CmaCh16G011690 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh16G011690
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPLATZ transcription factor family protein
LocationCma_Chr16: 8959942 .. 8962482 (+)
RNA-Seq ExpressionCmaCh16G011690
SyntenyCmaCh16G011690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGAACCCATTCTCCCCCTCACCGCCTTCACTCTTCTGAAAGATTCATCCTTCTCTCTCTCTCCTCTTTTTCTCTCTCTAGAACCGGCCAAAAACTCTCTCTCTCTCTCTCTCTCTGTTTTCATTTTTTTCCCGATAAATTTCAAGCTGGCGATCGAAAACCACGATAATACTGTCCGTGAAATCAAGCCCAAGAGCAGAAGAATCATGGTATGACGCTTTTTAGGCAGTTTTTTTTCTACTATTTCACTTTCCCGCATTCATTTTCCCTCGCTTTTCTTCATCGGGTTGTTGAATTTTTTCTGTTTAATCTTCTGGGTTTTGCTTCGTTTTCGATTTTTTCATTTGGGTATTGCTTAGTTTTTGATTTTCTCATATGGATTTCGAATTTTCTGGCTTCACTTTCCCGCATTCTGTTCTTCATTCACTGTTCCTCTGTTCTTGTCATCTGGGTTTGCGTTTTAGATCGATTCTCCCTTTTGGGTATTGATTTTTTTCTGTTTTCTCATCTGGGTTTTGCTTAGTTTAACACTTTTTCATTTGGGTATTGCTTGTTTTTCGATTTCGGGCTTCGATTTTTCTGATTTGACTTCCCGCATTTTGTTCTTCCTTCACTGTTCCTCTGTTCTTGTCATCTGGGTTTGTGTTTTAGTTCGATTCTCCCTTCTGGGTATTGGTTTTCTGATATTTTCTCATCTGGGCTTCGATTTGTCTGATTTGACTTTCCCGCATTCTGTTTTTCTTTCACGGTTTCTTTGTTTTTCTCATATGGGTATGGCTTTACCCTCGATTTTCGCATCTGGGTATTGATTTTCTTCTGTTTTCTCATCTGGGTTTTGCTTATTATCCTGTTTTTTCATTTGGGTATTGCTTAGTTTTCGATTTTCTCATCTGGGTTTTCGATTGTTTTCCTCTGTTCTTGATGAGTTCTGTTTCAACAGGGTGCTGGAGGTCCTGATGATGAAGACAACCGATGGCCGCCATGGCTAAAACCTCTACTAAGAGAAACCTTCTTCGTTCAATGCAAACACCACATCGATTCCCACAAAAGCGAATGCAATATGTACTGTTTAGATTGTATGAACGGCGCTCTCTGTTCTCTTTGCCTCAACTTTCACAAAGATCATCGCGCCATTCAGGTCTTGAACTCTCTCCCCATTTTTTCACCTAAATTCAAACCCTAATTTCCCCGTTTTTCTAATCAAATTCTTTGTTTCTTACAGATTCGAAGGTCTTCTTACCATGATGTGATCAGAGTTTCTGAGATTCAAAAGGTTTTGGACATTTCTGGTGTTCAAACTTACATTATCAACAGCGCTAGAGTTGTGTTCTTGAACGAAAGGCCTCAGCCGCGTCCTGGCAAAGGCGTTACGAACACTTGTGAAGTCTGTGAACGCAGCCTCCTTGATTCCTTCCGATTCTGTTCCCTTGGTTGTAAGGTATTGTTCTGTTTGGTTTCCTGGAAAATCAGTGGGAAAATTTAGGAAAAACCCATTTGAAATTGCCCCCAATGAATGCGTTTCGTTAGGATTTGCATTAGTTTCTTTCTTGTTTGGATGCTGAGAAAATTGGTGGGAAAATGAAGGAAAATCCAAATGGAAATTCGTGTCATCAATGTGTTTGTTTGACTGCTTCAAATTCTATTGGACTCTTAATTTTCTCGGAAACCAAACAAGTCAGAAAGGCTTCCCATTTGTCAATCCTCTGTAACCTGATTTTGATTTTGCAGATAGTCGGGACATCGAGGAATTTCCAGAAGAAGAGAGTGGCGGGAGAGGCGGGGGTCGCCGCCACAATGGCGGTATCCGACTCGGAGGACTCGTACAGTAGTAGCAATCATAGGCGGAGCAAGAGCAACAACAGCCACAACAGCCACAACAGCCACAGCAGCAACAAGTTTCAGAGTTTTAGTCCTTCGACGCCGCCTCCAACTTCGGTTAACTATAGGACAGCTAAACGGAGGAAGGGAATCCCACATCGAGCTCCGATGGGAGGGCTAGTTTTAGAATATTAGTATTATTACTTTCTCTTAATTACTTTAAGACCCCTGAAATGTAATGTAATTGCCACGATGCTCCTCTCCGATGCCTGAAGCTTTGTGAAAGAGGCCGGTGTTGGAGGCTTACTCTTAGAGCTTTGTATATAGAAGAAGCATAGATATGGGGGAAGAAGAAGAAGGGAAAAAGAAATAAGGCAAATGTGAAAATATGTGAAATTTAGAGGACTAAAAGGAAAAATAAGTTTGGTAGGTTTGAGTAATTATATGAAATAGGTTGGAGTTATAGGGAATTATACTAAGTTTTGGGGTGAAGTTGTAAATATTGGGTGGGATTTTTCTCTTTCTTATGCTTATTAGATGTCTTGATGAGGATATAATGTAATCCTTGGAATAATGGAATTTGGAAAATGATGTTTATATGTAAAATTAAATGAAAATAAAATATATTGTATTATTTATTTTCTCTATTTATTATTATTATTTTTTTATTAATTATCCCTCTAAAAAATTATATTTTTAGTTTTTGAATTTTTAATATTTGG

mRNA sequence

CAAGAACCCATTCTCCCCCTCACCGCCTTCACTCTTCTGAAAGATTCATCCTTCTCTCTCTCTCCTCTTTTTCTCTCTCTAGAACCGGCCAAAAACTCTCTCTCTCTCTCTCTCTCTGTTTTCATTTTTTTCCCGATAAATTTCAAGCTGGCGATCGAAAACCACGATAATACTGTCCGTGAAATCAAGCCCAAGAGCAGAAGAATCATGGGTGCTGGAGGTCCTGATGATGAAGACAACCGATGGCCGCCATGGCTAAAACCTCTACTAAGAGAAACCTTCTTCGTTCAATGCAAACACCACATCGATTCCCACAAAAGCGAATGCAATATGTACTGTTTAGATTGTATGAACGGCGCTCTCTGTTCTCTTTGCCTCAACTTTCACAAAGATCATCGCGCCATTCAGATTCGAAGGTCTTCTTACCATGATGTGATCAGAGTTTCTGAGATTCAAAAGGTTTTGGACATTTCTGGTGTTCAAACTTACATTATCAACAGCGCTAGAGTTGTGTTCTTGAACGAAAGGCCTCAGCCGCGTCCTGGCAAAGGCGTTACGAACACTTGTGAAGTCTGTGAACGCAGCCTCCTTGATTCCTTCCGATTCTGTTCCCTTGGTTGTAAGATAGTCGGGACATCGAGGAATTTCCAGAAGAAGAGAGTGGCGGGAGAGGCGGGGGTCGCCGCCACAATGGCGGTATCCGACTCGGAGGACTCGTACAGTAGTAGCAATCATAGGCGGAGCAAGAGCAACAACAGCCACAACAGCCACAACAGCCACAGCAGCAACAAGTTTCAGAGTTTTAGTCCTTCGACGCCGCCTCCAACTTCGGTTAACTATAGGACAGCTAAACGGAGGAAGGGAATCCCACATCGAGCTCCGATGGGAGGGCTAGTTTTAGAATATTAGTATTATTACTTTCTCTTAATTACTTTAAGACCCCTGAAATGTAATGTAATTGCCACGATGCTCCTCTCCGATGCCTGAAGCTTTGTGAAAGAGGCCGGTGTTGGAGGCTTACTCTTAGAGCTTTGTATATAGAAGAAGCATAGATATGGGGGAAGAAGAAGAAGGGAAAAAGAAATAAGGCAAATGTGAAAATATGTGAAATTTAGAGGACTAAAAGGAAAAATAAGTTTGGTAGGTTTGAGTAATTATATGAAATAGGTTGGAGTTATAGGGAATTATACTAAGTTTTGGGGTGAAGTTGTAAATATTGGGTGGGATTTTTCTCTTTCTTATGCTTATTAGATGTCTTGATGAGGATATAATGTAATCCTTGGAATAATGGAATTTGGAAAATGATGTTTATATGTAAAATTAAATGAAAATAAAATATATTGTATTATTTATTTTCTCTATTTATTATTATTATTTTTTTATTAATTATCCCTCTAAAAAATTATATTTTTAGTTTTTGAATTTTTAATATTTGG

Coding sequence (CDS)

ATGGGTGCTGGAGGTCCTGATGATGAAGACAACCGATGGCCGCCATGGCTAAAACCTCTACTAAGAGAAACCTTCTTCGTTCAATGCAAACACCACATCGATTCCCACAAAAGCGAATGCAATATGTACTGTTTAGATTGTATGAACGGCGCTCTCTGTTCTCTTTGCCTCAACTTTCACAAAGATCATCGCGCCATTCAGATTCGAAGGTCTTCTTACCATGATGTGATCAGAGTTTCTGAGATTCAAAAGGTTTTGGACATTTCTGGTGTTCAAACTTACATTATCAACAGCGCTAGAGTTGTGTTCTTGAACGAAAGGCCTCAGCCGCGTCCTGGCAAAGGCGTTACGAACACTTGTGAAGTCTGTGAACGCAGCCTCCTTGATTCCTTCCGATTCTGTTCCCTTGGTTGTAAGATAGTCGGGACATCGAGGAATTTCCAGAAGAAGAGAGTGGCGGGAGAGGCGGGGGTCGCCGCCACAATGGCGGTATCCGACTCGGAGGACTCGTACAGTAGTAGCAATCATAGGCGGAGCAAGAGCAACAACAGCCACAACAGCCACAACAGCCACAGCAGCAACAAGTTTCAGAGTTTTAGTCCTTCGACGCCGCCTCCAACTTCGGTTAACTATAGGACAGCTAAACGGAGGAAGGGAATCCCACATCGAGCTCCGATGGGAGGGCTAGTTTTAGAATATTAG

Protein sequence

MGAGGPDDEDNRWPPWLKPLLRETFFVQCKHHIDSHKSECNMYCLDCMNGALCSLCLNFHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSRNFQKKRVAGEAGVAATMAVSDSEDSYSSSNHRRSKSNNSHNSHNSHSSNKFQSFSPSTPPPTSVNYRTAKRRKGIPHRAPMGGLVLEY
Homology
BLAST of CmaCh16G011690 vs. ExPASy Swiss-Prot
Match: Q1G3Q4 (Protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=RITF1 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-31
Identity = 63/127 (49.61%), Postives = 85/127 (66.93%), Query Frame = 0

Query: 14  PPWLKPLLRETFFVQCKHHIDSHKSECNMYCLDCMNGALCSLCLNFHKDHRAIQIRRSSY 73
           P WL  L  E FFV C +H  + K+E N+ CLDC   +LC  C+  H+ HR +Q+RR  Y
Sbjct: 6   PAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCCT-SLCPHCVPSHRFHRLLQVRRYVY 65

Query: 74  HDVIRVSEIQKVLDISGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRF 133
           HDV+R+ ++QK++D S VQ Y INSA+VVF+ +RPQ R  KG  N C  C+RSL + +  
Sbjct: 66  HDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGAGNYCTSCDRSLQEPYIH 125

Query: 134 CSLGCKI 141
           CSLGCK+
Sbjct: 126 CSLGCKV 131

BLAST of CmaCh16G011690 vs. TAIR 10
Match: AT1G32700.1 (PLATZ transcription factor family protein )

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-82
Identity = 157/230 (68.26%), Postives = 181/230 (78.70%), Query Frame = 0

Query: 5   GPDDEDNR-WPPWLKPLLRETFFVQCKHHIDSHKSECNMYCLDCMNGALCSLCLNFHKDH 64
           G ++E N+ +P WLKPLLRE FFVQCK H DSHKSECNMYCLDC NG LCSLCL+FHKDH
Sbjct: 2   GAEEETNKTYPHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSFHKDH 61

Query: 65  RAIQIRRSSYHDVIRVSEIQKVLDISGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVC 124
            AIQIRRSSYHDVIRVSEIQK LDI+GVQTY+INSA+VVFLNERPQPRPGKGV NTCEVC
Sbjct: 62  HAIQIRRSSYHDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPRPGKGVINTCEVC 121

Query: 125 ERSLLDSFRFCSLGCKIVGTSRNFQKKRVAGEAGVAATMAVSDSEDSYSSSNHRRSKSNN 184
            RSL+DSFRFCSLGCKI G S+  +K+          T  +SDS+DSYSS++  R K N+
Sbjct: 122 YRSLVDSFRFCSLGCKISGISKKKRKE---------WTNNLSDSDDSYSSTSIGRLKKND 181

Query: 185 SHNSHNSHSSNKFQSFSPSTPPPTSVNYRTAKRRKGIPHRAPMGGLVLEY 234
              ++         SF+PSTPP ++VN R AKRRKGIPHRAP GGL++EY
Sbjct: 182 DIMNN---------SFTPSTPPLSAVNRRIAKRRKGIPHRAPFGGLIIEY 213

BLAST of CmaCh16G011690 vs. TAIR 10
Match: AT4G17900.1 (PLATZ transcription factor family protein )

HSP 1 Score: 303.1 bits (775), Expect = 1.9e-82
Identity = 156/229 (68.12%), Postives = 174/229 (75.98%), Query Frame = 0

Query: 1   MGAGGPDDEDNRWPPWLKPLLRETFFVQCKHHIDSHKSECNMYCLDCMNGALCSLCLNFH 60
           MGAGGP++E+NRWPPWLKPLL+E FFV CK H DSHKSECNMYCLDC NG LCSLCL  H
Sbjct: 21  MGAGGPEEEENRWPPWLKPLLKEQFFVHCKFHGDSHKSECNMYCLDCTNGPLCSLCLAHH 80

Query: 61  KDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYIINSARVVFLNERPQPRPGKGVTNTC 120
           KDHR IQIRRSSYHDVIRV+EIQK LDI G+QTY+INSA+VVFLNERPQPRPGKGVTNTC
Sbjct: 81  KDHRTIQIRRSSYHDVIRVNEIQKYLDIGGIQTYVINSAKVVFLNERPQPRPGKGVTNTC 140

Query: 121 EVCERSLL-DSFRFCSLGCKIVGTSRNFQKKRVAGEAGVAATMAVSDSEDSYSSSNHRRS 180
           +VC RSL+ DSFRFCSLGCKI GTSR F+K R            + ++EDS SS    ++
Sbjct: 141 KVCYRSLVDDSFRFCSLGCKIAGTSRGFEKGR---------ENLLMETEDSSSSIAIGKN 200

Query: 181 KSNNSHNSHNSHSSNKFQSFSPSTPP-PTSVNYRTAKRRKGIPHRAPMG 228
            +N              QSFSPSTPP  TS N R  KRRKGIPHR+PMG
Sbjct: 201 ITN-------------LQSFSPSTPPLTTSSNCRIVKRRKGIPHRSPMG 227

BLAST of CmaCh16G011690 vs. TAIR 10
Match: AT1G32700.2 (PLATZ transcription factor family protein )

HSP 1 Score: 245.7 bits (626), Expect = 3.6e-65
Identity = 130/192 (67.71%), Postives = 150/192 (78.12%), Query Frame = 0

Query: 42  MYCLDCMNGALCSLCLNFHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYIINSARV 101
           MYCLDC NG LCSLCL+FHKDH AIQIRRSSYHDVIRVSEIQK LDI+GVQTY+INSA+V
Sbjct: 1   MYCLDCTNGPLCSLCLSFHKDHHAIQIRRSSYHDVIRVSEIQKFLDITGVQTYVINSAKV 60

Query: 102 VFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSRNFQKKRVAGEAGVAAT 161
           VFLNERPQPRPGKGV NTCEVC RSL+DSFRFCSLGCKI G S+  +K+          T
Sbjct: 61  VFLNERPQPRPGKGVINTCEVCYRSLVDSFRFCSLGCKISGISKKKRKE---------WT 120

Query: 162 MAVSDSEDSYSSSNHRRSKSNNSHNSHNSHSSNKFQSFSPSTPPPTSVNYRTAKRRKGIP 221
             +SDS+DSYSS++  R K N+   ++         SF+PSTPP ++VN R AKRRKGIP
Sbjct: 121 NNLSDSDDSYSSTSIGRLKKNDDIMNN---------SFTPSTPPLSAVNRRIAKRRKGIP 174

Query: 222 HRAPMGGLVLEY 234
           HRAP GGL++EY
Sbjct: 181 HRAPFGGLIIEY 174

BLAST of CmaCh16G011690 vs. TAIR 10
Match: AT1G21000.1 (PLATZ transcription factor family protein )

HSP 1 Score: 226.5 bits (576), Expect = 2.2e-59
Identity = 125/243 (51.44%), Postives = 160/243 (65.84%), Query Frame = 0

Query: 7   DDEDNRWPPWLKPLLRETFFVQCKHHIDSHKSECNMYCLDCMNGALCSLCLNFHKDHRAI 66
           ++ED   PPWL P+LR ++FV C  H+DS+K+ECN++CLDC   A CS CL  HKDHR +
Sbjct: 9   EEEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVV 68

Query: 67  QIRRSSYHDVIRVSEIQKVLDISGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERS 126
           QIRRSSYH+V+RV+EIQK +DI+ VQTYIINSA++VFLNERPQPR GKGVTNTCE+C RS
Sbjct: 69  QIRRSSYHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRS 128

Query: 127 LLDSFRFCSLGCKIVGTSR-----NFQKKRVAGEAGVAATMAVSDSEDSYSSSNHRRSKS 186
           LLDSFRFCSLGCK+ G  R      F  K   G   +      S+S+++ + +  R++ +
Sbjct: 129 LLDSFRFCSLGCKLGGMRRGDLSLTFSLKGKHGREYLGG----SESDEATTPTKMRKTNA 188

Query: 187 NNSHNSHNSHSSNKFQ-------------------SFSPSTPPPTSVNYRTAKRRKGIPH 226
            N   S  S S+ +F                    SFSP TPP    N+R + RRKG+PH
Sbjct: 189 FNRLMSGLSISTVRFDDYGPNGDQRSSSSGDEGGFSFSPGTPP--IYNHRNSSRRKGVPH 245

BLAST of CmaCh16G011690 vs. TAIR 10
Match: AT1G21000.2 (PLATZ transcription factor family protein )

HSP 1 Score: 226.5 bits (576), Expect = 2.2e-59
Identity = 125/243 (51.44%), Postives = 160/243 (65.84%), Query Frame = 0

Query: 7   DDEDNRWPPWLKPLLRETFFVQCKHHIDSHKSECNMYCLDCMNGALCSLCLNFHKDHRAI 66
           ++ED   PPWL P+LR ++FV C  H+DS+K+ECN++CLDC   A CS CL  HKDHR +
Sbjct: 6   EEEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLVKHKDHRVV 65

Query: 67  QIRRSSYHDVIRVSEIQKVLDISGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERS 126
           QIRRSSYH+V+RV+EIQK +DI+ VQTYIINSA++VFLNERPQPR GKGVTNTCE+C RS
Sbjct: 66  QIRRSSYHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTNTCEICCRS 125

Query: 127 LLDSFRFCSLGCKIVGTSR-----NFQKKRVAGEAGVAATMAVSDSEDSYSSSNHRRSKS 186
           LLDSFRFCSLGCK+ G  R      F  K   G   +      S+S+++ + +  R++ +
Sbjct: 126 LLDSFRFCSLGCKLGGMRRGDLSLTFSLKGKHGREYLGG----SESDEATTPTKMRKTNA 185

Query: 187 NNSHNSHNSHSSNKFQ-------------------SFSPSTPPPTSVNYRTAKRRKGIPH 226
            N   S  S S+ +F                    SFSP TPP    N+R + RRKG+PH
Sbjct: 186 FNRLMSGLSISTVRFDDYGPNGDQRSSSSGDEGGFSFSPGTPP--IYNHRNSSRRKGVPH 242

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q1G3Q41.9e-3149.61Protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN... [more]
Match NameE-valueIdentityDescription
AT1G32700.11.1e-8268.26PLATZ transcription factor family protein [more]
AT4G17900.11.9e-8268.12PLATZ transcription factor family protein [more]
AT1G32700.23.6e-6567.71PLATZ transcription factor family protein [more]
AT1G21000.12.2e-5951.44PLATZ transcription factor family protein [more]
AT1G21000.22.2e-5951.44PLATZ transcription factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006734PLATZ transcription factorPFAMPF04640PLATZcoord: 69..140
e-value: 2.6E-30
score: 104.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..233
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..210
NoneNo IPR availablePANTHERPTHR31065:SF64SUBFAMILY NOT NAMEDcoord: 1..229
NoneNo IPR availablePANTHERPTHR31065PLATZ TRANSCRIPTION FACTOR FAMILY PROTEINcoord: 1..229

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G011690.1CmaCh16G011690.1mRNA