CmaCh16G011700 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G011700
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein TORNADO 2-like
Location	Cma_Chr16: 8966707 .. 8967837 (-)
RNA-Seq Expression	CmaCh16G011700
Synteny	CmaCh16G011700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTTTAAAAAACACCAACCTCCCTTCACAAAACATCACCAACCAATAACCTCATCACAATGGCATTGAGCAACAATGTCATTGCAGCCATAAACTTCATCGCCTTGCTGCTCTCGATCCCCATCATCGGTGCCGGGATCTGGATCGCAACCCAAGCTGACAACGCCTGTGTGCAACTTTTGCAATGGCCCGTCATCGTTCTCGGCATCGTGATCTTTCTCGTGGCATTGACGGGTTTCATTGGAGCCTTTTGGAGAATCTCAGGGCTTCTAATGTTCTACCTCATTGCCATGCTTGTTCTCATAATCCTACTTGGTAGCTTGGTTCTCTTTGTGTTCTCCGTCACTATGAGAGGTTCGGGTCATACCGAACCAAGCCGAGCTTACTTGGAGTATCACCTCGATGACTTCTCGCTCTGGCTCCAAAGAAGGGTTCGAAGCTCTCATAAATGGGAGAGAATTCGAACTTGTCTTAGTTCTACAACTACATGTGCCGAGTTGAACCAAAACTATAGGTTACCTCAAGATTTCTTCAATGCCCATATCAGCCCTCTCCAGGTAAAATCTTGATTTTCTCGTGCTTAAAAATATTTTGTTTTTCAAGTCGGCCATGAGTCGATAGATTCTAATGTATTTAATATTTTCTACGTATTGTTTTACTAGTCGGGGTGTTGCAAGCCACCGACAGATTGTGGGTTCACCTACGTAAACCCGACGTACTGGATTAGTCCGATAAGCAACGGAGCGAGCGTGGATTGCTCGAAATGGAGCAACGAGCAGACTGAGCTATGCTACGGGTGTGATTCATGTAAGGCAGGGTTGCTAGCTAACCTCAAGGAAGAATGGAGAAATGCTGACCTAATTCTGCTGATTGCACTTATAGGTCTTGTTTTTGTGTATTTGATGGCATTTTTGGCTTTAAAAAATGCCAAATCTGAGAACCTTTTCCGCAGACACAAGCAAGGTTATGTCTAACACACTCAAATAATCAACAAAAACATAACTTTTAACCTTATTGCTTTCTTTTCGGGTTTGTAGAAATATTGACATTGAAACGATTATTAAAAATATGTACGACTATCGGGATGTATTATTTCTCATTTGAAAATATATGTTAAATTTCATTTTTTA

mRNA sequence

TTCCTTTAAAAAACACCAACCTCCCTTCACAAAACATCACCAACCAATAACCTCATCACAATGGCATTGAGCAACAATGTCATTGCAGCCATAAACTTCATCGCCTTGCTGCTCTCGATCCCCATCATCGGTGCCGGGATCTGGATCGCAACCCAAGCTGACAACGCCTGTGTGCAACTTTTGCAATGGCCCGTCATCGTTCTCGGCATCGTGATCTTTCTCGTGGCATTGACGGGTTTCATTGGAGCCTTTTGGAGAATCTCAGGGCTTCTAATGTTCTACCTCATTGCCATGCTTGTTCTCATAATCCTACTTGGTAGCTTGGTTCTCTTTGTGTTCTCCGTCACTATGAGAGGTTCGGGTCATACCGAACCAAGCCGAGCTTACTTGGAGTATCACCTCGATGACTTCTCGCTCTGGCTCCAAAGAAGGGTTCGAAGCTCTCATAAATGGGAGAGAATTCGAACTTGTCTTAGTTCTACAACTACATGTGCCGAGTTGAACCAAAACTATAGGTTACCTCAAGATTTCTTCAATGCCCATATCAGCCCTCTCCAGTCGGGGTGTTGCAAGCCACCGACAGATTGTGGGTTCACCTACGTAAACCCGACGTACTGGATTAGTCCGATAAGCAACGGAGCGAGCGTGGATTGCTCGAAATGGAGCAACGAGCAGACTGAGCTATGCTACGGGTGTGATTCATGTAAGGCAGGGTTGCTAGCTAACCTCAAGGAAGAATGGAGAAATGCTGACCTAATTCTGCTGATTGCACTTATAGGTCTTGTTTTTGTGTATTTGATGGCATTTTTGGCTTTAAAAAATGCCAAATCTGAGAACCTTTTCCGCAGACACAAGCAAGGTTATGTCTAACACACTCAAATAATCAACAAAAACATAACTTTTAACCTTATTGCTTTCTTTTCGGGTTTGTAGAAATATTGACATTGAAACGATTATTAAAAATATGTACGACTATCGGGATGTATTATTTCTCATTTGAAAATATATGTTAAATTTCATTTTTTA

Coding sequence (CDS)

ATGGCATTGAGCAACAATGTCATTGCAGCCATAAACTTCATCGCCTTGCTGCTCTCGATCCCCATCATCGGTGCCGGGATCTGGATCGCAACCCAAGCTGACAACGCCTGTGTGCAACTTTTGCAATGGCCCGTCATCGTTCTCGGCATCGTGATCTTTCTCGTGGCATTGACGGGTTTCATTGGAGCCTTTTGGAGAATCTCAGGGCTTCTAATGTTCTACCTCATTGCCATGCTTGTTCTCATAATCCTACTTGGTAGCTTGGTTCTCTTTGTGTTCTCCGTCACTATGAGAGGTTCGGGTCATACCGAACCAAGCCGAGCTTACTTGGAGTATCACCTCGATGACTTCTCGCTCTGGCTCCAAAGAAGGGTTCGAAGCTCTCATAAATGGGAGAGAATTCGAACTTGTCTTAGTTCTACAACTACATGTGCCGAGTTGAACCAAAACTATAGGTTACCTCAAGATTTCTTCAATGCCCATATCAGCCCTCTCCAGTCGGGGTGTTGCAAGCCACCGACAGATTGTGGGTTCACCTACGTAAACCCGACGTACTGGATTAGTCCGATAAGCAACGGAGCGAGCGTGGATTGCTCGAAATGGAGCAACGAGCAGACTGAGCTATGCTACGGGTGTGATTCATGTAAGGCAGGGTTGCTAGCTAACCTCAAGGAAGAATGGAGAAATGCTGACCTAATTCTGCTGATTGCACTTATAGGTCTTGTTTTTGTGTATTTGATGGCATTTTTGGCTTTAAAAAATGCCAAATCTGAGAACCTTTTCCGCAGACACAAGCAAGGTTATGTCTAA

Protein sequence

MALSNNVIAAINFIALLLSIPIIGAGIWIATQADNACVQLLQWPVIVLGIVIFLVALTGFIGAFWRISGLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLWLQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFFNAHISPLQSGCCKPPTDCGFTYVNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIGLVFVYLMAFLALKNAKSENLFRRHKQGYV

Homology

[Close]

BLAST of CmaCh16G011700 vs. ExPASy Swiss-Prot
Match: Q9FIQ5 (Protein TORNADO 2 OS=Arabidopsis thaliana OX=3702 GN=TRN2 PE=1 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 8.0e-106
Identity = 183/268 (68.28%), Postives = 221/268 (82.46%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWIATQADNACVQLLQWPVIVLGIVIFLVALTGF 60
           M LSNNVI  INFI +LLSIP+IGAGIW+A    N+CV+LLQWPVI+LG++I LV L GF
Sbjct: 1   MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query: 61  IGAFWRISGLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW 120
           IG FWRI+ LL+ YLIAML+LI+LLG LV F++ VT+RGSGH EPSRAYLEY L DFS W
Sbjct: 61  IGGFWRITWLLVVYLIAMLILIVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGW 120

Query: 121 LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFFNAHISPLQSGCCKPPTDCGFTY 180
           L+RRV+ S+KWERIRTCLS+TT C ELNQ Y L QDFFNAH+ P+QSGCCKPPT CGFT+
Sbjct: 121 LRRRVQRSYKWERIRTCLSTTTICPELNQRYTLAQDFFNAHLDPIQSGCCKPPTKCGFTF 180

Query: 181 VNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG 240
           VNPTYWISPI   A +DC  WSN+Q  LCY CDSCKAGLLAN+K +W  AD+ LL+ALIG
Sbjct: 181 VNPTYWISPIDMSADMDCLNWSNDQNTLCYTCDSCKAGLLANIKVDWLKADIFLLLALIG 240

Query: 241 LVFVYLMAFLALKNAKSENLFRRHKQGY 269
           L+ VY++   A +NA++E++FR++KQGY
Sbjct: 241 LIIVYIIGCCAFRNAETEDIFRKYKQGY 268

[Close]

BLAST of CmaCh16G011700 vs. ExPASy Swiss-Prot
Match: Q9ZUN5 (Tetraspanin-2 OS=Arabidopsis thaliana OX=3702 GN=TET2 PE=2 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 3.3e-75
Identity = 138/270 (51.11%), Postives = 193/270 (71.48%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWIATQADNACVQLLQWPVIVLGIVIFLVALTGF 60
           MAL+NN+ A +N +ALL SIPI  +GIW+A++ DN CV LL+WPV+VLG++I +V+ TGF
Sbjct: 1   MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query: 61  IGAFWRISGLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW 120
           IGA+     LL  YL  M +LI LL  +++F F VT     +  P R Y EY L+ FS W
Sbjct: 61  IGAYKYKETLLAVYLCCMAILIGLLLVVLIFAFVVTRPDGSYRVPGRGYKEYRLEGFSNW 120

Query: 121 LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFF-NAHISPLQSGCCKPPTDCGFT 180
           L+  V  S  W R+R CL+ T  C +LNQ +     FF ++ I+PLQSGCCKPPT CG+ 
Sbjct: 121 LKENVVDSKNWGRLRACLADTNVCPKLNQEFITADQFFSSSKITPLQSGCCKPPTACGYN 180

Query: 181 YVNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALI 240
           +VNPT W++P +  A  DC  WSN+Q++LCY C+SCKAGLL NL++EWR A+LIL+I ++
Sbjct: 181 FVNPTLWLNPTNMAADADCYLWSNDQSQLCYNCNSCKAGLLGNLRKEWRKANLILIITVV 240

Query: 241 GLVFVYLMAFLALKNAKSENLFRRHKQGYV 270
            L++VY++A  A +NA++E+LFR++KQG+V
Sbjct: 241 VLIWVYVIACSAFRNAQTEDLFRKYKQGWV 270

[Close]

BLAST of CmaCh16G011700 vs. ExPASy Swiss-Prot
Match: Q9M1E7 (Tetraspanin-3 OS=Arabidopsis thaliana OX=3702 GN=TET3 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 5.1e-60
Identity = 118/262 (45.04%), Postives = 178/262 (67.94%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWIATQADNA-CVQLLQWPVIVLGIVIFLVALTG 60
           M  SN++I  +NF+  LLSIPI+G GIW++++A++  C++ LQWP+IV+GI I +V+L G
Sbjct: 1   MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAG 60

Query: 61  FIGAFWRISGLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSL 120
           F GA +R   L+  YL+ ML++I  L   ++F ++VT +GSG T  +R YL+Y+L+D+S 
Sbjct: 61  FAGACYRNKFLMWLYLVVMLLIIAALIGFIIFAYAVTDKGSGRTVLNRGYLDYYLEDYSG 120

Query: 121 WLQRRVRSSHKWERIRTCLSSTTTCAELNQNYR-LPQD---FFNAHISPLQSGCCKPPTD 180
           WL+ RV     W +I +CL  +  C ++ +N+  +P+    FF   +SP++SGCCKPPTD
Sbjct: 121 WLKDRVSDDSYWGKISSCLRDSGACRKIGRNFNGVPETADMFFLRRLSPVESGCCKPPTD 180

Query: 181 CGFTYVNPTYWISPISN-GASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLIL 240
           CGF+YVN T W +     G + DC  WSN+Q+ LCY C SCKAG+L +LK+ WR   +I 
Sbjct: 181 CGFSYVNETGWDTRGGMIGPNQDCMVWSNDQSMLCYQCSSCKAGVLGSLKKSWRKVSVIN 240

Query: 241 LIALIGLVFVYLMAFLALKNAK 257
           ++ LI LV  Y++A+ A +N K
Sbjct: 241 IVVLIILVIFYVIAYAAYRNVK 262

[Close]

BLAST of CmaCh16G011700 vs. ExPASy Swiss-Prot
Match: Q9SUD4 (Tetraspanin-7 OS=Arabidopsis thaliana OX=3702 GN=TET7 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 9.0e-57
Identity = 110/258 (42.64%), Postives = 157/258 (60.85%), Query Frame = 0


Query: 4   SNNVIAAINFIALLLSIPIIGAGIWIATQADNACVQLLQWPVIVLGIVIFLVALTGFIGA 63
           SNN++  +NF   LLSIPI+ AGIW+   A   C + L  P++VLGI +  V++ G +GA
Sbjct: 5   SNNLLGILNFFTFLLSIPILSAGIWLGKNAATECERFLDKPMVVLGIFLMFVSIAGLVGA 64

Query: 64  FWRISGLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLWLQR 123
             R+S LL  YL AM +LI+L     +F F+VT RG+G     R Y EYH+ D+S WLQ+
Sbjct: 65  CCRVSCLLWLYLFAMFLLILLGFCFTIFAFAVTNRGAGEVISDRGYKEYHVADYSNWLQK 124

Query: 124 RVRSSHKWERIRTCLSSTTTCAELNQNYRL--PQDFFNAHISPLQSGCCKPPTDCGFTYV 183
           RV ++  WERIR+CL  +  C+     Y     +DF+ ++++ LQSGCCKP  DC FTYV
Sbjct: 125 RVNNAKNWERIRSCLMYSDVCSTYRTRYASINVEDFYKSNLNALQSGCCKPSNDCNFTYV 184

Query: 184 NPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIGL 243
           NPT W        + DC+ W N+   LCY C++CKAGLL N+K  W+    + ++ LI L
Sbjct: 185 NPTTWTKTPGPYKNEDCNVWDNKPGTLCYDCEACKAGLLDNIKNSWKKVAKVNIVFLIFL 244

Query: 244 VFVYLMAFLALKNAKSEN 260
           + VY +   A +N +  +
Sbjct: 245 IIVYSVGCCAFRNNRKRS 262

[Close]

BLAST of CmaCh16G011700 vs. ExPASy Swiss-Prot
Match: Q8S8Q6 (Tetraspanin-8 OS=Arabidopsis thaliana OX=3702 GN=TET8 PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.9e-54
Identity = 104/263 (39.54%), Postives = 160/263 (60.84%), Query Frame = 0


Query: 4   SNNVIAAINFIALLLSIPIIGAGIWIATQADNACVQLLQWPVIVLGIVIFLVALTGFIGA 63
           SNN++  +NF+  LLSIPI+  GIW++ +    C + L  PVI LG+ + +VA+ G IG+
Sbjct: 5   SNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAGLIGS 64

Query: 64  FWRISGLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLWLQR 123
             R++ LL  YL  M +LI+L+  + +F F VT +G+G     + Y EY L D+S WLQ+
Sbjct: 65  CCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYSTWLQK 124

Query: 124 RVRSSHKWERIRTCLSSTTTCAELNQNY-RLP-QDFFNAHISPLQSGCCKPPTDCGFTYV 183
           RV +   W +IR+CL  +  C++L   +  +P   F+  H++ LQSGCCKP  +CGF YV
Sbjct: 125 RVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLTALQSGCCKPSDECGFEYV 184

Query: 184 NPTYWI-SPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG 243
           NPT W  +      + DC  W N + +LC+ C SCKAGLL N+K  W+   ++ ++ L+ 
Sbjct: 185 NPTTWTKNTTGTHTNPDCQTWDNAKEKLCFDCQSCKAGLLDNVKSAWKKVAIVNIVFLVF 244

Query: 244 LVFVYLMAFLALKNAKSENLFRR 264
           L+ VY +   A +N K ++ + R
Sbjct: 245 LIIVYSVGCCAFRNNKRDDSYSR 267

[Close]

BLAST of CmaCh16G011700 vs. TAIR 10
Match: AT5G46700.1 (Tetraspanin family protein )

HSP 1 Score: 384.8 bits (987), Expect = 5.7e-107
Identity = 183/268 (68.28%), Postives = 221/268 (82.46%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWIATQADNACVQLLQWPVIVLGIVIFLVALTGF 60
           M LSNNVI  INFI +LLSIP+IGAGIW+A    N+CV+LLQWPVI+LG++I LV L GF
Sbjct: 1   MPLSNNVIGCINFITVLLSIPVIGAGIWLAIGTVNSCVKLLQWPVIILGVLILLVGLAGF 60

Query: 61  IGAFWRISGLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW 120
           IG FWRI+ LL+ YLIAML+LI+LLG LV F++ VT+RGSGH EPSRAYLEY L DFS W
Sbjct: 61  IGGFWRITWLLVVYLIAMLILIVLLGCLVGFIYMVTIRGSGHPEPSRAYLEYSLQDFSGW 120

Query: 121 LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFFNAHISPLQSGCCKPPTDCGFTY 180
           L+RRV+ S+KWERIRTCLS+TT C ELNQ Y L QDFFNAH+ P+QSGCCKPPT CGFT+
Sbjct: 121 LRRRVQRSYKWERIRTCLSTTTICPELNQRYTLAQDFFNAHLDPIQSGCCKPPTKCGFTF 180

Query: 181 VNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG 240
           VNPTYWISPI   A +DC  WSN+Q  LCY CDSCKAGLLAN+K +W  AD+ LL+ALIG
Sbjct: 181 VNPTYWISPIDMSADMDCLNWSNDQNTLCYTCDSCKAGLLANIKVDWLKADIFLLLALIG 240

Query: 241 LVFVYLMAFLALKNAKSENLFRRHKQGY 269
           L+ VY++   A +NA++E++FR++KQGY
Sbjct: 241 LIIVYIIGCCAFRNAETEDIFRKYKQGY 268

[Close]

BLAST of CmaCh16G011700 vs. TAIR 10
Match: AT2G19580.1 (tetraspanin2 )

HSP 1 Score: 283.1 bits (723), Expect = 2.3e-76
Identity = 138/270 (51.11%), Postives = 193/270 (71.48%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWIATQADNACVQLLQWPVIVLGIVIFLVALTGF 60
           MAL+NN+ A +N +ALL SIPI  +GIW+A++ DN CV LL+WPV+VLG++I +V+ TGF
Sbjct: 1   MALANNLTAILNLLALLCSIPITASGIWLASKPDNECVNLLRWPVVVLGVLILVVSATGF 60

Query: 61  IGAFWRISGLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLW 120
           IGA+     LL  YL  M +LI LL  +++F F VT     +  P R Y EY L+ FS W
Sbjct: 61  IGAYKYKETLLAVYLCCMAILIGLLLVVLIFAFVVTRPDGSYRVPGRGYKEYRLEGFSNW 120

Query: 121 LQRRVRSSHKWERIRTCLSSTTTCAELNQNYRLPQDFF-NAHISPLQSGCCKPPTDCGFT 180
           L+  V  S  W R+R CL+ T  C +LNQ +     FF ++ I+PLQSGCCKPPT CG+ 
Sbjct: 121 LKENVVDSKNWGRLRACLADTNVCPKLNQEFITADQFFSSSKITPLQSGCCKPPTACGYN 180

Query: 181 YVNPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALI 240
           +VNPT W++P +  A  DC  WSN+Q++LCY C+SCKAGLL NL++EWR A+LIL+I ++
Sbjct: 181 FVNPTLWLNPTNMAADADCYLWSNDQSQLCYNCNSCKAGLLGNLRKEWRKANLILIITVV 240

Query: 241 GLVFVYLMAFLALKNAKSENLFRRHKQGYV 270
            L++VY++A  A +NA++E+LFR++KQG+V
Sbjct: 241 VLIWVYVIACSAFRNAQTEDLFRKYKQGWV 270

[Close]

BLAST of CmaCh16G011700 vs. TAIR 10
Match: AT3G45600.1 (tetraspanin3 )

HSP 1 Score: 232.6 bits (592), Expect = 3.6e-61
Identity = 118/262 (45.04%), Postives = 178/262 (67.94%), Query Frame = 0


Query: 1   MALSNNVIAAINFIALLLSIPIIGAGIWIATQADNA-CVQLLQWPVIVLGIVIFLVALTG 60
           M  SN++I  +NF+  LLSIPI+G GIW++++A++  C++ LQWP+IV+GI I +V+L G
Sbjct: 1   MRTSNHLIGLVNFLTFLLSIPILGGGIWLSSRANSTDCLRFLQWPLIVIGISIMVVSLAG 60

Query: 61  FIGAFWRISGLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSL 120
           F GA +R   L+  YL+ ML++I  L   ++F ++VT +GSG T  +R YL+Y+L+D+S 
Sbjct: 61  FAGACYRNKFLMWLYLVVMLLIIAALIGFIIFAYAVTDKGSGRTVLNRGYLDYYLEDYSG 120

Query: 121 WLQRRVRSSHKWERIRTCLSSTTTCAELNQNYR-LPQD---FFNAHISPLQSGCCKPPTD 180
           WL+ RV     W +I +CL  +  C ++ +N+  +P+    FF   +SP++SGCCKPPTD
Sbjct: 121 WLKDRVSDDSYWGKISSCLRDSGACRKIGRNFNGVPETADMFFLRRLSPVESGCCKPPTD 180

Query: 181 CGFTYVNPTYWISPISN-GASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLIL 240
           CGF+YVN T W +     G + DC  WSN+Q+ LCY C SCKAG+L +LK+ WR   +I 
Sbjct: 181 CGFSYVNETGWDTRGGMIGPNQDCMVWSNDQSMLCYQCSSCKAGVLGSLKKSWRKVSVIN 240

Query: 241 LIALIGLVFVYLMAFLALKNAK 257
           ++ LI LV  Y++A+ A +N K
Sbjct: 241 IVVLIILVIFYVIAYAAYRNVK 262

[Close]

BLAST of CmaCh16G011700 vs. TAIR 10
Match: AT4G28050.1 (tetraspanin7 )

HSP 1 Score: 221.9 bits (564), Expect = 6.4e-58
Identity = 110/258 (42.64%), Postives = 157/258 (60.85%), Query Frame = 0


Query: 4   SNNVIAAINFIALLLSIPIIGAGIWIATQADNACVQLLQWPVIVLGIVIFLVALTGFIGA 63
           SNN++  +NF   LLSIPI+ AGIW+   A   C + L  P++VLGI +  V++ G +GA
Sbjct: 5   SNNLLGILNFFTFLLSIPILSAGIWLGKNAATECERFLDKPMVVLGIFLMFVSIAGLVGA 64

Query: 64  FWRISGLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLWLQR 123
             R+S LL  YL AM +LI+L     +F F+VT RG+G     R Y EYH+ D+S WLQ+
Sbjct: 65  CCRVSCLLWLYLFAMFLLILLGFCFTIFAFAVTNRGAGEVISDRGYKEYHVADYSNWLQK 124

Query: 124 RVRSSHKWERIRTCLSSTTTCAELNQNYRL--PQDFFNAHISPLQSGCCKPPTDCGFTYV 183
           RV ++  WERIR+CL  +  C+     Y     +DF+ ++++ LQSGCCKP  DC FTYV
Sbjct: 125 RVNNAKNWERIRSCLMYSDVCSTYRTRYASINVEDFYKSNLNALQSGCCKPSNDCNFTYV 184

Query: 184 NPTYWISPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIGL 243
           NPT W        + DC+ W N+   LCY C++CKAGLL N+K  W+    + ++ LI L
Sbjct: 185 NPTTWTKTPGPYKNEDCNVWDNKPGTLCYDCEACKAGLLDNIKNSWKKVAKVNIVFLIFL 244

Query: 244 VFVYLMAFLALKNAKSEN 260
           + VY +   A +N +  +
Sbjct: 245 IIVYSVGCCAFRNNRKRS 262

[Close]

BLAST of CmaCh16G011700 vs. TAIR 10
Match: AT2G23810.1 (tetraspanin8 )

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-55
Identity = 104/263 (39.54%), Postives = 160/263 (60.84%), Query Frame = 0


Query: 4   SNNVIAAINFIALLLSIPIIGAGIWIATQADNACVQLLQWPVIVLGIVIFLVALTGFIGA 63
           SNN++  +NF+  LLSIPI+  GIW++ +    C + L  PVI LG+ + +VA+ G IG+
Sbjct: 5   SNNLVGILNFLVFLLSIPILAGGIWLSQKGSTECERFLDKPVIALGVFLMVVAIAGLIGS 64

Query: 64  FWRISGLLMFYLIAMLVLIILLGSLVLFVFSVTMRGSGHTEPSRAYLEYHLDDFSLWLQR 123
             R++ LL  YL  M +LI+L+  + +F F VT +G+G     + Y EY L D+S WLQ+
Sbjct: 65  CCRVTWLLWVYLFVMFLLILLVFCITVFAFVVTNKGAGEAIEGKGYKEYKLGDYSTWLQK 124

Query: 124 RVRSSHKWERIRTCLSSTTTCAELNQNY-RLP-QDFFNAHISPLQSGCCKPPTDCGFTYV 183
           RV +   W +IR+CL  +  C++L   +  +P   F+  H++ LQSGCCKP  +CGF YV
Sbjct: 125 RVENGKNWNKIRSCLVESKVCSKLEAKFVNVPVNSFYKEHLTALQSGCCKPSDECGFEYV 184

Query: 184 NPTYWI-SPISNGASVDCSKWSNEQTELCYGCDSCKAGLLANLKEEWRNADLILLIALIG 243
           NPT W  +      + DC  W N + +LC+ C SCKAGLL N+K  W+   ++ ++ L+ 
Sbjct: 185 NPTTWTKNTTGTHTNPDCQTWDNAKEKLCFDCQSCKAGLLDNVKSAWKKVAIVNIVFLVF 244

Query: 244 LVFVYLMAFLALKNAKSENLFRR 264
           L+ VY +   A +N K ++ + R
Sbjct: 245 LIIVYSVGCCAFRNNKRDDSYSR 267

The following BLAST results are available for this feature:

BLAST of CmaCh16G011700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIQ5	8.0e-106	68.28	Protein TORNADO 2 OS=Arabidopsis thaliana OX=3702 GN=TRN2 PE=1 SV=1	[more]
Q9ZUN5	3.3e-75	51.11	Tetraspanin-2 OS=Arabidopsis thaliana OX=3702 GN=TET2 PE=2 SV=1	[more]
Q9M1E7	5.1e-60	45.04	Tetraspanin-3 OS=Arabidopsis thaliana OX=3702 GN=TET3 PE=1 SV=1	[more]
Q9SUD4	9.0e-57	42.64	Tetraspanin-7 OS=Arabidopsis thaliana OX=3702 GN=TET7 PE=2 SV=1	[more]
Q8S8Q6	1.9e-54	39.54	Tetraspanin-8 OS=Arabidopsis thaliana OX=3702 GN=TET8 PE=2 SV=1	[more]

BLAST of CmaCh16G011700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46700.1	5.7e-107	68.28	Tetraspanin family protein	[more]
AT2G19580.1	2.3e-76	51.11	tetraspanin2	[more]
AT3G45600.1	3.6e-61	45.04	tetraspanin3	[more]
AT4G28050.1	6.4e-58	42.64	tetraspanin7	[more]
AT2G23810.1	1.3e-55	39.54	tetraspanin8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018499	Tetraspanin/Peripherin	PFAM	PF00335	Tetraspanin	coord: 7..248 e-value: 2.0E-26 score: 93.2
IPR044991	Tetraspani, plant	PANTHER	PTHR32191	TETRASPANIN-8-RELATED	coord: 1..267
None	No IPR available	PANTHER	PTHR32191:SF14	PROTEIN TORNADO 2	coord: 1..267

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G011700.1	CmaCh16G011700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0010305	leaf vascular tissue pattern formation
biological_process	GO:0009554	megasporogenesis
biological_process	GO:0009956	radial pattern formation
biological_process	GO:0009934	regulation of meristem structural organization
biological_process	GO:0010015	root morphogenesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma