CmaCh16G011840 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G011840
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	SANT domain-containing protein
Location	Cma_Chr16: 9056611 .. 9059395 (+)
RNA-Seq Expression	CmaCh16G011840
Synteny	CmaCh16G011840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTGTTTGGAGGGCAACCAGACTTATCTCTTCAAATTAGGCCTCCAAATTCAAAACCCTCTTCCAAGGGAAGCTGGAGAACACAGCAACCCATTTCCTCTATTCCTTCACACAACCCTCTGGATTTCCTCTTTTTCAATAACTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATTTTGGCCCTTCTCTTTCTAATCCTAATCCCTCCCATTTCCTCCACCACCATCTCCTCCCCGCAGCTACCAATGTCGGTGGTGGTGGTGGCGGCGGAGTTTTCCACGGTCATCCCCGTGATCTTCATCATCAAGGCCTTGGATTCTCGACACCCATTAGGGGAATTCCCGTCTATCAAAACCCTCCTTCCTCTTCTTCTTCTTCCTCTTCTTACCCGATATTTGGGAGTGGCGGTGGCGGCGGCGGTGGTGGCATTCAATTTAACTACAACGCCCTTCGATCGAGATTATTGGCGAGGTTTCCAGCCAAACGGAGTATCCGTTCGCCGAGAATGAGGTGGACTACCACTCTCCATGCTCGTTTTGTTCATGTTGTTGAGTTTTTAGGTGGCCATGAAAGTAAGTAAAAGCTTACACTCATATCTCTCTCTCTAACTTTTTCCTCTCTCTTTCTTTCCCATTTTTTCTCTCTCTAAAAAGCTTGCAAAGATTCATTCCTCTCAAAGTTTTTTCTTCAAATTTCTCTTTTTTGAGCTTGATTGAAAAAACCCACCTTGTTTTTTTTCTTTAATTCTTCACTCTCTCACTACATATTTGCAAATTTTCATCTCTCTCTCTCCTCCTTTTCTCTCTCTAAAACTAGAGAGAGAAAGAGAACTTTCCAAAAGAAAAAAAAATGAAACTCTCTCTCTCTCTAGACATGAATTCAACAGCTCTGATTTTTATATCTGAAATTTTTCGATGTGGGATTTGATGATTAGGAGCCACACCCAAATCAGTTCTTGAGCTCATGGACGTCAAAGATCTCACCTTGGCTCATGTCAAGTCCCATTTGCAGGTTTGAATCACTCCCTTTCTCTCTCTAAAAAATGGGTTATTTACGTTTGAATCACTCCATTTTCTCTCTCTAAAAAATGGGTTCTTTAGGTTTGAATCACTCCATTTTCTCTCTCTAAAAATGGGTTCTTCTCTCTCTAGAAAATGGGTTCTTCTCTCTCTAGAAAATGGGTTATTTAGGTTTGAATCAGTTCTTGAGGTGTGCTTAGATTCAAAATAATTAGGAGTATGGTGGGGTTGGGGTTGGTAGCAAAGCTGGTCGGATTATGAAGAAACTTCTGCATTATTGTACTTTAATATTTACGAACCTGAAACCATTAATATATGGCCTTCACATTTCTAACTATAAATGTTTCAAACTTCAAGGGCCTTTCATAAATTTCTTGCACTCATAAGGGCTCTTCTGCAATTTTTCTTTCTCCACCTTTTTTTTTCACTTTTAGAGAGAAACAGAGAGAGAGAGATTGGTTCGAGATGTAATGTTTTCGGACTCCCCGTCCGTCTTAAACGACTCTCGGAGTTCATGCTGATAACGAGAAATTATCCGAAGAAACCGTCACAACCTAGCTAAATAATTTCTGTGATATCCCACATCGGTTGAGGGAGGATAACGAAACACCCTTGATAAAGCATATTCGTTTTAAAAATCTTGAAGAAAAGTCAAAATAAGACAATATCTGCTGGTGATAGGTCTGAGGCCGTTATAGTTTCAATTCACCGTTAGATGTGTGGGAGAGAAACTGCAAACGTATCCCGAGCTTGTATTAAGTAGTTATGAACATGTCGATAAGCTTTTGAATCTACATTTAACGGTTGTTTTCACGATGGGCTCGTTAAATAATTTTTCTTCTTCTAAAATTAGGGTTTTTGTGATATTTATATAATCCCTTCATCTCTTTTTACAGATGTATAGAACGGTAAAGACCACTGACAAAGCTGCTGCTGCTGTAGCTTCTTCCGGTAAATTTAACCCTTTTTTCATCAAAGTTAGCACGTTTTGCCTAATACGTTAATTTTTTTTATTAGAATTAACACGAGTTTAAGTTACGATATAAATGTAGGGAATTCGGAAGTTTACGATCAAAATAGGTCATCGAGAGATACAACAACAAAAGATACAACGTACGAAAACGAGAAGTCATCAAGAACAAGACTTAACACTCCGACCACTGATTCTCCTCGGCATCAACTCTCGCCATCCTTCCACCAAGAATTTCGTAAAACCGTCAATGGAGAACAAGATCATCGTCGTACTCACACCGACCTTCCTGCCTTATGGAGTAATTCTTCGAGGTAAAACATAAAACCCTAGCTCCCTTCTCGAGAAATTATTAATACATATGATTGTCTATTCTAAACCGTTTGATATACGAGAGGGTTAAAAACGATACGATGACGTTTTTTTCTTTTCTTTAATATTAGAGAAGCTTTATTCCAAGGCATTATTCCAAAGGATTCCTCAGACAACCAGGCCTCTCAGCTTGATCAGGTACTTCATTTTCTAATATTTATAACAATTATTTTCCAAAATTAAATGCTACCCATTTCTTAAAAATCAGTAAAAAAATAGATTTTTACATAATTAATTTAATTTTAATTTAATTTTTAATTTTTTTAAAATATTAGAGATATTTGGAAGACAAGAGCTCAAGCCATGAAAGAACATCAGATGGAAGCTCACTGACAAATCTTTCAGCTGGAACCAGCCCACAAAAACCCAATTTGGAATTCACTTTAGGAATATCCATTTAG

mRNA sequence

ATGGAACTGTTTGGAGGGCAACCAGACTTATCTCTTCAAATTAGGCCTCCAAATTCAAAACCCTCTTCCAAGGGAAGCTGGAGAACACAGCAACCCATTTCCTCTATTCCTTCACACAACCCTCTGGATTTCCTCTTTTTCAATAACTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATTTTGGCCCTTCTCTTTCTAATCCTAATCCCTCCCATTTCCTCCACCACCATCTCCTCCCCGCAGCTACCAATGTCGGTGGTGGTGGTGGCGGCGGAGTTTTCCACGGTCATCCCCGTGATCTTCATCATCAAGGCCTTGGATTCTCGACACCCATTAGGGGAATTCCCGTCTATCAAAACCCTCCTTCCTCTTCTTCTTCTTCCTCTTCTTACCCGATATTTGGGAGTGGCGGTGGCGGCGGCGGTGGTGGCATTCAATTTAACTACAACGCCCTTCGATCGAGATTATTGGCGAGGTTTCCAGCCAAACGGAGTATCCGTTCGCCGAGAATGAGGTGGACTACCACTCTCCATGCTCGTTTTGTTCATGTTGTTGAGTTTTTAGGTGGCCATGAAAGAGCCACACCCAAATCAGTTCTTGAGCTCATGGACGTCAAAGATCTCACCTTGGCTCATGTCAAGTCCCATTTGCAGATGTATAGAACGGTAAAGACCACTGACAAAGCTGCTGCTGCTGTAGCTTCTTCCGGGAATTCGGAAGTTTACGATCAAAATAGGTCATCGAGAGATACAACAACAAAAGATACAACGTACGAAAACGAGAAGTCATCAAGAACAAGACTTAACACTCCGACCACTGATTCTCCTCGGCATCAACTCTCGCCATCCTTCCACCAAGAATTTCGTAAAACCGTCAATGGAGAACAAGATCATCGTCGTACTCACACCGACCTTCCTGCCTTATGGAGTAATTCTTCGAGAGAAGCTTTATTCCAAGGCATTATTCCAAAGGATTCCTCAGACAACCAGGCCTCTCAGCTTGATCAGAGATATTTGGAAGACAAGAGCTCAAGCCATGAAAGAACATCAGATGGAAGCTCACTGACAAATCTTTCAGCTGGAACCAGCCCACAAAAACCCAATTTGGAATTCACTTTAGGAATATCCATTTAG

Coding sequence (CDS)

ATGGAACTGTTTGGAGGGCAACCAGACTTATCTCTTCAAATTAGGCCTCCAAATTCAAAACCCTCTTCCAAGGGAAGCTGGAGAACACAGCAACCCATTTCCTCTATTCCTTCACACAACCCTCTGGATTTCCTCTTTTTCAATAACTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATTTTGGCCCTTCTCTTTCTAATCCTAATCCCTCCCATTTCCTCCACCACCATCTCCTCCCCGCAGCTACCAATGTCGGTGGTGGTGGTGGCGGCGGAGTTTTCCACGGTCATCCCCGTGATCTTCATCATCAAGGCCTTGGATTCTCGACACCCATTAGGGGAATTCCCGTCTATCAAAACCCTCCTTCCTCTTCTTCTTCTTCCTCTTCTTACCCGATATTTGGGAGTGGCGGTGGCGGCGGCGGTGGTGGCATTCAATTTAACTACAACGCCCTTCGATCGAGATTATTGGCGAGGTTTCCAGCCAAACGGAGTATCCGTTCGCCGAGAATGAGGTGGACTACCACTCTCCATGCTCGTTTTGTTCATGTTGTTGAGTTTTTAGGTGGCCATGAAAGAGCCACACCCAAATCAGTTCTTGAGCTCATGGACGTCAAAGATCTCACCTTGGCTCATGTCAAGTCCCATTTGCAGATGTATAGAACGGTAAAGACCACTGACAAAGCTGCTGCTGCTGTAGCTTCTTCCGGGAATTCGGAAGTTTACGATCAAAATAGGTCATCGAGAGATACAACAACAAAAGATACAACGTACGAAAACGAGAAGTCATCAAGAACAAGACTTAACACTCCGACCACTGATTCTCCTCGGCATCAACTCTCGCCATCCTTCCACCAAGAATTTCGTAAAACCGTCAATGGAGAACAAGATCATCGTCGTACTCACACCGACCTTCCTGCCTTATGGAGTAATTCTTCGAGAGAAGCTTTATTCCAAGGCATTATTCCAAAGGATTCCTCAGACAACCAGGCCTCTCAGCTTGATCAGAGATATTTGGAAGACAAGAGCTCAAGCCATGAAAGAACATCAGATGGAAGCTCACTGACAAATCTTTCAGCTGGAACCAGCCCACAAAAACCCAATTTGGAATTCACTTTAGGAATATCCATTTAG

Protein sequence

MELFGGQPDLSLQIRPPNSKPSSKGSWRTQQPISSIPSHNPLDFLFFNNFPSSSSSSSSSSSSSSNFGPSLSNPNPSHFLHHHLLPAATNVGGGGGGGVFHGHPRDLHHQGLGFSTPIRGIPVYQNPPSSSSSSSSYPIFGSGGGGGGGGIQFNYNALRSRLLARFPAKRSIRSPRMRWTTTLHARFVHVVEFLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAAAAVASSGNSEVYDQNRSSRDTTTKDTTYENEKSSRTRLNTPTTDSPRHQLSPSFHQEFRKTVNGEQDHRRTHTDLPALWSNSSREALFQGIIPKDSSDNQASQLDQRYLEDKSSSHERTSDGSSLTNLSAGTSPQKPNLEFTLGISI

Homology

[Close]

BLAST of CmaCh16G011840 vs. ExPASy Swiss-Prot
Match: Q9C616 (Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.7e-53
Identity = 186/428 (43.46%), Postives = 222/428 (51.87%), Query Frame = 0


Query: 1   MELFGGQPDLSLQIRPPNSKPSSKGSWRTQQPISSIPSHNPLDFLFFNNFPSSSSSSSSS 60
           MELF  QPDLSLQI PPNSKPSS  +W+ ++  +    H  LD  F+     S +SS  S
Sbjct: 1   MELFPAQPDLSLQISPPNSKPSS--TWQRRRSTTDQEDHEELDLGFWRRALDSRTSSLVS 60

Query: 61  SSSSSNFG---PSLSNPNPSHF----LHHH--LLPAATNVGGGGGGGVFHGHPRDLHHQG 120
           +S+S         LS  N SH      HHH  LLP   N         F    +  H QG
Sbjct: 61  NSTSKTINHPFQDLSLSNISHHQQQQQHHHPQLLPNC-NSSNILTSFQFPTQQQQQHLQG 120

Query: 121 L------GFSTPIRGIPVYQNPPS--------------------SSSSSSSYPIFGSGGG 180
                      PIRGIP+Y NPP                      SSS+SS  + G+   
Sbjct: 121 FLAHDLNTHLRPIRGIPLYHNPPPHHHPHRPPPPCFPFDPSSLIPSSSTSSPALTGNNNS 180

Query: 181 GGGGGIQF-NYN------ALRSRLLARFPAKRSIRSPRMRWTTTLHARFVHVVEFLGGHE 240
                +   NY+        R+R + RFPAKRS+R+PRMRWTTTLHARFVH VE LGGHE
Sbjct: 181 FNTSSVSNPNYHNHHHQTLNRARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHE 240

Query: 241 RATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAAAAVASSGNSEVYDQNRSSRDTT 300
           RATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAA   ASSG S+VY +N SS D  
Sbjct: 241 RATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAA---ASSGQSDVY-ENGSSGDNN 300

Query: 301 TKDTTYENEKSSR--TRLNTPTTDSPRHQLSPSFHQEFRKTVNGEQDHRRTHTDLPALWS 360
           + D  ++  + SR    L  P   S                 NG             LW+
Sbjct: 301 SDDWMFDMNRKSRDSEELTNPLEKS-----------------NG-------------LWT 360

Query: 361 NSSREALFQGIIPKDSSDNQASQL--DQRYLEDKSSSHERTSDGSSLTNLSAGTSPQKPN 383
           NSS EA   G +     DN A  +   ++ L+ K SS+ER S     ++  +GTSP KPN
Sbjct: 361 NSSGEARLHGKL----IDNVAEIMLPSEKELDGKCSSYERISSEEMSSSSISGTSPFKPN 387

[Close]

BLAST of CmaCh16G011840 vs. ExPASy Swiss-Prot
Match: Q941I2 (Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.3e-32
Identity = 144/397 (36.27%), Postives = 176/397 (44.33%), Query Frame = 0


Query: 1   MELFGGQPDLSLQIRPPNSKPSSKGSWRTQQPISSIPSHNPLDFLFFNNFPSSSSSSSSS 60
           MELF  QPDL L+I     +   K S    Q +        L F         S +S   
Sbjct: 1   MELFPSQPDLYLKISRRREEEQEKES----QELQEQEVERRLGF--------QSKASDLD 60

Query: 61  SSSSSNFGPSLSNPNPSHFLHHHLLPAATNVGGGGGGGVFHGHPRDLHHQGLGFSTPIRG 120
           + SS+N             L H L   + N          H    D   + +    PIRG
Sbjct: 61  NKSSNN-------------LIHTLQFTSNNEATKINSNQEHKESLDQDLRSIFMMRPIRG 120

Query: 121 IPVYQNPPSSS---SSSSSYPIFGSGGGG--------GGGGIQFNYNALRSRLL----AR 180
           IP+YQN        SS+S  P F S   G              FN +    R       R
Sbjct: 121 IPLYQNQVLDHYYYSSTSPNPFFFSEVNGQHASRRLITNPNCSFNLHNRHRRQAQPQPPR 180

Query: 181 FPAKRSIRSPRMRWTTTLHARFVHVVEFLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 240
           F AKR +R+PRMRWTTTLHA FVH V+ LGGHERATPKSVLELMDV+DLTLAHVKSHLQM
Sbjct: 181 FTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQM 240

Query: 241 YRTVKTTDKAAAAVASSGNSEVYDQNRSSRDTTTKDTTYENEKSSRTRLNTPTTDSPRHQ 300
           YRT+K+T+K                                          PTT S +  
Sbjct: 241 YRTIKSTEK------------------------------------------PTTSSGQSD 300

Query: 301 LSPSFHQEFRKTVNGEQDHRRTHTDLPALWSNSSREALFQGIIPKDSSDNQASQLDQRYL 360
                  E    VN E++ R    +L  LW+NSS EA FQ +  K SS    S  +  + 
Sbjct: 301 C------ENGSQVNSEREAR----NLTGLWNNSSSEARFQ-LKAKASSGVDISSNENEWK 315

Query: 361 EDKSSSHER-TSDGSSLTNLSAGTSP--QKPNLEFTL 380
             +  S+ER +SD SSLT    GT P  + PNL+FTL
Sbjct: 361 NRRCPSNERLSSDSSSLT----GTRPETETPNLDFTL 315

[Close]

BLAST of CmaCh16G011840 vs. ExPASy Swiss-Prot
Match: Q0J235 (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 1.9e-31
Identity = 80/132 (60.61%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 129 SSSSSSSSYPIFGSGGGGGGGGIQFNYN----------ALRSRLLARFPAKRSIRSPRMR 188
           S S +  SY + G+   G  GG   +++          AL SR + + PAKRS+R+PRMR
Sbjct: 269 SVSDTLRSYGVPGAAAPGVIGGAHHHHHHLHGGQPFVGALASRFMPKLPAKRSMRAPRMR 328

Query: 189 WTTTLHARFVHVVEFLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAAA- 247
           WT+TLHARFVH VE LGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK+TDK AA 
Sbjct: 329 WTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDKPAAS 388

[Close]

BLAST of CmaCh16G011840 vs. ExPASy Swiss-Prot
Match: Q93WJ9 (Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.8e-30
Identity = 103/282 (36.52%), Postives = 142/282 (50.35%), Query Frame = 0


Query: 109 HQGLGFSTPIRGIPVYQNPPSSSSSSSSYPIFGSGGGGGGGGIQFNYNA-LRSRLLARFP 168
           ++ L  S  ++G+P++ +        + Y + GS           +++  +RSR L + P
Sbjct: 158 YRSLQSSPRLKGVPLHHH-----HHHNQYGVVGSSDSSSPHHHNHHHHGMIRSRFLPKMP 217

Query: 169 AKRSIRSPRMRWTTTLHARFVHVVEFLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 228
            KRS+R+PRMRWT++LHARFVH VE LGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR
Sbjct: 218 TKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 277

Query: 229 TVKTTDKAAAAVASSGNSEVYDQNRSSRDTTTKDTTYENEKSSRTRLNTPTTDSPRHQLS 288
           TVKTT+K AA+   SG  E+          ++ D   +++ +S  +    ++  PR    
Sbjct: 278 TVKTTNKPAASSDGSGEEEMGINGNEVHHQSSTDQRAQSDDTSLHQETDISSTQPR---- 337

Query: 289 PSFHQEFRKTVNGEQDHRRTHTDLPALWSNSSREALFQGIIPKDSSDNQASQLDQRYLED 348
                                      WSNSSRE           S+N +S +D      
Sbjct: 338 ---------------------------WSNSSRETW-------PLSNNCSSDIDTMIRTS 396

Query: 349 KSS--SHERTSD-------GSSLTNLSAGTSPQKPNLEFTLG 381
            +S  SH + S         +         S + P+LEFTLG
Sbjct: 398 STSMISHYQRSSIQNQEQRSNDQAKRCGNLSCENPSLEFTLG 396

[Close]

BLAST of CmaCh16G011840 vs. ExPASy Swiss-Prot
Match: Q9FJV5 (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 5.8e-25
Identity = 70/148 (47.30%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 169 KRSIRSPRMRWTTTLHARFVHVVEFLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 228
           KRSIR+PRMRWT+TLHA FVH V+ LGGHERATPKSVLELM+VKDLTLAHVKSHLQMYRT
Sbjct: 100 KRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 159

Query: 229 VKTTDKAA---AAVASSGNSEVYDQNRSSRDTTTKDTTYENEKS--SRTRLNTPTTDSPR 288
           VK TDK +     V       + D N +       DT   N  S     R +  +T    
Sbjct: 160 VKCTDKGSPGEGKVEKEAEQRIEDNNNNEEADEGTDTNSPNSSSVQKTQRASWSSTKEVS 219

Query: 289 HQLSPSFHQEFRKTVNGEQDHRRTHTDL 312
             +S   +     T + + +  +  T++
Sbjct: 220 RSISTQAYSHLGTTHHTKDNEEKEDTNI 247

[Close]

BLAST of CmaCh16G011840 vs. TAIR 10
Match: AT1G32240.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 211.5 bits (537), Expect = 1.2e-54
Identity = 186/428 (43.46%), Postives = 222/428 (51.87%), Query Frame = 0


Query: 1   MELFGGQPDLSLQIRPPNSKPSSKGSWRTQQPISSIPSHNPLDFLFFNNFPSSSSSSSSS 60
           MELF  QPDLSLQI PPNSKPSS  +W+ ++  +    H  LD  F+     S +SS  S
Sbjct: 1   MELFPAQPDLSLQISPPNSKPSS--TWQRRRSTTDQEDHEELDLGFWRRALDSRTSSLVS 60

Query: 61  SSSSSNFG---PSLSNPNPSHF----LHHH--LLPAATNVGGGGGGGVFHGHPRDLHHQG 120
           +S+S         LS  N SH      HHH  LLP   N         F    +  H QG
Sbjct: 61  NSTSKTINHPFQDLSLSNISHHQQQQQHHHPQLLPNC-NSSNILTSFQFPTQQQQQHLQG 120

Query: 121 L------GFSTPIRGIPVYQNPPS--------------------SSSSSSSYPIFGSGGG 180
                      PIRGIP+Y NPP                      SSS+SS  + G+   
Sbjct: 121 FLAHDLNTHLRPIRGIPLYHNPPPHHHPHRPPPPCFPFDPSSLIPSSSTSSPALTGNNNS 180

Query: 181 GGGGGIQF-NYN------ALRSRLLARFPAKRSIRSPRMRWTTTLHARFVHVVEFLGGHE 240
                +   NY+        R+R + RFPAKRS+R+PRMRWTTTLHARFVH VE LGGHE
Sbjct: 181 FNTSSVSNPNYHNHHHQTLNRARFMPRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHE 240

Query: 241 RATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAAAAVASSGNSEVYDQNRSSRDTT 300
           RATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAA   ASSG S+VY +N SS D  
Sbjct: 241 RATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKAA---ASSGQSDVY-ENGSSGDNN 300

Query: 301 TKDTTYENEKSSR--TRLNTPTTDSPRHQLSPSFHQEFRKTVNGEQDHRRTHTDLPALWS 360
           + D  ++  + SR    L  P   S                 NG             LW+
Sbjct: 301 SDDWMFDMNRKSRDSEELTNPLEKS-----------------NG-------------LWT 360

Query: 361 NSSREALFQGIIPKDSSDNQASQL--DQRYLEDKSSSHERTSDGSSLTNLSAGTSPQKPN 383
           NSS EA   G +     DN A  +   ++ L+ K SS+ER S     ++  +GTSP KPN
Sbjct: 361 NSSGEARLHGKL----IDNVAEIMLPSEKELDGKCSSYERISSEEMSSSSISGTSPFKPN 387

[Close]

BLAST of CmaCh16G011840 vs. TAIR 10
Match: AT4G17695.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 139.4 bits (350), Expect = 5.9e-33
Identity = 144/397 (36.27%), Postives = 176/397 (44.33%), Query Frame = 0


Query: 1   MELFGGQPDLSLQIRPPNSKPSSKGSWRTQQPISSIPSHNPLDFLFFNNFPSSSSSSSSS 60
           MELF  QPDL L+I     +   K S    Q +        L F         S +S   
Sbjct: 1   MELFPSQPDLYLKISRRREEEQEKES----QELQEQEVERRLGF--------QSKASDLD 60

Query: 61  SSSSSNFGPSLSNPNPSHFLHHHLLPAATNVGGGGGGGVFHGHPRDLHHQGLGFSTPIRG 120
           + SS+N             L H L   + N          H    D   + +    PIRG
Sbjct: 61  NKSSNN-------------LIHTLQFTSNNEATKINSNQEHKESLDQDLRSIFMMRPIRG 120

Query: 121 IPVYQNPPSSS---SSSSSYPIFGSGGGG--------GGGGIQFNYNALRSRLL----AR 180
           IP+YQN        SS+S  P F S   G              FN +    R       R
Sbjct: 121 IPLYQNQVLDHYYYSSTSPNPFFFSEVNGQHASRRLITNPNCSFNLHNRHRRQAQPQPPR 180

Query: 181 FPAKRSIRSPRMRWTTTLHARFVHVVEFLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 240
           F AKR +R+PRMRWTTTLHA FVH V+ LGGHERATPKSVLELMDV+DLTLAHVKSHLQM
Sbjct: 181 FTAKRGVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQM 240

Query: 241 YRTVKTTDKAAAAVASSGNSEVYDQNRSSRDTTTKDTTYENEKSSRTRLNTPTTDSPRHQ 300
           YRT+K+T+K                                          PTT S +  
Sbjct: 241 YRTIKSTEK------------------------------------------PTTSSGQSD 300

Query: 301 LSPSFHQEFRKTVNGEQDHRRTHTDLPALWSNSSREALFQGIIPKDSSDNQASQLDQRYL 360
                  E    VN E++ R    +L  LW+NSS EA FQ +  K SS    S  +  + 
Sbjct: 301 C------ENGSQVNSEREAR----NLTGLWNNSSSEARFQ-LKAKASSGVDISSNENEWK 315

Query: 361 EDKSSSHER-TSDGSSLTNLSAGTSP--QKPNLEFTL 380
             +  S+ER +SD SSLT    GT P  + PNL+FTL
Sbjct: 361 NRRCPSNERLSSDSSSLT----GTRPETETPNLDFTL 315

[Close]

BLAST of CmaCh16G011840 vs. TAIR 10
Match: AT5G16560.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 132.9 bits (333), Expect = 5.5e-31
Identity = 103/282 (36.52%), Postives = 142/282 (50.35%), Query Frame = 0


Query: 109 HQGLGFSTPIRGIPVYQNPPSSSSSSSSYPIFGSGGGGGGGGIQFNYNA-LRSRLLARFP 168
           ++ L  S  ++G+P++ +        + Y + GS           +++  +RSR L + P
Sbjct: 158 YRSLQSSPRLKGVPLHHH-----HHHNQYGVVGSSDSSSPHHHNHHHHGMIRSRFLPKMP 217

Query: 169 AKRSIRSPRMRWTTTLHARFVHVVEFLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 228
            KRS+R+PRMRWT++LHARFVH VE LGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR
Sbjct: 218 TKRSMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYR 277

Query: 229 TVKTTDKAAAAVASSGNSEVYDQNRSSRDTTTKDTTYENEKSSRTRLNTPTTDSPRHQLS 288
           TVKTT+K AA+   SG  E+          ++ D   +++ +S  +    ++  PR    
Sbjct: 278 TVKTTNKPAASSDGSGEEEMGINGNEVHHQSSTDQRAQSDDTSLHQETDISSTQPR---- 337

Query: 289 PSFHQEFRKTVNGEQDHRRTHTDLPALWSNSSREALFQGIIPKDSSDNQASQLDQRYLED 348
                                      WSNSSRE           S+N +S +D      
Sbjct: 338 ---------------------------WSNSSRETW-------PLSNNCSSDIDTMIRTS 396

Query: 349 KSS--SHERTSD-------GSSLTNLSAGTSPQKPNLEFTLG 381
            +S  SH + S         +         S + P+LEFTLG
Sbjct: 398 STSMISHYQRSSIQNQEQRSNDQAKRCGNLSCENPSLEFTLG 396

[Close]

BLAST of CmaCh16G011840 vs. TAIR 10
Match: AT5G42630.2 (Homeodomain-like superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 2.8e-27
Identity = 65/104 (62.50%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 169 KRSIRSPRMRWTTTLHARFVHVVEFLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 228
           KRSIR+PRMRWT+TLHA FVH V+ LGGHERATPKSVLELM+VKDLTLAHVKSHLQMYRT
Sbjct: 100 KRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 159

Query: 229 VKTTDKAA---AAVASSGNSEVYDQNRSSRDTTTKDTTYENEKS 270
           VK TDK +     V       + D N +       DT   N  S
Sbjct: 160 VKCTDKGSPGEGKVEKEAEQRIEDNNNNEEADEGTDTNSPNSSS 203

[Close]

BLAST of CmaCh16G011840 vs. TAIR 10
Match: AT5G42630.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 4.1e-26
Identity = 70/148 (47.30%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 169 KRSIRSPRMRWTTTLHARFVHVVEFLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 228
           KRSIR+PRMRWT+TLHA FVH V+ LGGHERATPKSVLELM+VKDLTLAHVKSHLQMYRT
Sbjct: 100 KRSIRAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 159

Query: 229 VKTTDKAA---AAVASSGNSEVYDQNRSSRDTTTKDTTYENEKS--SRTRLNTPTTDSPR 288
           VK TDK +     V       + D N +       DT   N  S     R +  +T    
Sbjct: 160 VKCTDKGSPGEGKVEKEAEQRIEDNNNNEEADEGTDTNSPNSSSVQKTQRASWSSTKEVS 219

Query: 289 HQLSPSFHQEFRKTVNGEQDHRRTHTDL 312
             +S   +     T + + +  +  T++
Sbjct: 220 RSISTQAYSHLGTTHHTKDNEEKEDTNI 247

The following BLAST results are available for this feature:

BLAST of CmaCh16G011840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C616	1.7e-53	43.46	Probable transcription factor KAN2 OS=Arabidopsis thaliana OX=3702 GN=KAN2 PE=2 ...	[more]
Q941I2	8.3e-32	36.27	Probable transcription factor KAN3 OS=Arabidopsis thaliana OX=3702 GN=KAN3 PE=2 ...	[more]
Q0J235	1.9e-31	60.61	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL...	[more]
Q93WJ9	7.8e-30	36.52	Transcription repressor KAN1 OS=Arabidopsis thaliana OX=3702 GN=KAN1 PE=1 SV=1	[more]
Q9FJV5	5.8e-25	47.30	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]

BLAST of CmaCh16G011840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32240.1	1.2e-54	43.46	Homeodomain-like superfamily protein	[more]
AT4G17695.1	5.9e-33	36.27	Homeodomain-like superfamily protein	[more]
AT5G16560.1	5.5e-31	36.52	Homeodomain-like superfamily protein	[more]
AT5G42630.2	2.8e-27	62.50	Homeodomain-like superfamily protein	[more]
AT5G42630.1	4.1e-26	47.30	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 174..231 e-value: 1.9E-25 score: 90.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 240..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 355..378
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 345..383
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 269..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..268
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..38
None	No IPR available	PANTHER	PTHR31496:SF3	TRANSCRIPTION FACTOR KAN2-RELATED	coord: 1..380
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 175..228 e-value: 1.0E-22 score: 78.1
IPR044847	Transcription repressor KANADI	PANTHER	PTHR31496	TRANSCRIPTION FACTOR KAN2-RELATED	coord: 1..380
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 172..228

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G011840.1	CmaCh16G011840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding
molecular_function	GO:0003677	DNA binding