

Query: 405 NLELLHPGSRQFHPSSKDFDCGVDNLKEPTYYVVWRMNMCTHIYPESVVSFKVAPSPKVE 464
             E++  GS+Q +PSS +FD GVD+L  P  YV+W  NM + I P  +VSF+   SP+  
Sbjct: 187 KPEIIISGSKQSYPSSAEFDSGVDDLHNPRNYVIWSCNMNSCILPSYIVSFR---SPR-- 246

Query: 465 CHTNDVSVITASRQGSPDQIQLESSVVNAVSDGQPSDILRPHGRAVSVGSNSMKTPKSPW 524
                   +  SR G   +                                    P SPW
Sbjct: 247 --------LRVSRGGFASR------------------------------------PSSPW 306

Query: 525 MPFSMLFAAISNKVSSKDMESISVQYEQFRAKKMNRDDFVRQLRLIVGDSLLRSTI 575
           + F+ L + +S  +    M  I   Y+ FR +K+ RD  VR++R + GD+LL   I
Sbjct: 307 VSFASLMSMLSTSMDPSRMNLIIRTYDDFRKRKIRRDQLVRKMREVAGDNLLAEII 312

The following BLAST results are available for this feature:

BLAST of CmaCh16G011880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RY59	2.1e-111	41.21	Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana OX=3702 GN=RC...	[more]
O82289	1.9e-99	37.50	Probable inactive poly [ADP-ribose] polymerase SRO1 OS=Arabidopsis thaliana OX=3...	[more]
Q9ZUD9	1.4e-30	29.05	Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis thaliana OX=3...	[more]
O64592	9.5e-27	28.24	Probable inactive poly [ADP-ribose] polymerase SRO3 OS=Arabidopsis thaliana OX=3...	[more]
Q9FJJ3	1.2e-18	26.32	Probable inactive poly [ADP-ribose] polymerase SRO5 OS=Arabidopsis thaliana OX=3...	[more]

BLAST of CmaCh16G011880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32230.1	1.5e-112	41.21	WWE protein-protein interaction domain protein family	[more]
AT1G32230.2	4.4e-112	41.21	WWE protein-protein interaction domain protein family	[more]
AT1G32230.3	2.2e-111	41.57	WWE protein-protein interaction domain protein family	[more]
AT2G35510.1	1.3e-100	37.50	similar to RCD one 1	[more]
AT1G23550.1	1.0e-31	29.05	similar to RCD one 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022003	RST domain	PFAM	PF12174	RST	coord: 514..577 e-value: 3.3E-27 score: 94.2
IPR022003	RST domain	PROSITE	PS51879	RST	coord: 512..583 score: 34.210312
None	No IPR available	GENE3D	3.90.228.10		coord: 271..451 e-value: 3.3E-25 score: 91.1
None	No IPR available	PANTHER	PTHR32263:SF5	INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO1-RELATED	coord: 1..578
None	No IPR available	SUPERFAMILY	56399	ADP-ribosylation	coord: 279..452
IPR044964	Inactive poly [ADP-ribose] polymerase RCD1/SRO1-5	PANTHER	PTHR32263	INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED	coord: 1..578
IPR012317	Poly(ADP-ribose) polymerase, catalytic domain	PROSITE	PS51059	PARP_CATALYTIC	coord: 252..475 score: 24.905718

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G011880.1	CmaCh16G011880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003950	NAD+ ADP-ribosyltransferase activity