CmaCh16G011760 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G011760
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Syntaxin
Location	Cma_Chr16: 9005154 .. 9009976 (-)
RNA-Seq Expression	CmaCh16G011760
Synteny	CmaCh16G011760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCATCTCTCTCCTCCATCATCGTCTTCCACTCTCTCTAAAAACTTGAATTCATCTCGCCTTTCATTGCGAATTCCTCAAAGGCCAATCTTCAATTGCCCTAATTCGTCCCTTTCCCCATTTGAGGATTCCTCTGATCCTCGATTACAGGAACGTCTTCATCTTTGTCCCGGATCCTCTTTTCCAGGGGAGAATTTGTTCTGTTTTTCTTGAATTTTGCTTTGTTTTCAATCGAGTTCTTCTTGTTGTGCTCTCTTCGGAAATTTAGGATCTCGGCGACATGAGCTTTCAAGATATCGAGGCTGGTCGCCCGTTTGCTTCTTCGAGGAGAGACCTCATCAATGGCAAACAAGATCCCACGCAAGCCGTTGCCTCAGGTATATTTCAGATTAATACTGCCGTTGCTACGTTTCAGAGGCTTGTTAACACCCTAGGTACGCCGAAGGATACGCCTGAGCTACGCGAGAAGCTGTGAGTTCTGTTATTTGATCTGGTTTTTTGGTTTCTTGTTGTTGGTTTGCTGTTAGGGTTCCTGAATTTTGTGTCTCATCGATGATATGCATGACATTTTCAATGGATTGTTGAATTGTGTGAATTGTAGTCTGTTTTTTGGAGTTTCGAATCGCTATTACTTTGAGGAGGATTCAACGTTGCGATTTGCCTCCTGTTGATTGTCCCGTATAAACCTTAGGTTTCTTTTGAATTTTGTCTTGTACGTTATCCTTGCCGTTTGCTTTTCCCTGATGGAGGGGTTATCTTGGAAAAGATTCAGACCGTGGAAAAGATCTGCATGGGGTATATCCAAGTCCTACATTTCTTCGCCATGAAGTTTCTAGAGCTCGTAGTGTTTGTCTGTCCGCTGTTTTTTGGGAGCAGTATTGGAAGGTTAAAGAAACCATATGAGATATCATTGGGTTCACTCGGTTGGGATTTCCATATACGTAACTATTCCATCTACTTCGTCATTTCTCATCAAGAGTATACTCAACACCAGGAGGAACAGAACTTTCTAGGGGACGGGGGTGGGGGTTGAGGGAACCATATTCTCTGCATTTCGTATTCTATAGAACCAAAGGACAATAGGCAACACGTGTTTCTGATGTTTAAAACGAGCTTAATCTTCACTTAGATTTTCCAAAATCGTAAGGATTAATTACTGTACAAATATGATGAAATTCTGCTCATTTAGTTGTAACATACAGTTAACATCATAGTTTTAGTTTGTTTATTTCTGGAATATAAAATGGCATCCAAATACATTGGAGAGAAATTTAATCTAGTATCTCATATTATACTACTCGACACATTTCCTATGATTTCTCTCACTTGGTTGCTGTAGGGACTGTGCATAAAGAACTGATCCCTCTTCATGGTTGCCTTTGCAAATACCACACTAGTACAACTAATAAATGTGTCGTTATCTTGTATGAATAACATCAGTAGGATTTGTCCTTGTAAAAAAAAACACTGCTATACTCCGTTCACTCCAAACAATCTCTTTAACATGACATACAAGTATAGTTATAGATGATCTGTTGCATTTTTTGTCCGAGTATGATGATGAATAAATCCTCCCCATCAATATTGAATTGAAACTGAAATAGATAGATTACAAAACACCTAGGTTAGGATCTCTTAGTAGTTTCATCCTTGGTTTTTGTGTGCCCTTTTTGTACAATTGTCAGGAAGGTGGTTATGCCCATGTATTGTCATAACTTATAAACCTCTAATTTGAAGTAACTATTGACTGTTCAACTGACATGCTTAAATATTCAGTGAGTTATTAAACTTACCTCGACAATTATCTTAGATACACTGCTATTTTATTTGTCTGCAATTTCCATGTTGATATTTGTTCCTATCAGAAAATGTTTTGATCCTTTGTTGATGACCCCCTGCAGGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGATACCTCTGCCAAACTTAAACAAGCCAGTGAAATAGATCATCACGCAGAAGTTAATGTAAGATTCTTTCTTAACACTCCTCTGTTCAATAGTCTCCCCCCAGCTTCTTTGTGTTAAGTGTTAGCATGGCGAGTAAGTAATCTCCAAAAATCTCCTCTCACGACTATTATGACTTGTTAGCATGATTAGGAGATTTAACTTTTCTGATTTGAATGCATTTTGGATTTGGTTAGCATAAAATTATGAATTGGCACTCTATGATGGCAGGTTGTATTATCTAGTTTCCACCACTATCTATCATTTCACTTACACAGTTTTATATAAATTGATATATTGGTCATTGTTGTAGTCTGAATACCCATCTGGAAAATTGTGGGTTGTTTACTGGGATCCTGATTCTACAAACTACTGTCAGTGAGATGGTGAGAACGTGTTGAGCTTGGATGTCAAATCCTACTTGCTTGGTAGGAGCAAAATCTCTCTTTATTGTGGGAGAATTGGAATAATTTTCATGCTGAACCATTAACGAGGATGGAGTATGAATATATGAGTTAGTGCATGAAGTATATTAGCTACCTACGCTAGTAACTTGAAAATTATTCCTCTCCTACTTTCTCAAACAATGTGGTAATTCTGCAGGCCAGCAAGAAAATTGCAGATGCTAAACTTGCAAAAGATTTTCAAGCAGTGTTGAAAGAATTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACAGCATATACACCTTTTGTTCCCCAGACTGTTCTACCTTCTAGGTATGTCAAGTTTATTATATAAACACAGCTAACAAACGTTGGTTATTTTCATGGAGTGTTTGTTGATTACAAACTACATTGGATTTACTTGAAAAAATTGATTTCCCTCGGTTCTGGTCTATACAGCTACACAGCAGGCGAATCAGATGCAAGCTCGGAAAAAAATTTTGAACAGCGTGCTCTCCTTGTGGAATCCAGGAGGTAACAGATTTTTTCTTTGCATTTTGTTGCTAGGCGGCTGATTATTTGGGTTAGATTTAGAATTTCATAAAGTAGGAATGTTTATGCAGTTGAATTTATGTTTCAAATACTGTGCACTGTGCACAGATGAAATGTTCGACCCGTATATGCAAGAACATGATTTCGTATAAAAACGTAGTGCTAAAAACTCTTTATATGAGCTTAAATTTGTCTTCCTTTTAGGGGTTGTTTCTTCAGTAGTGTTATTTTGTTGCAAAAAGCGAAGTATTGCCAGAATTAATAGCCAAGGAATAAACTAGCAGTTTTCTCCTTCCAAATCATGAATTCTAAGGCCTGTCTAGGTTTCACAGGATGTGCTTTCCTGCATATTCTTTCTACCATGCTACCTACAAATTTTATTTAAAATCTGCTCCCTCTTCCCCACGTTGCAGCTTGATTACAATTAGGCAGGTACATGCACATCTTACTAACTTGATTGAATGATTTGTCTAGACAAGAGGTCTTGCTGTTGGACAATGAAATCGCCTTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGTATTCATGAAATCCAGCACCAAATTGGAGAAGTGAATGAAATTTTTAAAGATCTTGCAGTTTTAGTCCATGAACAGGGAGCCATGATTGGTAAGTCACTTCAGTTTATAAAGTTGTAGATATATGTATGCCTCAAGTTATTCATGTATATATCACCATGGTGTAGATGATATTGGATCCAACATAGAGGGCTCCCATGCTGCAACATCACAGGGAACAACTCAGCTGGTAAAAGCTTCAAAGACGCAAAGATCAAATTCATCTCTGGTGAGCCCTTATGTTTCCTTATATTCATCATTAACTTTTTTTATATCAATTAGACCATGAGTTGCAGCAGGTTGTGTGCAATACTTCATTTAGCACTTTTGCATTGTGACTGTTAGCGGATAGTACAGTCTTCATTTAGTTTGTTATGTTCCATTTGGAAGTAAAACTCATATGAAGGTAAAACTTGCATACCTAACATCCATGCATGATCATGAATAGAATATTGAACTTGTTCTTCTTTTCTCATTTCATTCTAAACTGGTTTTAAACACTCCTAAATCAGTTGGCACTGTGGTATTTGTACTTTCATGCCTATGAACTACAAACATGGTAACTCTGTGGGTGTTTCATGTGGTGTTCATACATCTGATTCTTTGTTTTGATTTGTTTTTTTCTTGATTGGCAGGCTTGCTTACTTTTGGTGATATTTGGTATTATCCTCCTCATTGTGATCATAATAGTTGTTGCTTAAATGAAAGAAGAAGTTGTGCATTGACACAGGAAACACTTGCTGCTGTTGTAGCAAGATGAGTGTCCTGTTAGTTTCTTTTGATAACTGTACTTTGTGGTCGTGGATCATCCTGCCTTCTGGGAAAGGGTTGTGGAGGGGCTCTAATACTCTATATCCTCAGTCAGGTCGGCCATCCTCTTCTCTTCCATTTGGAAATGTTATAACCTGTTTGTGTGAAGGTGTGTGGAACCTGTTTATTTTATTTTTGTTCTTATTTAATTATATTGATAAATTATTTTTCTTGTCCTCACTTGGCTCCTCTGTACTCTGTTGCACACAGAAGCATTTACCCCATTTGCATGGTGGCTGGTAAAATGCGAGGGAGAGAGACAGATCTCTCTCTCACTCTAGGGTTGGGATATGGTTTGTAATAAATAAAAGGATTGGTCGTCTTGTTGGTGCTTTTATGGATTTACCAGACTGTTAACTTAGTGACTACTGAATCATGATGGTAAAACTGCCTGCTGTTCTTGTGTTTTGGGCTAAAAGTGAATCCTTTTCTTTATGATTGGTTTTGTTCCATCTGAAAATTTTATTGGCCTCACAAAAGAATTGTTTGCTTTTGG

mRNA sequence

ATTCCATCTCTCTCCTCCATCATCGTCTTCCACTCTCTCTAAAAACTTGAATTCATCTCGCCTTTCATTGCGAATTCCTCAAAGGCCAATCTTCAATTGCCCTAATTCGTCCCTTTCCCCATTTGAGGATTCCTCTGATCCTCGATTACAGGAACGTCTTCATCTTTGTCCCGGATCCTCTTTTCCAGGGGAGAATTTGTTCTGTTTTTCTTGAATTTTGCTTTGTTTTCAATCGAGTTCTTCTTGTTGTGCTCTCTTCGGAAATTTAGGATCTCGGCGACATGAGCTTTCAAGATATCGAGGCTGGTCGCCCGTTTGCTTCTTCGAGGAGAGACCTCATCAATGGCAAACAAGATCCCACGCAAGCCGTTGCCTCAGGTATATTTCAGATTAATACTGCCGTTGCTACGTTTCAGAGGCTTGTTAACACCCTAGGTACGCCGAAGGATACGCCTGAGCTACGCGAGAAGCTGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGATACCTCTGCCAAACTTAAACAAGCCAGTGAAATAGATCATCACGCAGAAGTTAATGCCAGCAAGAAAATTGCAGATGCTAAACTTGCAAAAGATTTTCAAGCAGTGTTGAAAGAATTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACAGCATATACACCTTTTGTTCCCCAGACTGTTCTACCTTCTAGCTACACAGCAGGCGAATCAGATGCAAGCTCGGAAAAAAATTTTGAACAGCGTGCTCTCCTTGTGGAATCCAGGAGACAAGAGGTCTTGCTGTTGGACAATGAAATCGCCTTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGTATTCATGAAATCCAGCACCAAATTGGAGAAGTGAATGAAATTTTTAAAGATCTTGCAGTTTTAGTCCATGAACAGGGAGCCATGATTGATGATATTGGATCCAACATAGAGGGCTCCCATGCTGCAACATCACAGGGAACAACTCAGCTGGTAAAAGCTTCAAAGACGCAAAGATCAAATTCATCTCTGGCTTGCTTACTTTTGGTGATATTTGGTATTATCCTCCTCATTGTGATCATAATAGTTGTTGCTTAAATGAAAGAAGAAGTTGTGCATTGACACAGGAAACACTTGCTGCTGTTGTAGCAAGATGAGTGTCCTGTTAGTTTCTTTTGATAACTGTACTTTGTGGTCGTGGATCATCCTGCCTTCTGGGAAAGGGTTGTGGAGGGGCTCTAATACTCTATATCCTCAGTCAGGTCGGCCATCCTCTTCTCTTCCATTTGGAAATGTTATAACCTGTTTGTGTGAAGGTGTGTGGAACCTGTTTATTTTATTTTTGTTCTTATTTAATTATATTGATAAATTATTTTTCTTGTCCTCACTTGGCTCCTCTGTACTCTGTTGCACACAGAAGCATTTACCCCATTTGCATGGTGGCTGGTAAAATGCGAGGGAGAGAGACAGATCTCTCTCTCACTCTAGGGTTGGGATATGGTTTGTAATAAATAAAAGGATTGGTCGTCTTGTTGGTGCTTTTATGGATTTACCAGACTGTTAACTTAGTGACTACTGAATCATGATGGTAAAACTGCCTGCTGTTCTTGTGTTTTGGGCTAAAAGTGAATCCTTTTCTTTATGATTGGTTTTGTTCCATCTGAAAATTTTATTGGCCTCACAAAAGAATTGTTTGCTTTTGG

Coding sequence (CDS)

ATGAGCTTTCAAGATATCGAGGCTGGTCGCCCGTTTGCTTCTTCGAGGAGAGACCTCATCAATGGCAAACAAGATCCCACGCAAGCCGTTGCCTCAGGTATATTTCAGATTAATACTGCCGTTGCTACGTTTCAGAGGCTTGTTAACACCCTAGGTACGCCGAAGGATACGCCTGAGCTACGCGAGAAGCTGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGATACCTCTGCCAAACTTAAACAAGCCAGTGAAATAGATCATCACGCAGAAGTTAATGCCAGCAAGAAAATTGCAGATGCTAAACTTGCAAAAGATTTTCAAGCAGTGTTGAAAGAATTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACAGCATATACACCTTTTGTTCCCCAGACTGTTCTACCTTCTAGCTACACAGCAGGCGAATCAGATGCAAGCTCGGAAAAAAATTTTGAACAGCGTGCTCTCCTTGTGGAATCCAGGAGACAAGAGGTCTTGCTGTTGGACAATGAAATCGCCTTCAATGAGGCAATAATTGAGGAAAGAGAGCAAGGTATTCATGAAATCCAGCACCAAATTGGAGAAGTGAATGAAATTTTTAAAGATCTTGCAGTTTTAGTCCATGAACAGGGAGCCATGATTGATGATATTGGATCCAACATAGAGGGCTCCCATGCTGCAACATCACAGGGAACAACTCAGCTGGTAAAAGCTTCAAAGACGCAAAGATCAAATTCATCTCTGGCTTGCTTACTTTTGGTGATATTTGGTATTATCCTCCTCATTGTGATCATAATAGTTGTTGCTTAA

Protein sequence

MSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQTVLPSSYTAGESDASSEKNFEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQHQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGSHAATSQGTTQLVKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA

Homology

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BLAST of CmaCh16G011760 vs. ExPASy Swiss-Prot
Match: P93654 (Syntaxin-22 OS=Arabidopsis thaliana OX=3702 GN=SYP22 PE=1 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 2.0e-104
Identity = 213/274 (77.74%), Postives = 238/274 (86.86%), Query Frame = 0


Query: 1   MSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPEL 60
           MSFQD+E+GR    S R    G+QD TQAVASGIFQINT V+TFQRLVNTLGTPKDTPEL
Sbjct: 1   MSFQDLESGR--GRSTRKFNGGRQDSTQAVASGIFQINTGVSTFQRLVNTLGTPKDTPEL 60

Query: 61  REKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQ 120
           REKLHKTRLHIGQLVKDTSAKLK+ASE DH + VN SKKIADAKLA+DFQAVLKEFQKAQ
Sbjct: 61  REKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLKEFQKAQ 120

Query: 121 RLAAERETAYTPFVPQTVLPSSYTAGESDASSEKNFEQRALLVESRRQEVLLLDNEIAFN 180
           + AAERET YTPFVPQ+ LPSSYTAGE D    K  EQRA L ES+RQE++LLDNEIAFN
Sbjct: 121 QTAAERETTYTPFVPQSALPSSYTAGEVD----KVPEQRAQLQESKRQELVLLDNEIAFN 180

Query: 181 EAIIEEREQGIHEIQHQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGSHAATSQGTTQL 240
           EA+IEEREQGI EI  QIGEVNEIFKDLAVLV++QG MIDDIG++I+ S AATSQG +QL
Sbjct: 181 EAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATSQGKSQL 240

Query: 241 VKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA 275
           V+A+KTQ+SNSSL CLLLVIFGI+LLIVII++ A
Sbjct: 241 VQAAKTQKSNSSLTCLLLVIFGIVLLIVIIVLAA 268

[Close]

BLAST of CmaCh16G011760 vs. ExPASy Swiss-Prot
Match: O04378 (Syntaxin-23 OS=Arabidopsis thaliana OX=3702 GN=SYP23 PE=1 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.9e-91
Identity = 186/247 (75.30%), Postives = 210/247 (85.02%), Query Frame = 0


Query: 1   MSFQDIEA--GRPFASSRRDLING---KQDPTQAVASGIFQINTAVATFQRLVNTLGTPK 60
           MSFQD+EA  GR  ASSR   ING   +QD TQ VASGIFQINT+V+TF RLVNTLGTPK
Sbjct: 1   MSFQDLEAGRGRSLASSRN--INGGGSRQDTTQDVASGIFQINTSVSTFHRLVNTLGTPK 60

Query: 61  DTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKE 120
           DTPELREKLHKTRL+IGQLVKDTSAKLK+ASE DH   VN  KKI DAKLAKDFQAVLKE
Sbjct: 61  DTPELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQAVLKE 120

Query: 121 FQKAQRLAAERETAYTPFVPQTVLPSSYTAGESDASSEKNFEQRALLVESRRQEVLLLDN 180
           FQKAQRLAAERET Y P V +  LPSSYT+ E D + +K+ EQRALLVES+RQE++LLDN
Sbjct: 121 FQKAQRLAAERETVYAPLVHKPSLPSSYTSSEIDVNGDKHPEQRALLVESKRQELVLLDN 180

Query: 181 EIAFNEAIIEEREQGIHEIQHQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGSHAATSQ 240
           EIAFNEA+IEEREQGI EIQ QIGEV+EIFKDLAVLVH+QG MIDDIG++I+ S+AAT+Q
Sbjct: 181 EIAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHIDNSYAATAQ 240

Query: 241 GTTQLVK 243
           G + LV+
Sbjct: 241 GKSHLVR 245

[Close]

BLAST of CmaCh16G011760 vs. ExPASy Swiss-Prot
Match: Q39233 (Syntaxin-21 OS=Arabidopsis thaliana OX=3702 GN=SYP21 PE=1 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 5.1e-84
Identity = 178/279 (63.80%), Postives = 221/279 (79.21%), Query Frame = 0


Query: 1   MSFQDIEAG------RPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTP 60
           MSFQD+EAG        F   R+   + + DP+Q VA+GIF+I+TAV +F RLVN++GTP
Sbjct: 1   MSFQDLEAGTRSPAPNRFTGGRQQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNSIGTP 60

Query: 61  KDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLK 120
           KDT ELR+KL KTRL I +LVK+TSAKLK+ASE D H   +  KKIADAKLAKDFQ+VLK
Sbjct: 61  KDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQSVLK 120

Query: 121 EFQKAQRLAAERETAYTPFVPQTVLPSSYTAGESDASSEKNFEQRALLVESRRQEVLLLD 180
           EFQKAQRLAAERE  YTP V + + P+SY A E D  S +  +Q+ALL++SRRQEV+ LD
Sbjct: 121 EFQKAQRLAAEREITYTPVVTKEI-PTSYNAPELDTESLRISQQQALLLQSRRQEVVFLD 180

Query: 181 NEIAFNEAIIEEREQGIHEIQHQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGSHAATS 240
           NEI FNEAIIEEREQGI EI+ QI +VN +FKDLA++V+ QG ++DDI SN++ SHAAT+
Sbjct: 181 NEITFNEAIIEEREQGIREIEDQIRDVNGMFKDLALMVNHQGNIVDDISSNLDNSHAATT 240

Query: 241 QGTTQLVKASKTQRSNSSLACLLLVIFGIILLIVIIIVV 274
           Q T QL KA+KTQRSNSSL CLL++IFGI+LLIVII+V+
Sbjct: 241 QATVQLRKAAKTQRSNSSLTCLLILIFGIVLLIVIIVVL 278

[Close]

BLAST of CmaCh16G011760 vs. ExPASy Swiss-Prot
Match: Q9C615 (Putative syntaxin-24 OS=Arabidopsis thaliana OX=3702 GN=SYP24 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.7e-50
Identity = 119/199 (59.80%), Postives = 147/199 (73.87%), Query Frame = 0


Query: 65  HKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAA 124
           HK  L IGQLVKDTSA L++ASE DH  +V  SKKIADAKLAKDF+A LKEFQKAQ +  
Sbjct: 154 HKKMLLIGQLVKDTSANLREASETDHRRDVAQSKKIADAKLAKDFEAALKEFQKAQHITV 213

Query: 125 ERETAYTPFVPQTVLPSSYTAGESDASSEKNFEQRALLVESRRQEVLLLDNEIAFNEAII 184
           ERET+Y PF P+     S+++ E D   +++ EQR +L+ESRRQE++LLDNEI+ NEA I
Sbjct: 214 ERETSYIPFDPK----GSFSSSEVDIGYDRSQEQR-VLMESRRQEIVLLDNEISLNEARI 273

Query: 185 EEREQGIHEIQHQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGSHAATSQGTTQLVKAS 244
           E REQGI E++HQI EV E+FKDLAV+V  QG  IDDI   I+   +A +QG + LVKAS
Sbjct: 274 EAREQGIQEVKHQISEVMEMFKDLAVMVDHQGT-IDDIDEKIDNLRSAAAQGKSHLVKAS 333

Query: 245 KTQRSNSSL--ACLLLVIF 262
            TQ SNSSL  +C LL+ F
Sbjct: 334 NTQGSNSSLLFSCSLLLFF 346

[Close]

BLAST of CmaCh16G011760 vs. ExPASy Swiss-Prot
Match: O70257 (Syntaxin-7 OS=Rattus norvegicus OX=10116 GN=Stx7 PE=1 SV=4)

HSP 1 Score: 126.3 bits (316), Expect = 5.2e-28
Identity = 89/248 (35.89%), Postives = 139/248 (56.05%), Query Frame = 0


Query: 28  QAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASE 87
           Q ++S I +I    A  QR +N LGTP+DTPELR++L + + +  QL K+T   +K+   
Sbjct: 16  QRISSNIQKITQCSAEIQRTLNQLGTPQDTPELRQQLQQEQQYTNQLAKETDKYIKEFGF 75

Query: 88  IDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQTVLPSSYTAG- 147
           +         +KI   +L  +F   L  FQK QR AAERE     FV +    S  + G 
Sbjct: 76  LPTTPSEQRQRKIQKDRLVAEFTTALTNFQKVQRQAAERE---KEFVARVRASSRVSGGF 135

Query: 148 ESDASSEKNFEQRALLVESRRQ-EVLLLDNEIAFNE-AIIEEREQGIHEIQHQIGEVNEI 207
             D+S EKNF    +  ES+ Q +V + D EI  ++  +I ERE  I +++  I ++NEI
Sbjct: 136 PEDSSKEKNF----VSWESQTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEI 195

Query: 208 FKDLAVLVHEQGAMIDDIGSNIEGSHAATSQGTTQLVKASKTQRSNSSLACLLLVIFGII 267
           FKDL +++HEQG +ID I +N+E +     Q   QL +A+  QR +    C++++I  + 
Sbjct: 196 FKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAANYQRKSRKTLCIIILILVVG 255

Query: 268 LLIVIIIV 273
           ++I+  IV
Sbjct: 256 IVIIFFIV 256

[Close]

BLAST of CmaCh16G011760 vs. TAIR 10
Match: AT5G46860.1 (Syntaxin/t-SNARE family protein )

HSP 1 Score: 380.2 bits (975), Expect = 1.4e-105
Identity = 213/274 (77.74%), Postives = 238/274 (86.86%), Query Frame = 0


Query: 1   MSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPEL 60
           MSFQD+E+GR    S R    G+QD TQAVASGIFQINT V+TFQRLVNTLGTPKDTPEL
Sbjct: 1   MSFQDLESGR--GRSTRKFNGGRQDSTQAVASGIFQINTGVSTFQRLVNTLGTPKDTPEL 60

Query: 61  REKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQ 120
           REKLHKTRLHIGQLVKDTSAKLK+ASE DH + VN SKKIADAKLA+DFQAVLKEFQKAQ
Sbjct: 61  REKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLKEFQKAQ 120

Query: 121 RLAAERETAYTPFVPQTVLPSSYTAGESDASSEKNFEQRALLVESRRQEVLLLDNEIAFN 180
           + AAERET YTPFVPQ+ LPSSYTAGE D    K  EQRA L ES+RQE++LLDNEIAFN
Sbjct: 121 QTAAERETTYTPFVPQSALPSSYTAGEVD----KVPEQRAQLQESKRQELVLLDNEIAFN 180

Query: 181 EAIIEEREQGIHEIQHQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGSHAATSQGTTQL 240
           EA+IEEREQGI EI  QIGEVNEIFKDLAVLV++QG MIDDIG++I+ S AATSQG +QL
Sbjct: 181 EAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATSQGKSQL 240

Query: 241 VKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA 275
           V+A+KTQ+SNSSL CLLLVIFGI+LLIVII++ A
Sbjct: 241 VQAAKTQKSNSSLTCLLLVIFGIVLLIVIIVLAA 268

[Close]

BLAST of CmaCh16G011760 vs. TAIR 10
Match: AT4G17730.1 (syntaxin of plants 23 )

HSP 1 Score: 337.0 bits (863), Expect = 1.4e-92
Identity = 186/247 (75.30%), Postives = 210/247 (85.02%), Query Frame = 0


Query: 1   MSFQDIEA--GRPFASSRRDLING---KQDPTQAVASGIFQINTAVATFQRLVNTLGTPK 60
           MSFQD+EA  GR  ASSR   ING   +QD TQ VASGIFQINT+V+TF RLVNTLGTPK
Sbjct: 1   MSFQDLEAGRGRSLASSRN--INGGGSRQDTTQDVASGIFQINTSVSTFHRLVNTLGTPK 60

Query: 61  DTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKE 120
           DTPELREKLHKTRL+IGQLVKDTSAKLK+ASE DH   VN  KKI DAKLAKDFQAVLKE
Sbjct: 61  DTPELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQAVLKE 120

Query: 121 FQKAQRLAAERETAYTPFVPQTVLPSSYTAGESDASSEKNFEQRALLVESRRQEVLLLDN 180
           FQKAQRLAAERET Y P V +  LPSSYT+ E D + +K+ EQRALLVES+RQE++LLDN
Sbjct: 121 FQKAQRLAAERETVYAPLVHKPSLPSSYTSSEIDVNGDKHPEQRALLVESKRQELVLLDN 180

Query: 181 EIAFNEAIIEEREQGIHEIQHQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGSHAATSQ 240
           EIAFNEA+IEEREQGI EIQ QIGEV+EIFKDLAVLVH+QG MIDDIG++I+ S+AAT+Q
Sbjct: 181 EIAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHIDNSYAATAQ 240

Query: 241 GTTQLVK 243
           G + LV+
Sbjct: 241 GKSHLVR 245

[Close]

BLAST of CmaCh16G011760 vs. TAIR 10
Match: AT4G17730.2 (syntaxin of plants 23 )

HSP 1 Score: 337.0 bits (863), Expect = 1.4e-92
Identity = 189/262 (72.14%), Postives = 216/262 (82.44%), Query Frame = 0


Query: 1   MSFQDIEA--GRPFASSRRDLING---KQDPTQAVASGIFQINTAVATFQRLVNTLGTPK 60
           MSFQD+EA  GR  ASSR   ING   +QD TQ VASGIFQINT+V+TF RLVNTLGTPK
Sbjct: 1   MSFQDLEAGRGRSLASSRN--INGGGSRQDTTQDVASGIFQINTSVSTFHRLVNTLGTPK 60

Query: 61  DTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKE 120
           DTPELREKLHKTRL+IGQLVKDTSAKLK+ASE DH   VN  KKI DAKLAKDFQAVLKE
Sbjct: 61  DTPELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQAVLKE 120

Query: 121 FQKAQRLAAERETAYTPFVPQTVLPSSYTAGESDASSEKNFEQRALLVESRRQEVLLLDN 180
           FQKAQRLAAERET Y P V +  LPSSYT+ E D + +K+ EQRALLVES+RQE++LLDN
Sbjct: 121 FQKAQRLAAERETVYAPLVHKPSLPSSYTSSEIDVNGDKHPEQRALLVESKRQELVLLDN 180

Query: 181 EIAFNEAIIEEREQGIHEIQHQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGSHAATSQ 240
           EIAFNEA+IEEREQGI EIQ QIGEV+EIFKDLAVLVH+QG MIDDIG++I+ S+AAT+Q
Sbjct: 181 EIAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHIDNSYAATAQ 240

Query: 241 GTTQLVKASKTQRSNSSLACLL 258
           G + LV+  +    +  L CL+
Sbjct: 241 GKSHLVRHQR--HKDQILLCLI 258

[Close]

BLAST of CmaCh16G011760 vs. TAIR 10
Match: AT5G16830.1 (syntaxin of plants 21 )

HSP 1 Score: 312.4 bits (799), Expect = 3.6e-85
Identity = 178/279 (63.80%), Postives = 221/279 (79.21%), Query Frame = 0


Query: 1   MSFQDIEAG------RPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTP 60
           MSFQD+EAG        F   R+   + + DP+Q VA+GIF+I+TAV +F RLVN++GTP
Sbjct: 1   MSFQDLEAGTRSPAPNRFTGGRQQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNSIGTP 60

Query: 61  KDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLK 120
           KDT ELR+KL KTRL I +LVK+TSAKLK+ASE D H   +  KKIADAKLAKDFQ+VLK
Sbjct: 61  KDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQSVLK 120

Query: 121 EFQKAQRLAAERETAYTPFVPQTVLPSSYTAGESDASSEKNFEQRALLVESRRQEVLLLD 180
           EFQKAQRLAAERE  YTP V + + P+SY A E D  S +  +Q+ALL++SRRQEV+ LD
Sbjct: 121 EFQKAQRLAAEREITYTPVVTKEI-PTSYNAPELDTESLRISQQQALLLQSRRQEVVFLD 180

Query: 181 NEIAFNEAIIEEREQGIHEIQHQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGSHAATS 240
           NEI FNEAIIEEREQGI EI+ QI +VN +FKDLA++V+ QG ++DDI SN++ SHAAT+
Sbjct: 181 NEITFNEAIIEEREQGIREIEDQIRDVNGMFKDLALMVNHQGNIVDDISSNLDNSHAATT 240

Query: 241 QGTTQLVKASKTQRSNSSLACLLLVIFGIILLIVIIIVV 274
           Q T QL KA+KTQRSNSSL CLL++IFGI+LLIVII+V+
Sbjct: 241 QATVQLRKAAKTQRSNSSLTCLLILIFGIVLLIVIIVVL 278

[Close]

BLAST of CmaCh16G011760 vs. TAIR 10
Match: AT1G32270.1 (syntaxin, putative )

HSP 1 Score: 199.9 bits (507), Expect = 2.6e-51
Identity = 119/199 (59.80%), Postives = 147/199 (73.87%), Query Frame = 0


Query: 65  HKTRLHIGQLVKDTSAKLKQASEIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAA 124
           HK  L IGQLVKDTSA L++ASE DH  +V  SKKIADAKLAKDF+A LKEFQKAQ +  
Sbjct: 154 HKKMLLIGQLVKDTSANLREASETDHRRDVAQSKKIADAKLAKDFEAALKEFQKAQHITV 213

Query: 125 ERETAYTPFVPQTVLPSSYTAGESDASSEKNFEQRALLVESRRQEVLLLDNEIAFNEAII 184
           ERET+Y PF P+     S+++ E D   +++ EQR +L+ESRRQE++LLDNEI+ NEA I
Sbjct: 214 ERETSYIPFDPK----GSFSSSEVDIGYDRSQEQR-VLMESRRQEIVLLDNEISLNEARI 273

Query: 185 EEREQGIHEIQHQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEGSHAATSQGTTQLVKAS 244
           E REQGI E++HQI EV E+FKDLAV+V  QG  IDDI   I+   +A +QG + LVKAS
Sbjct: 274 EAREQGIQEVKHQISEVMEMFKDLAVMVDHQGT-IDDIDEKIDNLRSAAAQGKSHLVKAS 333

Query: 245 KTQRSNSSL--ACLLLVIF 262
            TQ SNSSL  +C LL+ F
Sbjct: 334 NTQGSNSSLLFSCSLLLFF 346

The following BLAST results are available for this feature:

BLAST of CmaCh16G011760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93654	2.0e-104	77.74	Syntaxin-22 OS=Arabidopsis thaliana OX=3702 GN=SYP22 PE=1 SV=1	[more]
O04378	1.9e-91	75.30	Syntaxin-23 OS=Arabidopsis thaliana OX=3702 GN=SYP23 PE=1 SV=1	[more]
Q39233	5.1e-84	63.80	Syntaxin-21 OS=Arabidopsis thaliana OX=3702 GN=SYP21 PE=1 SV=1	[more]
Q9C615	3.7e-50	59.80	Putative syntaxin-24 OS=Arabidopsis thaliana OX=3702 GN=SYP24 PE=3 SV=1	[more]
O70257	5.2e-28	35.89	Syntaxin-7 OS=Rattus norvegicus OX=10116 GN=Stx7 PE=1 SV=4	[more]

BLAST of CmaCh16G011760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46860.1	1.4e-105	77.74	Syntaxin/t-SNARE family protein	[more]
AT4G17730.1	1.4e-92	75.30	syntaxin of plants 23	[more]
AT4G17730.2	1.4e-92	72.14	syntaxin of plants 23	[more]
AT5G16830.1	3.6e-85	63.80	syntaxin of plants 21	[more]
AT1G32270.1	2.6e-51	59.80	syntaxin, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000727	Target SNARE coiled-coil homology domain	SMART	SM00397	tSNARE_6	coord: 176..243 e-value: 3.8E-16 score: 69.6
IPR000727	Target SNARE coiled-coil homology domain	PFAM	PF05739	SNARE	coord: 218..269 e-value: 5.0E-15 score: 55.2
IPR000727	Target SNARE coiled-coil homology domain	PROSITE	PS50192	T_SNARE	coord: 181..243 score: 17.049351
IPR006011	Syntaxin, N-terminal domain	SMART	SM00503	SynN_4	coord: 16..128 e-value: 3.1E-25 score: 99.8
IPR006011	Syntaxin, N-terminal domain	PFAM	PF14523	Syntaxin_2	coord: 31..130 e-value: 8.7E-30 score: 103.1
IPR006011	Syntaxin, N-terminal domain	CDD	cd00179	SynN	coord: 24..160 e-value: 1.6595E-27 score: 101.977
None	No IPR available	GENE3D	1.20.5.110		coord: 174..274 e-value: 1.6E-27 score: 97.3
None	No IPR available	GENE3D	1.20.58.70		coord: 21..134 e-value: 1.3E-37 score: 130.3
None	No IPR available	PANTHER	PTHR19957:SF302	SYNTAXIN OF PLANTS PROTEIN	coord: 5..272
None	No IPR available	PANTHER	PTHR19957	SYNTAXIN	coord: 5..272
None	No IPR available	CDD	cd15840	SNARE_Qa	coord: 184..242 e-value: 1.83597E-22 score: 85.6432
IPR006012	Syntaxin/epimorphin, conserved site	PROSITE	PS00914	SYNTAXIN	coord: 187..226
IPR010989	SNARE	SUPERFAMILY	47661	t-snare proteins	coord: 24..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G011760.1	CmaCh16G011760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0048278	vesicle docking
biological_process	GO:0006906	vesicle fusion
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031201	SNARE complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0005484	SNAP receptor activity
molecular_function	GO:0000149	SNARE binding