CmaCh16G011860 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G011860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	CS domain-containing protein
Location	Cma_Chr16: 9065189 .. 9074370 (+)
RNA-Seq Expression	CmaCh16G011860
Synteny	CmaCh16G011860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACTCCGGTCACCATGTGCCGATCGCGCCTCCTGTAAACTCCTTATCCATTTTCCTCATTTTCTTCGCGCGAAGCTCTAATGGCTTCGGCGAGCTTTACCAGCGCTCTGTGTTTCTTTTCCCAAAACACTATAAGAAACCTCGAGGTCTCCTCTCCGATCTTCTATTCTAGCTCCAATGGCGTCGAATTCGCTTCCAATTCCATCGGTCTCACTTCCTGCACCGGCCTCCCTCCTGCAACTTCTCGTCTCAGTTCCCGTTTCACTCGTAACTGCTCCTCCAGCACCGCTCCAGTTCGCACTTTGGATTACGAGGTACTTCTTCTTCTATGATGTTTTTTGTTTAGTTCGTGGAAAAATTGGAACTCTGAATTGTATGTCGCTTCTTTTATATTGTTGAATCTCTTTGTAGTTTAGTCTGTACTAGCTGCGTTCATGATTTTTGGAAGTATTTCTTGGATAACCTTTCGCATTTCCTTCCAAAAGTGGTAAGCATTGTATCTGGACTGATTATTGTTAGAATGTGCTTCTCTTTTCCACTCGTTACTCTAGAACGGTGTATTTGATCAACATTCGTTGAACTAGAGGTTACAGAGCTGAAGTTTTGTATGCAGATGCCTTGTTGAAGCTGTGGTGAAATTTTGGGTGCTGTTTTATGTGTTGTCTTTATAAGACATGTAAGAAGTTTATTAGCAATGAATAATCAATCCATTTGCATTAGTTTAATACACATAATGTTTGAAACAAATTGGTTTATGTATCTCGTAATTACCATAACTCACTAAAATAGCATAAGAAATGGCAGGAAACATTATAATAATTGCTACGGTTGCATGTGTTGTGGCCATTAGATGACGAGTTCTAACATCATATAAGCATTAGCACTTTATACTAAATGCACTCACCCAATAAGGATGATTTTCTTCGTTCCCCTGTCTTTTACCCCCCTATTTACTAAATGAAATTCATGCAGTTCACCGATGGTTCTTCTGAAGTGGAACTGAGGTTACAACTTGAGACTCAAGACATTCGAAGTTCAAAAGATGTTTTTGTGGATGCAAATGAAACCTCTTTGACTATTAGAGTACGACGCTTGGGATCTATTGTTACTCTTCTGGAAACAAAGCAACTATTTGAGAAGATTAAACCTGCAGAAACAATATGGTTTGTCGTTGTTGTCATTGTAGATAACCTACTACATCCAGTATGAATTTCAATTTCTGAATATGACATTGCTTATGTTGAACAGGTATATTGATGAAGATCAACTAGTTATAAGCTTAAAGAAGCATGATCCAGACTTGAAATGGCCAGACATTGTAGAGTCTTGGGAATCCCTAACAGCAGGATCTACACAGCTTCTAAAGGGAACATCTATATATTTGATAGGGGATGCGACAGATATTAACCAAAAAGTTGCTCATGAACTCGCGGTTGGACTTGGGTACGGTGTTTACTCTATCTTGGGTCATTTTAATCTTCCAACGGTCTAAGTTGATAATGGTCGTCACATAAATTGCTAGTTTATTTGAAACGACTGATTGTTTGTAATGTTCATCAACCGAATTGTGGCCTTGTAACATAACAACTTAAACAAGGTAAATATTTTTCTCCAGATAGTACATACTTCATCAGTTATCATAGGTAAGAAAAACGTTAACTCCCATTTTTCAATTATTAACATCAAAGACTTTTGACAAATTTATGCCCTCTAGGTGTTTTGAAATGCCCACTTAACCGTGTGCCTAGGCCCATGACATTCCTCAATGCTCAATGCCTACTAAGGAAAGTTTGAAGTTTAAATTAATACAACTATTAGTTTGAAGCTTATATCAAAGTTTTGGGGCATAAATTTATTTCCCTCCAAAAAAAAGTCTTACCTCGGAGGAAGAAATCTATTAATATTCTTAAAATGTCCTTGTTTTTTTTCCCTATAATCTCAAATAAAAACTATGCTTTCTTAAAATTTTATCACGTTATTTTTTGTCATACAATATTTCTTCATATACAAATAAATTATTTACATATTTCTTTTGTGTATTCATAAAAGCCCACACTTTTTTTCGCCTCGTACTTGAGCCATGGAGGGCTATCGTGCTCTAGTGTGCCCAAGGCTTTAAAAAACACTACCCCTTTCTACAATTATTCCTGCTAATTTTGTCAAACTTTCATCTGAGAAATTTTATTGGCTTCATTCTTAGGTATACTCCACTGAGTACAAAAGAATTGCTGGAAACGTTTTCCAAGCAGAACATTGATTCATGTAAGTACTATTTACTCTAGCCATGCTTTGATGCCACTAATTACCATCAGGGTTGTTGAGGATTGTGGTTGTTGAGGATTGTTGGGATGGAGTCCCACGTTAGCTAATTTAGGGAATGATCATAGGTTTATAAGCAAGGAATAGTATCTCCATTGGTATTGAGGCCTTTTGGGGAAGCCCAAAACAAAGCCACGAGAGCTTATGCTCAAAGTAGAAAATATCATACCTAAAATGGTATTAGAGCCATGCCCTAAACTTAGCCATGTCAATAGAATCCTCAAATCTCGAACAAAGTATTGTGAGGTTCGAAGGTATAGTCAAAAGTGACTGAAGTGTCGAACAAAGGGTGTACTTTGTTCAAAGACTCCAAAAAAGGAGCCGAGCCTCAATTAAGGGGAGGCTACTCGAGGGCTCCATAGGCCTCAGGGGAGGCTCTATAGTCTACTTTGTTCGAACAAAGGGTGTACTTTGTTCAAAGACTCCAAAAAAGGAGCCGAGCCTCGATTAAGGGGAGGCTACTCGAGGGCTCCATAGGCCTCAGGGGAAGCTCTATAGTCTACTTTGTACGAGGGAAGGATTGTTGGGGATTGTTGGGATGGAGTTCCACCTTGTCTAATTTAGGGAATGATCATGGGTTTATAAGCAAGGAATAGTATCTTCATTGGTACGAGGCCTTTTGGGGAAGTCCAAAGAAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCACTGTGGAGATCCATCATTACTAACAAGGGTCTTATAAACTTCTATCCCTTTCAACCATAAACACAGAGTTTTTCTAGAGAGAAAAACGGATTTCCTTGACTACTAACAATTTAATAATTTGGTCTATATTGATTCTGAGGTCAGAATATTATGTACCTGTCTCTTTATTTCTCATCTATTAGAAAAGTGCAGAATGGAAGGCCCTCACTAAAAAAGAGGACTCCAAGCCAAAAGGGAAGCACAGAAACTTGCACAAAAAAGATCCCTAATTTTTTGTAACAGAAAATAGTGGGTAATCACAAAATAAATTTGAATTAGGAGTCTAGAAGGAAGCGCTAAATGCGCTACCTCCTCATGCAACTTCTTCTTCTTCTTGATTTGAGGACTCAAAACTGCTTCTATCATCTCATTGAACTAAAAAAAACAAAAACTCTACCCCAAGAAATTCCATTTTATGGAAGTAAAAAGGCCCACGAAATATGATTCATATCCTCTGCCATGCTCTTACACACCAGTTACGACCAAAGACAAAAGAATAGCTTTAGTATTGATTCTTCTGAGGGCTGCAAGCCAGCAAAGAGCTGCATATTCTCTAAAAATTTAAACTTCCACTGAGTAAAGAAGAAAGAGTGTGTGTGAGAAGAAACCGAAAAGACACCAATCATAACAAAGCAGAAATAAAGCGAAAAACTTAGAAATTCTCAGTTGCAGGGGTCGGCCTCGGCCTCCCACTGTCGAACATCCATGGTGATTGCCACCATTCTTGTTTCTTCAGATAGCATTCTTTTTGAAGCTTTCTGCTCCCCCCTTACCATCCCAACACCATTTGGCGTTGGAAATTTCATGACTTGGCTGTAAGCTGATGGAATGGCCTTTAATTCGTGTAGCGTTGGTCTCCCTAAGAGTGCATTATAAGCTAAAGAACAATCCACCACAAGGAAGTTCACCATCTTCCCTACTGACTTGGAGTTTTCCCCAAAGGTCATGGGAAGTTCAATGTTGCCTTTAGAATTGATACGATTGTGCCCCTGAGAAAGTCATCGAGGATGATGACTAAGTTAAGTGGGAGAGAGTGTCACAACCTCACTGAGAGAAAGTAGGGTGTGACCCCCACACGTAAGATAGCTAAGAGGCGACTCTCAAGTGGCGCCCATTCGGCCACATGAGGATCAAAATTGAGAATTGCCATGATGCGACTAAGGAGCACAGTGCATCATCCAACACACCTAGAGTGCATTGAAGCTAAGTAGAGACATACGCAAGGTTCGAGAGAACGAGGGGACACGAGTGCCGAAGACAAGCTCGAAGAGGGTTGGGTAGGACCTCGGGCCATAACCTCAGAAGTCGGGATTTCAATATGAGTTTTGGTACGCGGCTTGAGAATTAAGTCCGTCTGTATGAAAGATGAAAGTTCACCAAACCTTCTCCGAGAAGGGTTGGACAGCTCCTTAGTCGCTCTCTTCCGAGGTTCATTGTATTAAATGTTGTCAAAGATAGGACATCGGTTGAACTTCCTCCATTGACCAAAATACGATGGACTTTCGATTGGCGATGGTTAGAGCTACCACCAAGACATTTTGAGATGGATGGAGGGCCTAAACTCTTTAAACTCGATATTTTGGGTCACACTCTGCACATGGGCTGAGTACACTCCATTGCCCTCAGGTGCAAAGCTATACTCGTGTGACCCAACCCAACGCCTTTCAGAACCTTGAGCAAGACCGTGCAATTAAACCCAAAAATAAACCTAGCCAAGTGTGTTGATGCGCTGATCCTGACCTTAGATACTTGTAGGGAAGTCTCTTATACTGCGGTAGTAAGGGTCCTACTCTCATTAATTGATTTTCACATCAACATTTTATTTAGTGGTGTGAAGTTTAGCTACAATAAATGTAGTTTTATGAAAGGGAAATTTCTAGTGTGAGCATAGTGGGTACTACGAGAGTATTGGAAAATTTTCTGCTACTCAAGTTTAGTTTCAACAAATTCTAGATAGATGTGTGTTTTTGCCTCAAGACTTGCGAGACTCGCCCATACTCCAAGCTCACTCATTAAAACAAATAATAATAGAAAGAAAGAGACTCAGTTCATTCCTTAAGGAGGCAAGGAACTTACATAACCTCGATCCGACCCAATTTGAATTTTTTCAATATTTTCCACAAGGGTGTTCCCTGCGTGAATTTCTCATCTTTGGATGCATAGGTAGACATTGAAAGATACTCCAACAATTGTGTGAGGAATACTAACAAGTTCCACATTCGGTTCATGGTTTATAAGTGAGGACAATTATCTCAGGCCGTATGAAGCCTTTTGCATGATTCCTAAAAAAAAAAACCATTAAGGCCTATGCCCAAAGTGAATTATGTTATACCATTAAAAGATAGGCGGAGGGTGTTTTGTTCTTATCCAATTATTTTCAAATCTACAACTTGAAATTTTTAGAAAATTGGTGTAGCCAAAGAAAAAAGGGGAAATTCTCTCCAAGGAGTCTAAACTCAATATTACCAATCCAATGTTAATGAATACAAGAGAGCAATTCTCTATTTATCTTTATAGTGAATTGGAACAAACCAAAAGTTTAAAACATAAAATTAGAAACTAAAAGGATTTATCCAAGAATTAACCCGAACTACTAAGGTTAACTAACTATCCTCGCATGCATATTCACAATAGGAGGCTTAACATCAGGTTCCTATGATTTACCATTTACCTCAAGATTTGATAGTGCCAACTCAGACAGAAGCAAAATTGCGTTACACGCTTTGAAATGACTTTTATCCCCGATTTTGCAGTGTGTTAATGACTAATCAATTCCAGGGATGCTTGCCGAAGGCTCTGATGCTGTAGCACAAGCAGAAAACGCTGTATTAGAAAGTTTAAGCAGGTATATCCAAAACTTGTCCATCTTTTTAGCATTTGCTTGATTAATAGAATTGGAGAATGTATGTTCTCTTTCCTGTTGATTATGCAGCCATGTACGTACTGTTGTTGCAACGCTAGGTGGTCGACCGGGAGCTGCAGGAAGAACTGATACTTGGAGACATCTTTATGCAGGATTCACTGTCTGGCTTTCACAAACTGAGGCTACGGGTAACTTCTTCCATACATTGTCTCTGTTCTGTTCTATTTAGTTCCAAAAGAAATAGAAAAAGACAGAAGAGAAACATTTATAAATCTCTATGGGATTAAATTAAGCATTTACTTTCTTTGTCCTATGGATTTCTTTCCCTCGATAAAACTGTTTTTCAGAACCTGAATCTCGGTCGATCTTACCTCATTCACCCTTGTCAGATCATTAATTTTTTAGGCTTTATTGGTAAATAAGTGTCAAGCCAGTATGAAACAGGAGAGCCCTTTCCGGGCAAGGTTCTTTAGGCTCCGTTTTTCCTCTAATATTGAGGGGTTGGAAGAATCCCGCATCATCGCAACTTTTCTGAATTTAAGAACTTGATTCTTTAAATGCAGATGAAAGTGCAGCTAAGGAAGAAGCTAGGAGACATATGCAAGACAGTAAGGTAGCATACTCAAACGCAGAAGTTGTAGTTAAACTTCAGGGTTGGGATGATGCTCATTCCAAAGCAGTGGCTCAGGCAGCATTAAGTGCCCTTAAGCAACTTATTCTGTCAGACAAAAACCTTCCAGGTATACTTTGTGTCACCTAATCTGGAATTCTATTGTATTTGGAATAACTTGCATAAAACATTGTTTTTTTAAACAAAATCAATTCTTATATAAACTATGGAGTATTTATAATTTAAAGTATGTTTAGCATAGATCGATCGGGTATGTTTGGAATACCTTCTAAGTTAAAACTCTTTTGAAAAAATTATTTTTAACAAAAAAAAAGTAATTACATCTATTTTTTTTTCTTTTTTCCAAAATTGTGTTTTTAGTAAAAAAAAAGTCTTGGTTACTTTATATTCAAAAGTGATTTTACTAAATCATAAATATGTTTTTATTTCTTAATACATATTTTAAGCATCAGTTTTAGTCATCTAAAATCATTTTTAAAAGTTACAGTAAACCTATTAGACGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGACTTTGCTTTGGGGTTCCCCAAAAGGCCTCATCCCAATGGAGAGAGTATTTTTTTATATTATAAATCCATGATCATTCTTTAAATTAGTCGATGTGGGACTTTCATCATCCACCAATACCTCACCTCGAACAAAGTGCGCTCCTCTTAGTCGAGGCTCGACTCCTTCGGAGTCTTAGTCATTTTTTACTGCCGTCGAGAAGGCTTGACTCCTTTTCTTTTGGAGTCCTTTGTTCGATATTTAAGGATTTACCAATCAACACAACTAAGTTTAGGGCATGACTCTAATACCATATCAGACGAACACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAATGCCTCATCCCAATGGAGAGAGTATTCTTTGATTATAAACTCGGAATTAGTCGATGTAGGACTTTCATCATCCACCAACAAAACCCACACTTCATAATTATTATATTTTCTAAATGTACTCAGAAAATTTTATTTTGTTTAAAAAAAGAAAATTTTCCCCGTTTCATACCCACTACATCTCACACAGAAACATGACTTATTTCTTGTTACATGTTGAGATAAAATTAGAAGAATATTAATGCATATATATATATTACTTCAGACAGTGTTACTGATAGATTGGGGACTAATATCAGATCTGATGCCATTGAATTATGATCCATACGAATATGATATCATACTGACATGTATATGAATTTCACGATTGTCGATATGAAGTCCCTTGTTTAGCTTGAACTTTGAGGTGTTTGTTATGACTCAAAAAACACCCACAAACAACAAGAATGAGTATTTATTGAAAATATTAGTAGGATATCAGTAAAGGCTATTATAGTACTTAGCTAAGCTAGTGGTATTGGTTATAAATAAAGGACAATTGTTATATTATAATTTCTCTTGATATTGTAATATATTACTATCTTCGTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTGTTTGTTTGTTTGTTGTGGTGTTTGGATACCCAATAGAATGCTTAGCCACAGCTTTGCTGAGGCAGCCTAGGAATAGTTCGTCATCATGCTTCTTTTCTTGGGGCTGCTCAATTTTTCCAGATTTGCAATTTATTTCGATCTTTGATTTGTTTGTGAATTAATACATTAAAGATCGAAACATTGAGGCTGTCGATTTTCTTTGCAGTTTGAATGATTACAGCTCGTGTGGTTCGTTTATATTTCAATTGAGCAATTTCCTCTGCTATGTTATTGTAGATAAGAAAAGTCTTTACATCCGATTGGGATGTCGTGGTGACTGGCCAAACATCAAACCTCCTGGTTGGGATCCTGCTTCTGATGAAAACACAAAGAACACCAGTGCCTGAAACAGAGGCTTTGCGGCTCTTTATTTCCACATTAAGGTTTCATTCAACAAATTTTCTGGTAATTTCACTCTTCTCCACCCTCAATTGTACCTTTGAAAAGAAAGGGGTTTGTTAATATGTGATTCCGCAGATAAAATTGAAGAACAAAAGCCCTTCTTTTTTTCTTTTTTCCTTTTTTAAAAAAGAAAAAAAAAAAAGAAAAGAAAATGTGTATTATTGTTCGTTGGGTGGAATCAAATTATGAACGTGCCTGCAGAACTTTTACCACTTGGCATCCTCATTAAGGTTTTTAAATTTCTGTTCATTTGATTTGTAAACCTGTCGACATTACAAATTACAAATTTGAAAATTTAAGATTTTAC

mRNA sequence

AGACTCCGGTCACCATGTGCCGATCGCGCCTCCTGTAAACTCCTTATCCATTTTCCTCATTTTCTTCGCGCGAAGCTCTAATGGCTTCGGCGAGCTTTACCAGCGCTCTGTGTTTCTTTTCCCAAAACACTATAAGAAACCTCGAGGTCTCCTCTCCGATCTTCTATTCTAGCTCCAATGGCGTCGAATTCGCTTCCAATTCCATCGGTCTCACTTCCTGCACCGGCCTCCCTCCTGCAACTTCTCGTCTCAGTTCCCGTTTCACTCGTAACTGCTCCTCCAGCACCGCTCCAGTTCGCACTTTGGATTACGAGTTCACCGATGGTTCTTCTGAAGTGGAACTGAGGTTACAACTTGAGACTCAAGACATTCGAAGTTCAAAAGATGTTTTTGTGGATGCAAATGAAACCTCTTTGACTATTAGAGTACGACGCTTGGGATCTATTGTTACTCTTCTGGAAACAAAGCAACTATTTGAGAAGATTAAACCTGCAGAAACAATATGGTATATTGATGAAGATCAACTAGTTATAAGCTTAAAGAAGCATGATCCAGACTTGAAATGGCCAGACATTGTAGAGTCTTGGGAATCCCTAACAGCAGGATCTACACAGCTTCTAAAGGGAACATCTATATATTTGATAGGGGATGCGACAGATATTAACCAAAAAGTTGCTCATGAACTCGCGGTTGGACTTGGGTATACTCCACTGAGTACAAAAGAATTGCTGGAAACGTTTTCCAAGCAGAACATTGATTCATGGATGCTTGCCGAAGGCTCTGATGCTGTAGCACAAGCAGAAAACGCTGTATTAGAAAGTTTAAGCAGCCATGTACGTACTGTTGTTGCAACGCTAGGTGGTCGACCGGGAGCTGCAGGAAGAACTGATACTTGGAGACATCTTTATGCAGGATTCACTGTCTGGCTTTCACAAACTGAGGCTACGGATGAAAGTGCAGCTAAGGAAGAAGCTAGGAGACATATGCAAGACAGTAAGGTAGCATACTCAAACGCAGAAGTTGTAGTTAAACTTCAGGGTTGGGATGATGCTCATTCCAAAGCAGTGGCTCAGGCAGCATTAAGTGCCCTTAAGCAACTTATTCTGTCAGACAAAAACCTTCCAGATAAGAAAAGTCTTTACATCCGATTGGGATGTCGTGGTGACTGGCCAAACATCAAACCTCCTGGTTGGGATCCTGCTTCTGATGAAAACACAAAGAACACCAGTGCCTGAAACAGAGGCTTTGCGGCTCTTTATTTCCACATTAAGGTTTCATTCAACAAATTTTCTGGTAATTTCACTCTTCTCCACCCTCAATTGTACCTTTGAAAAGAAAGGGGTTTGTTAATATGTGATTCCGCAGATAAAATTGAAGAACAAAAGCCCTTCTTTTTTTCTTTTTTCCTTTTTTAAAAAAGAAAAAAAAAAAAGAAAAGAAAATGTGTATTATTGTTCGTTGGGTGGAATCAAATTATGAACGTGCCTGCAGAACTTTTACCACTTGGCATCCTCATTAAGGTTTTTAAATTTCTGTTCATTTGATTTGTAAACCTGTCGACATTACAAATTACAAATTTGAAAATTTAAGATTTTAC

Coding sequence (CDS)

ATGGCTTCGGCGAGCTTTACCAGCGCTCTGTGTTTCTTTTCCCAAAACACTATAAGAAACCTCGAGGTCTCCTCTCCGATCTTCTATTCTAGCTCCAATGGCGTCGAATTCGCTTCCAATTCCATCGGTCTCACTTCCTGCACCGGCCTCCCTCCTGCAACTTCTCGTCTCAGTTCCCGTTTCACTCGTAACTGCTCCTCCAGCACCGCTCCAGTTCGCACTTTGGATTACGAGTTCACCGATGGTTCTTCTGAAGTGGAACTGAGGTTACAACTTGAGACTCAAGACATTCGAAGTTCAAAAGATGTTTTTGTGGATGCAAATGAAACCTCTTTGACTATTAGAGTACGACGCTTGGGATCTATTGTTACTCTTCTGGAAACAAAGCAACTATTTGAGAAGATTAAACCTGCAGAAACAATATGGTATATTGATGAAGATCAACTAGTTATAAGCTTAAAGAAGCATGATCCAGACTTGAAATGGCCAGACATTGTAGAGTCTTGGGAATCCCTAACAGCAGGATCTACACAGCTTCTAAAGGGAACATCTATATATTTGATAGGGGATGCGACAGATATTAACCAAAAAGTTGCTCATGAACTCGCGGTTGGACTTGGGTATACTCCACTGAGTACAAAAGAATTGCTGGAAACGTTTTCCAAGCAGAACATTGATTCATGGATGCTTGCCGAAGGCTCTGATGCTGTAGCACAAGCAGAAAACGCTGTATTAGAAAGTTTAAGCAGCCATGTACGTACTGTTGTTGCAACGCTAGGTGGTCGACCGGGAGCTGCAGGAAGAACTGATACTTGGAGACATCTTTATGCAGGATTCACTGTCTGGCTTTCACAAACTGAGGCTACGGATGAAAGTGCAGCTAAGGAAGAAGCTAGGAGACATATGCAAGACAGTAAGGTAGCATACTCAAACGCAGAAGTTGTAGTTAAACTTCAGGGTTGGGATGATGCTCATTCCAAAGCAGTGGCTCAGGCAGCATTAAGTGCCCTTAAGCAACTTATTCTGTCAGACAAAAACCTTCCAGATAAGAAAAGTCTTTACATCCGATTGGGATGTCGTGGTGACTGGCCAAACATCAAACCTCCTGGTTGGGATCCTGCTTCTGATGAAAACACAAAGAACACCAGTGCCTGA

Protein sequence

MASASFTSALCFFSQNTIRNLEVSSPIFYSSSNGVEFASNSIGLTSCTGLPPATSRLSSRFTRNCSSSTAPVRTLDYEFTDGSSEVELRLQLETQDIRSSKDVFVDANETSLTIRVRRLGSIVTLLETKQLFEKIKPAETIWYIDEDQLVISLKKHDPDLKWPDIVESWESLTAGSTQLLKGTSIYLIGDATDINQKVAHELAVGLGYTPLSTKELLETFSKQNIDSWMLAEGSDAVAQAENAVLESLSSHVRTVVATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARRHMQDSKVAYSNAEVVVKLQGWDDAHSKAVAQAALSALKQLILSDKNLPDKKSLYIRLGCRGDWPNIKPPGWDPASDENTKNTSA

Homology

[Close]

BLAST of CmaCh16G011860 vs. ExPASy Swiss-Prot
Match: O82290 (Probable inactive shikimate kinase like 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SKL2 PE=2 SV=2)

HSP 1 Score: 466.8 bits (1200), Expect = 2.3e-130
Identity = 244/376 (64.89%), Postives = 296/376 (78.72%), Query Frame = 0


Query: 7   TSALCFFSQNTIRNLEVSSPIFYSSSNGV------EFASNSIGLTSCTGLPPATSRLSSR 66
           T+   F S N IR    SSP  +S  + +       F+ N I             R +S 
Sbjct: 21  TTQATFLSSNRIR----SSPRVFSGFHSLRRRGFRRFSQNVI-----------PDRFNS- 80

Query: 67  FTRNCSSSTAPVRTLDYEFTDGSSEVELRLQLETQDIRSSKDVFVDANETSLTIRVRRLG 126
           F+ NC S+ +   T+DYEFTDG  EVELRL+L+T +I S KD+ VDA+ TSL ++ +R G
Sbjct: 81  FSCNCLSAVS-TSTIDYEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSLAVKEKRNG 140

Query: 127 SIVTLLETKQLFEKIKPAETIWYIDEDQLVISLKKHDPDLKWPDIVESWESLTAGSTQLL 186
            ++TLLET  LFEKI P+ETIWYIDEDQLV+++KK D +LKWPDIVESWESLTAG  QLL
Sbjct: 141 LLITLLETNHLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESLTAGMMQLL 200

Query: 187 KGTSIYLIGDATDINQKVAHELAVGLGYTPLSTKELLETFSKQNIDSWMLAEGSDAVAQA 246
           KG SIY++GD+T+INQKV+ ELAVGLGY+PL +KELLE+FSKQ IDSW+LAEG D+VA+A
Sbjct: 201 KGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAEGPDSVAEA 260

Query: 247 ENAVLESLSSHVRTVVATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARR 306
           E++VLESLSSHVRTVV+TLGG+ GAAGR D WRHLY+GFTVW+SQTEATDE +AKEEARR
Sbjct: 261 ESSVLESLSSHVRTVVSTLGGKHGAAGRADQWRHLYSGFTVWVSQTEATDEESAKEEARR 320

Query: 307 HMQDSKVAYSNAEVVVKLQGWDDAHSKAVAQAALSALKQLILSDKNLPDKKSLYIRLGCR 366
             Q+ ++ YSNA+VVVKLQGWD  H+K+VAQA+LSALKQLI+SDK LP KKSLYIRLGCR
Sbjct: 321 SKQEREIGYSNADVVVKLQGWDPTHAKSVAQASLSALKQLIISDKGLPGKKSLYIRLGCR 379

Query: 367 GDWPNIKPPGWDPASD 377
           GDWPNIKPPGWDP+SD
Sbjct: 381 GDWPNIKPPGWDPSSD 379

[Close]

BLAST of CmaCh16G011860 vs. ExPASy Swiss-Prot
Match: Q31PU5 (Shikimate kinase OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=aroK PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-07
Identity = 34/104 (32.69%), Postives = 51/104 (49.04%), Query Frame = 0


Query: 180 LKGTSIYLIGDATDINQKVAHELAVGLGYTPLSTKELLETFSKQNIDSWMLAEGSDAVAQ 239
           L G  ++L+G        +   LA  LGYT + T  L+E  + ++I     ++G     Q
Sbjct: 7   LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTGRSIPEIFASDGEAGFRQ 66

Query: 240 AENAVLESLSSHVRTVVATLGGRPGAAGRTDTWRHLYAGFTVWL 284
            E  VLE ++S+ R VVAT G   G   R + W +L  G  +WL
Sbjct: 67  IETQVLEEVASYRRLVVATGG---GIVIRPENWSYLQQGLVIWL 107

[Close]

BLAST of CmaCh16G011860 vs. ExPASy Swiss-Prot
Match: Q5N4D3 (Shikimate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=aroK PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-07
Identity = 34/104 (32.69%), Postives = 51/104 (49.04%), Query Frame = 0


Query: 180 LKGTSIYLIGDATDINQKVAHELAVGLGYTPLSTKELLETFSKQNIDSWMLAEGSDAVAQ 239
           L G  ++L+G        +   LA  LGYT + T  L+E  + ++I     ++G     Q
Sbjct: 7   LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTGRSIPEIFASDGEAGFRQ 66

Query: 240 AENAVLESLSSHVRTVVATLGGRPGAAGRTDTWRHLYAGFTVWL 284
            E  VLE ++S+ R VVAT G   G   R + W +L  G  +WL
Sbjct: 67  IETQVLEEVASYRRLVVATGG---GIVIRPENWSYLQQGLVIWL 107

[Close]

BLAST of CmaCh16G011860 vs. ExPASy Swiss-Prot
Match: Q8DKH7 (Shikimate kinase OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=aroK PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-04
Identity = 34/104 (32.69%), Postives = 47/104 (45.19%), Query Frame = 0


Query: 180 LKGTSIYLIGDATDINQKVAHELAVGLGYTPLSTKELLETFSKQNIDSWMLAEGSDAVAQ 239
           L G +IYL+G            LA  LGY+ + T  ++  F ++ I      EG  A  +
Sbjct: 7   LGGANIYLVGMMGAGKTTTGRLLAQRLGYSFVDTDAVITAFRQRPIREIFAQEGEPAFRE 66

Query: 240 AENAVLESLSSHVRTVVATLGGRPGAAGRTDTWRHLYAGFTVWL 284
            E  VL  +SS+   VVAT G   G       W +L+ G  VWL
Sbjct: 67  LEQQVLAQVSSYHHLVVATGG---GIVLNPMNWSYLHHGIVVWL 107

[Close]

BLAST of CmaCh16G011860 vs. TAIR 10
Match: AT2G35500.1 (shikimate kinase like 2 )

HSP 1 Score: 466.8 bits (1200), Expect = 1.6e-131
Identity = 244/376 (64.89%), Postives = 296/376 (78.72%), Query Frame = 0


Query: 7   TSALCFFSQNTIRNLEVSSPIFYSSSNGV------EFASNSIGLTSCTGLPPATSRLSSR 66
           T+   F S N IR    SSP  +S  + +       F+ N I             R +S 
Sbjct: 21  TTQATFLSSNRIR----SSPRVFSGFHSLRRRGFRRFSQNVI-----------PDRFNS- 80

Query: 67  FTRNCSSSTAPVRTLDYEFTDGSSEVELRLQLETQDIRSSKDVFVDANETSLTIRVRRLG 126
           F+ NC S+ +   T+DYEFTDG  EVELRL+L+T +I S KD+ VDA+ TSL ++ +R G
Sbjct: 81  FSCNCLSAVS-TSTIDYEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSLAVKEKRNG 140

Query: 127 SIVTLLETKQLFEKIKPAETIWYIDEDQLVISLKKHDPDLKWPDIVESWESLTAGSTQLL 186
            ++TLLET  LFEKI P+ETIWYIDEDQLV+++KK D +LKWPDIVESWESLTAG  QLL
Sbjct: 141 LLITLLETNHLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESLTAGMMQLL 200

Query: 187 KGTSIYLIGDATDINQKVAHELAVGLGYTPLSTKELLETFSKQNIDSWMLAEGSDAVAQA 246
           KG SIY++GD+T+INQKV+ ELAVGLGY+PL +KELLE+FSKQ IDSW+LAEG D+VA+A
Sbjct: 201 KGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAEGPDSVAEA 260

Query: 247 ENAVLESLSSHVRTVVATLGGRPGAAGRTDTWRHLYAGFTVWLSQTEATDESAAKEEARR 306
           E++VLESLSSHVRTVV+TLGG+ GAAGR D WRHLY+GFTVW+SQTEATDE +AKEEARR
Sbjct: 261 ESSVLESLSSHVRTVVSTLGGKHGAAGRADQWRHLYSGFTVWVSQTEATDEESAKEEARR 320

Query: 307 HMQDSKVAYSNAEVVVKLQGWDDAHSKAVAQAALSALKQLILSDKNLPDKKSLYIRLGCR 366
             Q+ ++ YSNA+VVVKLQGWD  H+K+VAQA+LSALKQLI+SDK LP KKSLYIRLGCR
Sbjct: 321 SKQEREIGYSNADVVVKLQGWDPTHAKSVAQASLSALKQLIISDKGLPGKKSLYIRLGCR 379

Query: 367 GDWPNIKPPGWDPASD 377
           GDWPNIKPPGWDP+SD
Sbjct: 381 GDWPNIKPPGWDPSSD 379

The following BLAST results are available for this feature:

BLAST of CmaCh16G011860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82290	2.3e-130	64.89	Probable inactive shikimate kinase like 2, chloroplastic OS=Arabidopsis thaliana...	[more]
Q31PU5	3.2e-07	32.69	Shikimate kinase OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=114...	[more]
Q5N4D3	3.2e-07	32.69	Shikimate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/...	[more]
Q8DKH7	1.1e-04	32.69	Shikimate kinase OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=aro...	[more]

BLAST of CmaCh16G011860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35500.1	1.6e-131	64.89	shikimate kinase like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 64..174 e-value: 2.1E-13 score: 52.3
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 68..170
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 175..351 e-value: 1.6E-11 score: 46.4
IPR031322	Shikimate kinase/gluconokinase	PFAM	PF01202	SKI	coord: 198..291 e-value: 3.5E-5 score: 24.0
IPR007052	CS domain	PFAM	PF04969	CS	coord: 77..155 e-value: 1.2E-5 score: 26.2
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 72..166 score: 12.173504
None	No IPR available	PANTHER	PTHR21087	SHIKIMATE KINASE	coord: 77..380
None	No IPR available	PANTHER	PTHR21087:SF23	INACTIVE SHIKIMATE KINASE LIKE 2, CHLOROPLASTIC-RELATED	coord: 77..380
None	No IPR available	CDD	cd06467	p23_NUDC_like	coord: 77..166 e-value: 2.89308E-12 score: 60.2538

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G011860.1	CmaCh16G011860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity