Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGACCCGGAATAAGCTCTTCTGCATGTCCTTTCTCTTCTCTCTTCATCCTCCCCATTATATACCTTTCTCTCTCTTGCGCACTGCCCCCATTTCAATTTCAGCAACTCACACCAAATCAATCGCCGATCTTCTTCAAACCCAGTGAGTTTCTCTGGTTATTCATCAATAATTTCATTAATTACGTTCCAATTTTGATTGAAATACTATCAGTTTCTCAATCGACTGTAAATCTCCACGACTCTTCAATCTCTTCTTTGAGTTTTGTTTCCCTTGTTTTCATTCGTATTTTCAAACGATTGTAAATGGGTTGCACGGTGAGAGATAAGCATGTTCGTACGAATCGGAGGCCTCGATCGGTAAAACCCGAATTCGATCCGTGTTGTCACCAAGAACGAGCTTCACTTCCCAAATCTGTACTTGAATCGGGTTCCAAGCCGTTGGATTATCATATAGGGCTTGACGATTCGAACCAGGATAACGCTGTTACCTCAAACTGTAATTCCGGTTCCAGCTTGGATGATCTTGGATGGGGTTACTGTACGGAGGAGCAATTGGAGGAAATTTTGATGAAGAATTTGCAATTTGTTTATACTGAAGCTATTTCTAAGCTTGTTGCATTGGGTTATGATGAGGATGCTGCGATGAGGGCGATTTTGCAAAATGGGCATTGCTATGGTACCATGGATGTTCTAACAAATGTGCTGCATAATTCGCTGTCGTTTTTGAATGGTAACAACAACTCTGATAGTGCTAGCAGCGAGGCTGTTGCAGCTGCTTCTGCTGCTGCCGCTGCCGCTGCTGCGGCCGCTTCTGCTGATGGTGTTGGTATTGGACCCATCGGTAATGGTAATGGTATTGCTATTGATAATGTTAATGCTAATTTGGTTGTGGATGATCCTGAGCCTGCGTTCTCTGATATAAGGCAATTGCAGGAGTATTCTTTGGCTGGTATGGTATGTTTGTTGCAACAAGTTAGGCCACAGTTGACTAAAGGAGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTCGGTCGGGCAAGCACCATGGAAATTCCGGTGCTTCCTTCAGCACCAAGTAATGTTAATGGTGACGCATCTGGTGGCAATGGTGAGAATGTTAGTAACCAACCAGTGGGATTTTTGGAACCATCTCTTTGTAAATTTCATGGTGGTTCAGGTTTTGGAAACAGTGGAGGTTCTGAATTCTCTGCTAATGGTTTTCTGTCTTATTCTCCTGATATGGATTTACATAGAGATATTGAGTGTCCAAAGAGGTTTAATCTTTCTCCTTCAATGAAGTCGTTGTTGAAGAGGAATGTGGCTGCATTTGCTGCTGGTTTTCGAGCAAACTCGAAACACCTTACAGCACAGACTCAAGCTTGTGCAACTGTCTTGCCAAGTGAAATTCCCCCTGTCGTACAAGGTGCTTCGGTAGTTCCAGTGGAGAAAAGTGAGGAGTCCCAGATTCCAAAGAACCAAGATGCTGTAAATTCAATGTTGAATAAATTTCGCGATTTGAAGATTTATGAGAATTTGGATTTTGTGGCAGACGATAAAAAGGATGAAGTGATTGTAAATCTCTTGCATCAGATTAAAGAGCTTGAGAGACAAGTGAAGGAGCGGAAAGATTGGGCGCATCAAAAGGCAATGCAAGCTGCTAGGAAACTGAGTCATGATCTCACGGAGCTTAAAACGTTGAGGATAGAAAGGGAAGAGACCCAACGCATGAAAAATGGCAAACCGACTTTGGAGGACACAACAATGAAACGGCTATCTGAGATGGAGAATGCGTTGAGAAAGGCCAGTGGTCAGGTGGACCGTGCAAATTCAACAGTACGACGACTTGAGACAGAAAATGCAGAAATTAGAGCAGAGATGGAAGCTTTAAAGTTAAGTGCCTCCGAGTCTGTCACAACTTGTTTGGAGGTTGCAAAGAGGGAGAAAAAAAGCTTAAAGAGACTATTGGCCTGGGAAAAGCAAAAAACAAAATTACAGGAGCAGATTGCAGAGGAGAAGGATAAGATTTCAAGGTTGCAAGATGAAATGGAGATGATCAAGGTAGCTCAAAAAGAGGCTGAGGTAAGAAATCATCTTTCTTTCCTGTTCCTCTTACACTGTCCTAATTTCTAGGCCATTCCTGTTGTTTGATATTCAATTAAAACAGCATATTCAAGTTAGAAATAGTTATATATTTACACAAACAATGAACAATGAATCAACACAAGTCATATAATAGCATGGTGTCGTAAATCAGCTGTCAGCTCCATTTAGGATAGGATTAGTGGTCAGTTTACCCCTCTTTCATCCTAATGATTTACTATTTTTCTGACCACCCAACTGGATTGGGAGCTGTGGGCTTGATATTGTCAGAAAATAGTTCCATAATCCAAGGTTTGCATTGTCATATAACCCAAGAGGTCTTAGTTTTTTTGCTGATTGTGTCATCTGAGGTTGACAACTGAACATTGAAGGCTATGATTCAAAATCATTACAGTTACGAGGCTGTTCTTTATTCTTGCTTGTTTTTCATATCACATGAAATAATGTTTCATTACAAGTTCCAAGTTGGAACTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAATATTCTTTATAAGGGTGTGGAAACCTCTACTTAGTAGATGCGTTTTAAAAACCTTGAGGAAAGCTCGAAGGGAAAAGTCCAAAGAGGACAATATCTGCTAACGGTCGGCTTGGGTTGTTACAAATGGTATTAGAGCCAGACACCGGGTGATGTGCCAAGAAGGAGGCTAAGATCCAAAGGGGGGTGGACACGGGGAGGTGTGTCAGCAAGGACACTGGGCCCTGAAAGAGGGTGAATTGAGGGGTCCCACATCGATTGGAGAAGAGAATGAGTGCTAGGGAGGACGTTGGGTCCTGAAGGGGGGGTGGATTGTGAGATCCTACATCGGTTGGAGAGGAAAACAAAGCATTATTTATAAGGGTGTCGAAATCTCTCCCTTGCAGACGTGTTTTAGAAACCTTGAGGGGAAACCCGAAAGAGAAAGTCCAAAGAGGATAATACCTGCTAGTGGTGGACTTGAGCTGTTACAGGAACTGCCATGTGAAACTTGTTATTATAATTTTTATCGCTCAGCCAATTTCCGACTCACGGAACCATAGTGATTCTGCTTCTGTGATGTTCATACCCTTGCTTTAGTTATTTGTCAAAGAATCTGCATTTTTGTTTGTTCTGTATTATGCATATAGTATATGGTAATTTTGATTCTAATCACTCTTTTCTTTTTTCTTTTAAATGTTCAATCAAATGTTTGCCTGAGATGGAGTTATGAAAGTTATTCTTAAGATAGTTGAATTGTAGCTGTCAATTTGTCCTGCATTCCTTGTTCAATCAAACACCTTGCCCTTCCTTCATCATTTGGCAATTAACAAATAGCACGTTATTTATTGATGATTATTTTCTCGAGTCTGAAATCGCTTCATATAGTCTTCATTATCATCTACTGTGCAAATGATGACGTATTTACAGGCTAGGTGGAGGCAGGAGTTGAATGCTAAGGAAGCTGCCATGGCACAAGTGGAAGACGAAAGACTTCGTAAAGAGGCAGCAGAGGCGAGTAGTAAAAGAAAGCTCGAGGCATTACGACTTAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTCCAAAGGCTTGAACAAGAACTTTTGCGTCTAAAGGCATCTGCACAATCTATTGACTCACACCAACCCTCCAGTAACACACCTAGAGGGAATTCCGAGGGCGTAAAACCCCAGGGAGAAACAATCGCGAAAATGCTTCGGGAATTAGATAGCTATGAGGAATCAACGGAGGAAGGCGTCAACCACGACCGCGAATGCATGATATGTATGAGAGGTGAGGTCTCCATTGTTTTCTTACCTTGCGCTCACCAAGTTCTGTGTGCGAGTTGCAGTGATAGTTACGGGAAAAAGGGTAAAGCAGCATGCCCGTGTTGTCGGGTTCCGATAGAACAGAGAATCCGAGTTTTTGGTGCGAGTTCATAGAAGAATAGTAAGAGTTGTCTCAAGTGCAGCATTTCTTTGTTAAAAACACAGCATTTCAGTGCGGTGCAGGTATTGGGTAGTTTGTATACCTTTGAATATGTTTACAGTTTACTGAATATACTTGGTTGAACATGCTTCTGGTCTGGTATATCAAAAATGGCTATCAGTGTGTATAAATAAAATGAACATATGGGGTGTGATGCCCTTTGTCTATGCCCACTTTTCCATATCTAAATCGCTTGCTTTCTCAAAAGAATCAGTTTGCTGATGTTTATGGCTACACCAAAATGACTCGGGAATGACTCGGGGAAGGGGAAGGGGAAGTGGAAGGGTTTCATTTTGAGGTTATATATAGCTCATGTATTTTAACTTTGTAAAAAGTGAAAAATGTAGTAAAAAAAGTATTTGTGCTTTCTTTGTAATTATATGTAGTTTATGATTGATCATGCATCATAACGTTACTGAGTATGTGACGAAGT
mRNA sequence
CGACCCGGAATAAGCTCTTCTGCATGTCCTTTCTCTTCTCTCTTCATCCTCCCCATTATATACCTTTCTCTCTCTTGCGCACTGCCCCCATTTCAATTTCAGCAACTCACACCAAATCAATCGCCGATCTTCTTCAAACCCAGTGAGTTTCTCTGGTTATTCATCAATAATTTCATTAATTACGTTCCAATTTTGATTGAAATACTATCAGTTTCTCAATCGACTGTAAATCTCCACGACTCTTCAATCTCTTCTTTGAGTTTTGTTTCCCTTGTTTTCATTCGTATTTTCAAACGATTGTAAATGGGTTGCACGGTGAGAGATAAGCATGTTCGTACGAATCGGAGGCCTCGATCGGTAAAACCCGAATTCGATCCGTGTTGTCACCAAGAACGAGCTTCACTTCCCAAATCTGTACTTGAATCGGGTTCCAAGCCGTTGGATTATCATATAGGGCTTGACGATTCGAACCAGGATAACGCTGTTACCTCAAACTGTAATTCCGGTTCCAGCTTGGATGATCTTGGATGGGGTTACTGTACGGAGGAGCAATTGGAGGAAATTTTGATGAAGAATTTGCAATTTGTTTATACTGAAGCTATTTCTAAGCTTGTTGCATTGGGTTATGATGAGGATGCTGCGATGAGGGCGATTTTGCAAAATGGGCATTGCTATGGTACCATGGATGTTCTAACAAATGTGCTGCATAATTCGCTGTCGTTTTTGAATGGTAACAACAACTCTGATAGTGCTAGCAGCGAGGCTGTTGCAGCTGCTTCTGCTGCTGCCGCTGCCGCTGCTGCGGCCGCTTCTGCTGATGGTGTTGGTATTGGACCCATCGGTAATGGTAATGGTATTGCTATTGATAATGTTAATGCTAATTTGGTTGTGGATGATCCTGAGCCTGCGTTCTCTGATATAAGGCAATTGCAGGAGTATTCTTTGGCTGGTATGGTATGTTTGTTGCAACAAGTTAGGCCACAGTTGACTAAAGGAGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTCGGTCGGGCAAGCACCATGGAAATTCCGGTGCTTCCTTCAGCACCAAGTAATGTTAATGGTGACGCATCTGGTGGCAATGGTGAGAATGTTAGTAACCAACCAGTGGGATTTTTGGAACCATCTCTTTGTAAATTTCATGGTGGTTCAGGTTTTGGAAACAGTGGAGGTTCTGAATTCTCTGCTAATGGTTTTCTGTCTTATTCTCCTGATATGGATTTACATAGAGATATTGAGTGTCCAAAGAGGTTTAATCTTTCTCCTTCAATGAAGTCGTTGTTGAAGAGGAATGTGGCTGCATTTGCTGCTGGTTTTCGAGCAAACTCGAAACACCTTACAGCACAGACTCAAGCTTGTGCAACTGTCTTGCCAAGTGAAATTCCCCCTGTCGTACAAGGTGCTTCGGTAGTTCCAGTGGAGAAAAGTGAGGAGTCCCAGATTCCAAAGAACCAAGATGCTGTAAATTCAATGTTGAATAAATTTCGCGATTTGAAGATTTATGAGAATTTGGATTTTGTGGCAGACGATAAAAAGGATGAAGTGATTGTAAATCTCTTGCATCAGATTAAAGAGCTTGAGAGACAAGTGAAGGAGCGGAAAGATTGGGCGCATCAAAAGGCAATGCAAGCTGCTAGGAAACTGAGTCATGATCTCACGGAGCTTAAAACGTTGAGGATAGAAAGGGAAGAGACCCAACGCATGAAAAATGGCAAACCGACTTTGGAGGACACAACAATGAAACGGCTATCTGAGATGGAGAATGCGTTGAGAAAGGCCAGTGGTCAGGTGGACCGTGCAAATTCAACAGTACGACGACTTGAGACAGAAAATGCAGAAATTAGAGCAGAGATGGAAGCTTTAAAGTTAAGTGCCTCCGAGTCTGTCACAACTTGTTTGGAGGTTGCAAAGAGGGAGAAAAAAAGCTTAAAGAGACTATTGGCCTGGGAAAAGCAAAAAACAAAATTACAGGAGCAGATTGCAGAGGAGAAGGATAAGATTTCAAGGTTGCAAGATGAAATGGAGATGATCAAGGTAGCTCAAAAAGAGGCTGAGGCTAGGTGGAGGCAGGAGTTGAATGCTAAGGAAGCTGCCATGGCACAAGTGGAAGACGAAAGACTTCGTAAAGAGGCAGCAGAGGCGAGTAGTAAAAGAAAGCTCGAGGCATTACGACTTAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTCCAAAGGCTTGAACAAGAACTTTTGCGTCTAAAGGCATCTGCACAATCTATTGACTCACACCAACCCTCCAGTAACACACCTAGAGGGAATTCCGAGGGCGTAAAACCCCAGGGAGAAACAATCGCGAAAATGCTTCGGGAATTAGATAGCTATGAGGAATCAACGGAGGAAGGCGTCAACCACGACCGCGAATGCATGATATGTATGAGAGGTGAGGTCTCCATTGTTTTCTTACCTTGCGCTCACCAAGTTCTGTGTGCGAGTTGCAGTGATAGTTACGGGAAAAAGGGTAAAGCAGCATGCCCGTGTTGTCGGGTTCCGATAGAACAGAGAATCCGAGTTTTTGGTGCGAGTTCATAGAAGAATAGTAAGAGTTGTCTCAAGTGCAGCATTTCTTTGTTAAAAACACAGCATTTCAGTGCGGTGCAGGTATTGGGTAGTTTGTATACCTTTGAATATGTTTACAGTTTACTGAATATACTTGGTTGAACATGCTTCTGGTCTGGTATATCAAAAATGGCTATCAGTGTGTATAAATAAAATGAACATATGGGGTGTGATGCCCTTTGTCTATGCCCACTTTTCCATATCTAAATCGCTTGCTTTCTCAAAAGAATCAGTTTGCTGATGTTTATGGCTACACCAAAATGACTCGGGAATGACTCGGGGAAGGGGAAGGGGAAGTGGAAGGGTTTCATTTTGAGGTTATATATAGCTCATGTATTTTAACTTTGTAAAAAGTGAAAAATGTAGTAAAAAAAGTATTTGTGCTTTCTTTGTAATTATATGTAGTTTATGATTGATCATGCATCATAACGTTACTGAGTATGTGACGAAGT
Coding sequence (CDS)
ATGGGTTGCACGGTGAGAGATAAGCATGTTCGTACGAATCGGAGGCCTCGATCGGTAAAACCCGAATTCGATCCGTGTTGTCACCAAGAACGAGCTTCACTTCCCAAATCTGTACTTGAATCGGGTTCCAAGCCGTTGGATTATCATATAGGGCTTGACGATTCGAACCAGGATAACGCTGTTACCTCAAACTGTAATTCCGGTTCCAGCTTGGATGATCTTGGATGGGGTTACTGTACGGAGGAGCAATTGGAGGAAATTTTGATGAAGAATTTGCAATTTGTTTATACTGAAGCTATTTCTAAGCTTGTTGCATTGGGTTATGATGAGGATGCTGCGATGAGGGCGATTTTGCAAAATGGGCATTGCTATGGTACCATGGATGTTCTAACAAATGTGCTGCATAATTCGCTGTCGTTTTTGAATGGTAACAACAACTCTGATAGTGCTAGCAGCGAGGCTGTTGCAGCTGCTTCTGCTGCTGCCGCTGCCGCTGCTGCGGCCGCTTCTGCTGATGGTGTTGGTATTGGACCCATCGGTAATGGTAATGGTATTGCTATTGATAATGTTAATGCTAATTTGGTTGTGGATGATCCTGAGCCTGCGTTCTCTGATATAAGGCAATTGCAGGAGTATTCTTTGGCTGGTATGGTATGTTTGTTGCAACAAGTTAGGCCACAGTTGACTAAAGGAGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTCGGTCGGGCAAGCACCATGGAAATTCCGGTGCTTCCTTCAGCACCAAGTAATGTTAATGGTGACGCATCTGGTGGCAATGGTGAGAATGTTAGTAACCAACCAGTGGGATTTTTGGAACCATCTCTTTGTAAATTTCATGGTGGTTCAGGTTTTGGAAACAGTGGAGGTTCTGAATTCTCTGCTAATGGTTTTCTGTCTTATTCTCCTGATATGGATTTACATAGAGATATTGAGTGTCCAAAGAGGTTTAATCTTTCTCCTTCAATGAAGTCGTTGTTGAAGAGGAATGTGGCTGCATTTGCTGCTGGTTTTCGAGCAAACTCGAAACACCTTACAGCACAGACTCAAGCTTGTGCAACTGTCTTGCCAAGTGAAATTCCCCCTGTCGTACAAGGTGCTTCGGTAGTTCCAGTGGAGAAAAGTGAGGAGTCCCAGATTCCAAAGAACCAAGATGCTGTAAATTCAATGTTGAATAAATTTCGCGATTTGAAGATTTATGAGAATTTGGATTTTGTGGCAGACGATAAAAAGGATGAAGTGATTGTAAATCTCTTGCATCAGATTAAAGAGCTTGAGAGACAAGTGAAGGAGCGGAAAGATTGGGCGCATCAAAAGGCAATGCAAGCTGCTAGGAAACTGAGTCATGATCTCACGGAGCTTAAAACGTTGAGGATAGAAAGGGAAGAGACCCAACGCATGAAAAATGGCAAACCGACTTTGGAGGACACAACAATGAAACGGCTATCTGAGATGGAGAATGCGTTGAGAAAGGCCAGTGGTCAGGTGGACCGTGCAAATTCAACAGTACGACGACTTGAGACAGAAAATGCAGAAATTAGAGCAGAGATGGAAGCTTTAAAGTTAAGTGCCTCCGAGTCTGTCACAACTTGTTTGGAGGTTGCAAAGAGGGAGAAAAAAAGCTTAAAGAGACTATTGGCCTGGGAAAAGCAAAAAACAAAATTACAGGAGCAGATTGCAGAGGAGAAGGATAAGATTTCAAGGTTGCAAGATGAAATGGAGATGATCAAGGTAGCTCAAAAAGAGGCTGAGGCTAGGTGGAGGCAGGAGTTGAATGCTAAGGAAGCTGCCATGGCACAAGTGGAAGACGAAAGACTTCGTAAAGAGGCAGCAGAGGCGAGTAGTAAAAGAAAGCTCGAGGCATTACGACTTAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTCCAAAGGCTTGAACAAGAACTTTTGCGTCTAAAGGCATCTGCACAATCTATTGACTCACACCAACCCTCCAGTAACACACCTAGAGGGAATTCCGAGGGCGTAAAACCCCAGGGAGAAACAATCGCGAAAATGCTTCGGGAATTAGATAGCTATGAGGAATCAACGGAGGAAGGCGTCAACCACGACCGCGAATGCATGATATGTATGAGAGGTGAGGTCTCCATTGTTTTCTTACCTTGCGCTCACCAAGTTCTGTGTGCGAGTTGCAGTGATAGTTACGGGAAAAAGGGTAAAGCAGCATGCCCGTGTTGTCGGGTTCCGATAGAACAGAGAATCCGAGTTTTTGGTGCGAGTTCATAG
Protein sequence
MGCTVRDKHVRTNRRPRSVKPEFDPCCHQERASLPKSVLESGSKPLDYHIGLDDSNQDNAVTSNCNSGSSLDDLGWGYCTEEQLEEILMKNLQFVYTEAISKLVALGYDEDAAMRAILQNGHCYGTMDVLTNVLHNSLSFLNGNNNSDSASSEAVAAASAAAAAAAAAASADGVGIGPIGNGNGIAIDNVNANLVVDDPEPAFSDIRQLQEYSLAGMVCLLQQVRPQLTKGDAMWCLLMSDLHVGRASTMEIPVLPSAPSNVNGDASGGNGENVSNQPVGFLEPSLCKFHGGSGFGNSGGSEFSANGFLSYSPDMDLHRDIECPKRFNLSPSMKSLLKRNVAAFAAGFRANSKHLTAQTQACATVLPSEIPPVVQGASVVPVEKSEESQIPKNQDAVNSMLNKFRDLKIYENLDFVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSHDLTELKTLRIEREETQRMKNGKPTLEDTTMKRLSEMENALRKASGQVDRANSTVRRLETENAEIRAEMEALKLSASESVTTCLEVAKREKKSLKRLLAWEKQKTKLQEQIAEEKDKISRLQDEMEMIKVAQKEAEARWRQELNAKEAAMAQVEDERLRKEAAEASSKRKLEALRLKIEIDFQRHKDDLQRLEQELLRLKASAQSIDSHQPSSNTPRGNSEGVKPQGETIAKMLRELDSYEESTEEGVNHDRECMICMRGEVSIVFLPCAHQVLCASCSDSYGKKGKAACPCCRVPIEQRIRVFGASS
Homology
BLAST of CmaCh16G011470 vs. ExPASy Swiss-Prot
Match:
Q8RX22 (MND1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=MIP1 PE=1 SV=1)
HSP 1 Score: 665.6 bits (1716), Expect = 6.7e-190
Identity = 398/781 (50.96%), Postives = 517/781 (66.20%), Query Frame = 0
Query: 1 MGCTVRDKHVRTNRRPRSVKPEFD-PCCHQERASLPKSVLESGSKPLDYHIGLDDSNQD- 60
MGCTVR+KHV+ RR ++ D P C E+ ++ +S++E+ L YH GL DS
Sbjct: 1 MGCTVREKHVKPTRRIKAAAFRSDPPLCWVEKIAMSQSIVEN----LVYHPGLTDSGSVN 60
Query: 61 -NAVTSNCNSGSSLDDLGWGYCTEEQLEEILMKNLQFVYTEAISKLVALGYDEDAAMRAI 120
N+VT N ++ W YCTEE LEEIL+K+L+F+Y +A+SKL+ LGY+E A++A+
Sbjct: 61 LNSVTEN------PEENFWAYCTEEHLEEILLKHLEFLYNQAVSKLLELGYEERVALKAV 120
Query: 121 LQNGHCYGTMDVLTNVLHNSLSFLNGNNNSDSASSEAVAAASAAAAAAAAAASADGVGIG 180
L NGHCYG +DVLTN+++NSLS+LN + G G G
Sbjct: 121 LSNGHCYGELDVLTNIVNNSLSYLN----------------------------SGGGGGG 180
Query: 181 PIGNGNGIAIDNVNANLVVDDPEPAFSDIRQLQEYSLAGMVCLLQQVRPQLTKGDAMWCL 240
GNG D E F+D+R L+EYSLAGM+ LLQQV+P L+KGDAMWCL
Sbjct: 181 SNGNGE-------------DRTETGFTDLRDLEEYSLAGMIYLLQQVKPNLSKGDAMWCL 240
Query: 241 LMSDLHVGRASTMEIPVLPSA-----PSNVNGDASGGNGENVSNQPVGFLEPSLCKFHGG 300
LMS+LHVGRAST+++P S+ SNV +GG + GF+ P+LC+FHGG
Sbjct: 241 LMSELHVGRASTLDVPTNRSSCCTKEDSNVEDVGTGG-----TLDIAGFMAPALCRFHGG 300
Query: 301 SGFGNSGGSEFSANGFLSYSPDMDLHRDIECPKRFNLSPSMKSLLKRNVAAFAAGFRANS 360
GFGN GG EFS NGF ++ L R+I+CPKRFNLSPSMKSLLKRNVAAFAAG+RA+
Sbjct: 301 WGFGNGGGPEFSGNGFSMKGAELKLQREIDCPKRFNLSPSMKSLLKRNVAAFAAGYRASM 360
Query: 361 KHLTAQTQACATVLPSEI---PPVVQGASVVPVEKSEESQIPKNQDAVNSMLNKFRDLKI 420
K Q Q+ T+ S+ P +V+ P + E ++V+++L KFRDL +
Sbjct: 361 KQ--KQIQSSDTIGDSKACNDPAIVKSCGQQPRKSGSE-------ESVSTVLEKFRDLNL 420
Query: 421 YENLDFVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSHDLTELKTLRI 480
+NL+ V D KD VIV+LLHQ+K+ E++VKERK+WA + AMQAA+K+S +L ELKTL
Sbjct: 421 DDNLESVGVDDKDCVIVDLLHQVKDFEKKVKERKEWAQKNAMQAAQKVSEELAELKTLSS 480
Query: 481 EREETQRMKNGKPTLEDTTMKRLSEMENALRKASGQVDRANSTVRRLETENAEIRAEMEA 540
ERE Q +K GK +E++T KR ++ E LRKA Q DRAN VR+LE +NAEIRAE E
Sbjct: 481 EREGIQLLKKGKQAVEESTAKRFTDKEIELRKACSQNDRANVIVRKLENQNAEIRAEREG 540
Query: 541 LKLSASESVTTCLEVAKREKKSLKRLLAWEKQKTKLQEQIAEEKDKISRLQDEMEMIKVA 600
KLSASES+ C+E +K+EKK LK+L+AWEKQ KLQ++I EK+KI L + I
Sbjct: 541 SKLSASESLKACMEASKKEKKCLKKLVAWEKQILKLQDEITAEKEKIKALYKTLAQITEY 600
Query: 601 QKEAEARWRQELNAKEAAMAQVEDERLRKEAAEASSKRKLEALRLKIEIDFQRHKDDLQR 660
+KE EA+WRQE AKE A+AQ+E+E+ KEAAE +KRKLE LRLKIE+DFQRHKDD QR
Sbjct: 601 EKEIEAKWRQEQKAKEEALAQMEEEQRSKEAAEGHNKRKLETLRLKIELDFQRHKDDHQR 660
Query: 661 LEQELLRLKASAQSIDSHQPSSNTPRGNSEGVKPQGETIAKMLRELDSYEESTEEGVNHD 720
LEQEL RLKAS+ S DS S+N + K QGE IAK+L E+D E S + N+D
Sbjct: 661 LEQELGRLKASSDS-DSSHISNNAWKPK----KSQGENIAKLLEEIDKLEGSYDNEANYD 711
Query: 721 RECMICMRGEVSIVFLPCAHQVLCASCSDSY----GKKGKAACPCCRVPIEQRIRVFGAS 767
REC+ICM+ EVS+VFLPCAHQV+C SCSDS+ K CPCCR ++QRIR+FGA+
Sbjct: 721 RECIICMKDEVSVVFLPCAHQVVCGSCSDSFFASNNGGSKVTCPCCRGLVQQRIRIFGAT 711
BLAST of CmaCh16G011470 vs. ExPASy Swiss-Prot
Match:
Q0WPJ7 (Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana OX=3702 GN=RF298 PE=2 SV=1)
HSP 1 Score: 221.5 bits (563), Expect = 3.3e-56
Identity = 212/776 (27.32%), Postives = 366/776 (47.16%), Query Frame = 0
Query: 72 DDLGWGYCTEEQLEEILMKNLQFVYTEAISKLVALGYDEDAAMRAILQNGHCYGTMDVLT 131
D +GW LE +L NL ++ A+++++ GY ED ++AI + G D+++
Sbjct: 82 DSVGWDDPFACHLEGLLSSNLLTLFRSAMNQIMDCGYSEDVVLKAISSSRFYCGGTDLVS 141
Query: 132 NVLHNSLSFLNGNNNSDSASSEAVAAASAAAAAAAAAASADGVGIGPIGNGNGIAIDNVN 191
N+++++LSFL A S D V
Sbjct: 142 NIVNDTLSFLKSGKK--------------------VAGSRDYV----------------- 201
Query: 192 ANLVVDDPEPAFSDIRQLQEYSLAGMVCLLQQVRPQLTKGDAMWCLLMSDLHVGRA---- 251
F D++QL YSL + L+++VRP L+ +AMW LL+ DL+V +A
Sbjct: 202 -----------FEDLQQLVAYSLVEKISLVREVRPSLSTDEAMWRLLICDLNVLKAFEVD 261
Query: 252 -------------STMEIPVL----PSAPSNVNGDASGGNGENVSNQPVGF-----LEPS 311
+ E PV P + N A N ++ ++PV F + S
Sbjct: 262 ADGLEGSSVSNASKSSESPVAECNPPKSSDADNPKAPVSNTQSKQSEPVKFGNFANVNNS 321
Query: 312 LCKFHGGSGFGNSGGSEFSANGFLSYSPDMDLHRD---IECPK-RFNLSPSM---KSLLK 371
G+ G S +A+G + S + D + C K R +M KS ++
Sbjct: 322 KNPHASGATPGKEVFSVSTASGEGTKSASLTSVSDEKLVSCRKGRTKKEMAMLRQKSCVE 381
Query: 372 R----------NVAAFAAGF------RANSKHLTAQTQACATVLPSEIP--PVVQGASVV 431
+ A F GF ++ S L+AQ + ++ + +E+ P+ + +S +
Sbjct: 382 KIRTYSKGGGYKTAKF-GGFLVEKRGKSASDLLSAQARNSSSKITTEVMKIPLAESSSTL 441
Query: 432 ---------------------------PVEKSEES-QIPKNQDAVNS--MLNKFRDLKIY 491
PV ++S P+ + +V++ + + +
Sbjct: 442 SNSTKSDSPALDVKEHVTALPANNAPAPVASEKKSGSEPEEKPSVSTKPAPDYYAAIPYD 501
Query: 492 ENLD-FVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSHDLTELKTLRI 551
L ++ +K+DE+I+ L+ ++K+L++++++ DWA+QK QA +L D ELK LR
Sbjct: 502 ATLGIYIPRNKRDELILKLVPRMKDLQKELQDWTDWANQKVKQATVRLLKDQPELKALRK 561
Query: 552 EREETQRMKNGKPTLEDTTMKRLSEMENALRKASGQVDRANSTVRRLETENAEIRAEMEA 611
E+EE + + K LE+ T+KR SEME AL A+ Q++R N+T+RRLE E + ++ E EA
Sbjct: 562 EKEEAEEFRKEKQLLEENTIKRRSEMELALNNATNQLERTNNTIRRLELEQSLLKREREA 621
Query: 612 LKLSASESVTTCLEVAKREKKSLKRLLAWEKQKTKLQEQIAEEKDKISRLQDEMEMIKVA 671
+ ASES +C E +R ++ LK +WE QK LQE++ ++DK++ LQ E+ K
Sbjct: 622 ANIRASESAESCREAKERVQRLLKNSQSWEGQKNLLQEELKSQRDKVAGLQQEVAKAKTR 681
Query: 672 QKEAEARWRQELNAKEAAMAQVEDERLRKEAAEASSKRKLEALRLKIEIDFQRHKDDLQR 731
Q + EA W+QE +A AQ + + E K + E ++ K E D + + ++++R
Sbjct: 682 QNQIEATWKQEKSATGKLTAQAAALKKERGKLEELGKAEEERIKTKAENDVKYYIENIKR 741
Query: 732 LEQELLRLKASAQSID---SHQPSSNTPRGNSEGVKPQGETIAKMLRELDSYE--ESTEE 761
L+ E+ +LK + S+ + GN G+ T A + +E + E
Sbjct: 742 LDTEISKLKLKSDSLKIAALKKGIDGNNDGNKSGMNHTTNTKANSMASAKVWENNQGAES 801
BLAST of CmaCh16G011470 vs. ExPASy Swiss-Prot
Match:
Q9ZVT8 (Putative E3 ubiquitin-protein ligase RF4 OS=Arabidopsis thaliana OX=3702 GN=RF4 PE=3 SV=1)
HSP 1 Score: 200.3 bits (508), Expect = 7.9e-50
Identity = 212/791 (26.80%), Postives = 352/791 (44.50%), Query Frame = 0
Query: 84 LEEILMKNLQFVYTEAISKLVALGYDEDAAMRAILQNGHCYGTMDVLTNVLHNSLSFLNG 143
LEE+L NL ++ + + +L+ LGY +D ++A+ + G ++L+N+++N+LS L
Sbjct: 97 LEELLSSNLLTLFLDTMKQLIDLGYTDDEVLKAVSRCRLYCGGNNLLSNIVNNTLSALK- 156
Query: 144 NNNSDSASSEAVAAASAAAAAAAAAASADGVGIGPIGNGNGIAIDNVNANLVVDDPEPAF 203
G G G+G + F
Sbjct: 157 --------------------------------TGDEGAGSG---------------DYVF 216
Query: 204 SDIRQLQEYSLAGMVCLLQQVRPQLTKGDAMWCLLMSDLHVGRASTMEIPVLPSAPSNVN 263
D++QL Y+L M+ L+++VRP L+ +AMW LLM DL+V +A E L S+ +
Sbjct: 217 EDLQQLVSYTLVEMISLIKEVRPSLSTVEAMWRLLMCDLNVLQAFEAEGDGLVSSSKLSD 276
Query: 264 GDASGGNG------------------ENVSNQPVGF----LEPSLCKFHGGS---GFGNS 323
++ G ++ N+P+ F P+ K G
Sbjct: 277 SESLGAESNPPKSSDPDNPKPPQSDPQSNRNEPLKFGNFPNTPNSKKTQSSGTTPGKEVC 336
Query: 324 GGSEFSANGFLSYS------------------PDMDLHRDIECPKR---FNLSPSMKSLL 383
GS S G S S ++ + R C ++ ++ K+
Sbjct: 337 SGSTVSCQGMRSTSFTLVSDEKLVSCRKGRTKKEIAMLRQKSCVEKIRTYSKGSGYKAAK 396
Query: 384 KRNVAAFAAGFRANS-------------------KHLTAQTQACATVLPSEI-PPVV--- 443
+V +F R S K A+ C S++ PVV
Sbjct: 397 FASVGSFLLEKRVKSSSEFVPRNSSSKITAEIGVKVSLAEDSGCFVRKNSKLDSPVVVVD 456
Query: 444 -----------------------QGASVVP--VEKSEESQIPKNQDAVNSMLNKFR---D 503
+ +++P EK +S IP + + ++ +
Sbjct: 457 AKGYITALPARSVKSASKKKTGSESVTLIPSASEKKSDSSIPSTSEKKSGSESEEKASVS 516
Query: 504 LKI----YENLD-------FVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAAR 563
K+ Y + +V DKKDE+I+ L+ ++ +L+ +++ DWA+QK +A
Sbjct: 517 AKLAPDYYAGIPYDAALGIYVPRDKKDELILKLVPRVNDLQNELQVWTDWANQKVKEATG 576
Query: 564 KLSHDLTELKTLRIEREETQRMKNGKPTLEDTTMKRLSEMENALRKASGQVDRANSTVRR 623
+L D ELK LR EREE ++ K K LE+ T KRLSEM+ AL+ A+ Q+++A +T R
Sbjct: 577 RLLKDQPELKALRKEREEAEQYKKEKQLLEENTRKRLSEMDFALKNATSQLEKAFNTAHR 636
Query: 624 LETENAEIRAEMEALKLSASESVTTCLEVAKREKKSLKRLLAWEKQKTKLQEQIAEEKDK 683
LE E + ++ EMEA K+ A ES + E +R ++SLK + +WE QK LQE++ +++K
Sbjct: 637 LELEQSILKKEMEAAKIKAVESAESFREAKERGERSLKDIHSWEGQKIMLQEELKGQREK 696
Query: 684 ISRLQDEMEMIKVAQKEAEARWRQELNAKEAAMAQVEDERLRKEAAEASSKRKLEALRLK 743
++ LQ E+ K Q + EA +QE AK AQ R + EA K + E ++ K
Sbjct: 697 VTVLQKEVTKAKNRQNQIEAALKQERTAKGKLSAQASLIRKETKELEALGKVEEERIKGK 756
Query: 744 IEIDFQRHKDDLQRLEQELLRLKASAQSIDSHQPSSNTPRGNSEGVKPQGETIAKMLREL 767
E D + + D+++RLE+E+ LK + + +G+SE + E++
Sbjct: 757 AETDVKYYIDNIKRLEREISELKLKS----DYSRIIALKKGSSESKATKRESLGM----- 816
BLAST of CmaCh16G011470 vs. TAIR 10
Match:
AT2G35330.1 (RING/U-box superfamily protein )
HSP 1 Score: 765.8 bits (1976), Expect = 3.4e-221
Identity = 431/772 (55.83%), Postives = 547/772 (70.85%), Query Frame = 0
Query: 1 MGCTVRDKHVRTNRRPRSVKPEFDPCCHQERASLPKSVLESGSKPLDYHIGLDDSNQDNA 60
MGCTVR+KHVR NR+ RSVKPEFDPCC +R +L KS++ES K L YH GL DS +
Sbjct: 28 MGCTVREKHVRPNRKTRSVKPEFDPCCLLDRTALSKSIVESSLKHLVYHPGLLDSCPE-- 87
Query: 61 VTSNCNSGSSLDDLGWGYCTEEQLEEILMKNLQFVYTEAISKLVALGYDEDAAMRAILQN 120
SN SGS D+ GWGYCTEEQLE+IL+K+L+++Y EAISKLV GYDED A+RA+L N
Sbjct: 88 --SN-PSGSFEDNNGWGYCTEEQLEDILLKHLEYLYNEAISKLVGSGYDEDVALRAVLSN 147
Query: 121 GHCYGTMDVLTNVLHNSLSFLNGNNNSDSASSEAVAAASAAAAAAAAAASADGVGIGPIG 180
G+CYG MDV+TN+LHNSL++L N S
Sbjct: 148 GYCYGGMDVMTNILHNSLAYLKSNTGEGS------------------------------- 207
Query: 181 NGNGIAIDNVNANLVVDDPEPAFSDIRQLQEYSLAGMVCLLQQVRPQLTKGDAMWCLLMS 240
NVN D E F+D+RQL+EYSLAGMV LLQQV+P L+KGDAMWCLLMS
Sbjct: 208 --------NVNNE---DQSETVFTDLRQLEEYSLAGMVYLLQQVKPNLSKGDAMWCLLMS 267
Query: 241 DLHVGRASTMEIPVLPSAPSNVNGDASG---GNGENVSNQPVGFLEPSLCKFHGGSGFGN 300
+LHVGRASTM+I PS+ GD+S G + N G + P+LC+FHGG GFGN
Sbjct: 268 ELHVGRASTMDI------PSSGKGDSSNVGVGGASSTVNGVGGAIAPALCRFHGGWGFGN 327
Query: 301 SGGSEFSANGFLSYSPDMDLHRDIECPKRFNLSPSMKSLLKRNVAAFAAGFRAN---SKH 360
G +FS NGF +S ++ L R+I+CP+RFNLSPSMKSLL+ NVAAFAAG+RA+ K
Sbjct: 328 GKGPKFSGNGFSLHSEELTLQREIDCPRRFNLSPSMKSLLRENVAAFAAGYRASMEQKKQ 387
Query: 361 LTAQTQACATVLPSEIPPVVQGASVVPVEKSEESQIPKNQDAVNSMLNKFRDLKIYENLD 420
+ Q++ T L A+ EK E+ + +++ +S+L KFRDL + +N+D
Sbjct: 388 VQMQSETSGTSLSCT-------AAATHSEKCEQPHVFGSEECFSSVLEKFRDLNLDDNVD 447
Query: 421 FVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSHDLTELKTLRIEREET 480
++ KD+ ++ LL Q+++L++Q+KERKDWA +KAMQAA+K+S +L+ELK+LR EREE
Sbjct: 448 SAPEELKDDALIGLLQQVQDLKKQLKERKDWAQKKAMQAAQKVSDELSELKSLRSEREEI 507
Query: 481 QRMKNGKPTLEDTTMKRLSEMENALRKASGQVDRANSTVRRLETENAEIRAEMEALKLSA 540
QR+K GK T ED+T+K+LSEMENALRKASGQVD+AN+ VR LE E+AEIRAEMEA KLSA
Sbjct: 508 QRVKKGKQTREDSTLKKLSEMENALRKASGQVDKANAVVRALENESAEIRAEMEASKLSA 567
Query: 541 SESVTTCLEVAKREKKSLKRLLAWEKQKTKLQEQIAEEKDKISRLQDEMEMIKVAQKEAE 600
SES+T C+E +K+EKK LK+LLAWEKQK KLQ++I EK+KI L + I +KE E
Sbjct: 568 SESLTACMEASKKEKKCLKKLLAWEKQKMKLQDEITAEKEKIKALNRALAQITQEEKEYE 627
Query: 601 ARWRQELNAKEAAMAQVEDERLRKEAAEASSKRKLEALRLKIEIDFQRHKDDLQRLEQEL 660
A+WRQE AKE +AQVE+E+ KEA EAS+KRK+E+LRLKIEIDFQRHKDDLQRLEQEL
Sbjct: 628 AKWRQEQKAKEQVLAQVEEEQRSKEAIEASNKRKVESLRLKIEIDFQRHKDDLQRLEQEL 687
Query: 661 LRLKASAQSIDSHQPSSNTPRGNSEGVKPQGETIAKMLRELDSYEESTEEGVNHDRECMI 720
RL A S DS S+NT + K +GET++K+L EL+ + S E+ N+DREC+I
Sbjct: 688 SRLN-KASSTDSSLQSNNTSHTKVKSDKSKGETMSKLLEELNRLDGSYEKEANYDRECLI 738
Query: 721 CMRGEVSIVFLPCAHQVLCASCSDSYGKKGKAACPCCRVPIEQRIRVFGASS 767
CM+ EVS+VFLPCAHQV+CASCSDS+ GKA CPCCR P++QRIRVFGASS
Sbjct: 748 CMKDEVSVVFLPCAHQVVCASCSDSFMGSGKATCPCCRAPVQQRIRVFGASS 738
BLAST of CmaCh16G011470 vs. TAIR 10
Match:
AT2G35330.2 (RING/U-box superfamily protein )
HSP 1 Score: 765.8 bits (1976), Expect = 3.4e-221
Identity = 431/772 (55.83%), Postives = 547/772 (70.85%), Query Frame = 0
Query: 1 MGCTVRDKHVRTNRRPRSVKPEFDPCCHQERASLPKSVLESGSKPLDYHIGLDDSNQDNA 60
MGCTVR+KHVR NR+ RSVKPEFDPCC +R +L KS++ES K L YH GL DS +
Sbjct: 1 MGCTVREKHVRPNRKTRSVKPEFDPCCLLDRTALSKSIVESSLKHLVYHPGLLDSCPE-- 60
Query: 61 VTSNCNSGSSLDDLGWGYCTEEQLEEILMKNLQFVYTEAISKLVALGYDEDAAMRAILQN 120
SN SGS D+ GWGYCTEEQLE+IL+K+L+++Y EAISKLV GYDED A+RA+L N
Sbjct: 61 --SN-PSGSFEDNNGWGYCTEEQLEDILLKHLEYLYNEAISKLVGSGYDEDVALRAVLSN 120
Query: 121 GHCYGTMDVLTNVLHNSLSFLNGNNNSDSASSEAVAAASAAAAAAAAAASADGVGIGPIG 180
G+CYG MDV+TN+LHNSL++L N S
Sbjct: 121 GYCYGGMDVMTNILHNSLAYLKSNTGEGS------------------------------- 180
Query: 181 NGNGIAIDNVNANLVVDDPEPAFSDIRQLQEYSLAGMVCLLQQVRPQLTKGDAMWCLLMS 240
NVN D E F+D+RQL+EYSLAGMV LLQQV+P L+KGDAMWCLLMS
Sbjct: 181 --------NVNNE---DQSETVFTDLRQLEEYSLAGMVYLLQQVKPNLSKGDAMWCLLMS 240
Query: 241 DLHVGRASTMEIPVLPSAPSNVNGDASG---GNGENVSNQPVGFLEPSLCKFHGGSGFGN 300
+LHVGRASTM+I PS+ GD+S G + N G + P+LC+FHGG GFGN
Sbjct: 241 ELHVGRASTMDI------PSSGKGDSSNVGVGGASSTVNGVGGAIAPALCRFHGGWGFGN 300
Query: 301 SGGSEFSANGFLSYSPDMDLHRDIECPKRFNLSPSMKSLLKRNVAAFAAGFRAN---SKH 360
G +FS NGF +S ++ L R+I+CP+RFNLSPSMKSLL+ NVAAFAAG+RA+ K
Sbjct: 301 GKGPKFSGNGFSLHSEELTLQREIDCPRRFNLSPSMKSLLRENVAAFAAGYRASMEQKKQ 360
Query: 361 LTAQTQACATVLPSEIPPVVQGASVVPVEKSEESQIPKNQDAVNSMLNKFRDLKIYENLD 420
+ Q++ T L A+ EK E+ + +++ +S+L KFRDL + +N+D
Sbjct: 361 VQMQSETSGTSLSCT-------AAATHSEKCEQPHVFGSEECFSSVLEKFRDLNLDDNVD 420
Query: 421 FVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSHDLTELKTLRIEREET 480
++ KD+ ++ LL Q+++L++Q+KERKDWA +KAMQAA+K+S +L+ELK+LR EREE
Sbjct: 421 SAPEELKDDALIGLLQQVQDLKKQLKERKDWAQKKAMQAAQKVSDELSELKSLRSEREEI 480
Query: 481 QRMKNGKPTLEDTTMKRLSEMENALRKASGQVDRANSTVRRLETENAEIRAEMEALKLSA 540
QR+K GK T ED+T+K+LSEMENALRKASGQVD+AN+ VR LE E+AEIRAEMEA KLSA
Sbjct: 481 QRVKKGKQTREDSTLKKLSEMENALRKASGQVDKANAVVRALENESAEIRAEMEASKLSA 540
Query: 541 SESVTTCLEVAKREKKSLKRLLAWEKQKTKLQEQIAEEKDKISRLQDEMEMIKVAQKEAE 600
SES+T C+E +K+EKK LK+LLAWEKQK KLQ++I EK+KI L + I +KE E
Sbjct: 541 SESLTACMEASKKEKKCLKKLLAWEKQKMKLQDEITAEKEKIKALNRALAQITQEEKEYE 600
Query: 601 ARWRQELNAKEAAMAQVEDERLRKEAAEASSKRKLEALRLKIEIDFQRHKDDLQRLEQEL 660
A+WRQE AKE +AQVE+E+ KEA EAS+KRK+E+LRLKIEIDFQRHKDDLQRLEQEL
Sbjct: 601 AKWRQEQKAKEQVLAQVEEEQRSKEAIEASNKRKVESLRLKIEIDFQRHKDDLQRLEQEL 660
Query: 661 LRLKASAQSIDSHQPSSNTPRGNSEGVKPQGETIAKMLRELDSYEESTEEGVNHDRECMI 720
RL A S DS S+NT + K +GET++K+L EL+ + S E+ N+DREC+I
Sbjct: 661 SRLN-KASSTDSSLQSNNTSHTKVKSDKSKGETMSKLLEELNRLDGSYEKEANYDRECLI 711
Query: 721 CMRGEVSIVFLPCAHQVLCASCSDSYGKKGKAACPCCRVPIEQRIRVFGASS 767
CM+ EVS+VFLPCAHQV+CASCSDS+ GKA CPCCR P++QRIRVFGASS
Sbjct: 721 CMKDEVSVVFLPCAHQVVCASCSDSFMGSGKATCPCCRAPVQQRIRVFGASS 711
BLAST of CmaCh16G011470 vs. TAIR 10
Match:
AT1G32530.1 (RING/U-box superfamily protein )
HSP 1 Score: 665.6 bits (1716), Expect = 4.7e-191
Identity = 398/781 (50.96%), Postives = 517/781 (66.20%), Query Frame = 0
Query: 1 MGCTVRDKHVRTNRRPRSVKPEFD-PCCHQERASLPKSVLESGSKPLDYHIGLDDSNQD- 60
MGCTVR+KHV+ RR ++ D P C E+ ++ +S++E+ L YH GL DS
Sbjct: 1 MGCTVREKHVKPTRRIKAAAFRSDPPLCWVEKIAMSQSIVEN----LVYHPGLTDSGSVN 60
Query: 61 -NAVTSNCNSGSSLDDLGWGYCTEEQLEEILMKNLQFVYTEAISKLVALGYDEDAAMRAI 120
N+VT N ++ W YCTEE LEEIL+K+L+F+Y +A+SKL+ LGY+E A++A+
Sbjct: 61 LNSVTEN------PEENFWAYCTEEHLEEILLKHLEFLYNQAVSKLLELGYEERVALKAV 120
Query: 121 LQNGHCYGTMDVLTNVLHNSLSFLNGNNNSDSASSEAVAAASAAAAAAAAAASADGVGIG 180
L NGHCYG +DVLTN+++NSLS+LN + G G G
Sbjct: 121 LSNGHCYGELDVLTNIVNNSLSYLN----------------------------SGGGGGG 180
Query: 181 PIGNGNGIAIDNVNANLVVDDPEPAFSDIRQLQEYSLAGMVCLLQQVRPQLTKGDAMWCL 240
GNG D E F+D+R L+EYSLAGM+ LLQQV+P L+KGDAMWCL
Sbjct: 181 SNGNGE-------------DRTETGFTDLRDLEEYSLAGMIYLLQQVKPNLSKGDAMWCL 240
Query: 241 LMSDLHVGRASTMEIPVLPSA-----PSNVNGDASGGNGENVSNQPVGFLEPSLCKFHGG 300
LMS+LHVGRAST+++P S+ SNV +GG + GF+ P+LC+FHGG
Sbjct: 241 LMSELHVGRASTLDVPTNRSSCCTKEDSNVEDVGTGG-----TLDIAGFMAPALCRFHGG 300
Query: 301 SGFGNSGGSEFSANGFLSYSPDMDLHRDIECPKRFNLSPSMKSLLKRNVAAFAAGFRANS 360
GFGN GG EFS NGF ++ L R+I+CPKRFNLSPSMKSLLKRNVAAFAAG+RA+
Sbjct: 301 WGFGNGGGPEFSGNGFSMKGAELKLQREIDCPKRFNLSPSMKSLLKRNVAAFAAGYRASM 360
Query: 361 KHLTAQTQACATVLPSEI---PPVVQGASVVPVEKSEESQIPKNQDAVNSMLNKFRDLKI 420
K Q Q+ T+ S+ P +V+ P + E ++V+++L KFRDL +
Sbjct: 361 KQ--KQIQSSDTIGDSKACNDPAIVKSCGQQPRKSGSE-------ESVSTVLEKFRDLNL 420
Query: 421 YENLDFVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSHDLTELKTLRI 480
+NL+ V D KD VIV+LLHQ+K+ E++VKERK+WA + AMQAA+K+S +L ELKTL
Sbjct: 421 DDNLESVGVDDKDCVIVDLLHQVKDFEKKVKERKEWAQKNAMQAAQKVSEELAELKTLSS 480
Query: 481 EREETQRMKNGKPTLEDTTMKRLSEMENALRKASGQVDRANSTVRRLETENAEIRAEMEA 540
ERE Q +K GK +E++T KR ++ E LRKA Q DRAN VR+LE +NAEIRAE E
Sbjct: 481 EREGIQLLKKGKQAVEESTAKRFTDKEIELRKACSQNDRANVIVRKLENQNAEIRAEREG 540
Query: 541 LKLSASESVTTCLEVAKREKKSLKRLLAWEKQKTKLQEQIAEEKDKISRLQDEMEMIKVA 600
KLSASES+ C+E +K+EKK LK+L+AWEKQ KLQ++I EK+KI L + I
Sbjct: 541 SKLSASESLKACMEASKKEKKCLKKLVAWEKQILKLQDEITAEKEKIKALYKTLAQITEY 600
Query: 601 QKEAEARWRQELNAKEAAMAQVEDERLRKEAAEASSKRKLEALRLKIEIDFQRHKDDLQR 660
+KE EA+WRQE AKE A+AQ+E+E+ KEAAE +KRKLE LRLKIE+DFQRHKDD QR
Sbjct: 601 EKEIEAKWRQEQKAKEEALAQMEEEQRSKEAAEGHNKRKLETLRLKIELDFQRHKDDHQR 660
Query: 661 LEQELLRLKASAQSIDSHQPSSNTPRGNSEGVKPQGETIAKMLRELDSYEESTEEGVNHD 720
LEQEL RLKAS+ S DS S+N + K QGE IAK+L E+D E S + N+D
Sbjct: 661 LEQELGRLKASSDS-DSSHISNNAWKPK----KSQGENIAKLLEEIDKLEGSYDNEANYD 711
Query: 721 RECMICMRGEVSIVFLPCAHQVLCASCSDSY----GKKGKAACPCCRVPIEQRIRVFGAS 767
REC+ICM+ EVS+VFLPCAHQV+C SCSDS+ K CPCCR ++QRIR+FGA+
Sbjct: 721 RECIICMKDEVSVVFLPCAHQVVCGSCSDSFFASNNGGSKVTCPCCRGLVQQRIRIFGAT 711
BLAST of CmaCh16G011470 vs. TAIR 10
Match:
AT4G03000.1 (RING/U-box superfamily protein )
HSP 1 Score: 221.5 bits (563), Expect = 2.4e-57
Identity = 212/776 (27.32%), Postives = 366/776 (47.16%), Query Frame = 0
Query: 72 DDLGWGYCTEEQLEEILMKNLQFVYTEAISKLVALGYDEDAAMRAILQNGHCYGTMDVLT 131
D +GW LE +L NL ++ A+++++ GY ED ++AI + G D+++
Sbjct: 82 DSVGWDDPFACHLEGLLSSNLLTLFRSAMNQIMDCGYSEDVVLKAISSSRFYCGGTDLVS 141
Query: 132 NVLHNSLSFLNGNNNSDSASSEAVAAASAAAAAAAAAASADGVGIGPIGNGNGIAIDNVN 191
N+++++LSFL A S D V
Sbjct: 142 NIVNDTLSFLKSGKK--------------------VAGSRDYV----------------- 201
Query: 192 ANLVVDDPEPAFSDIRQLQEYSLAGMVCLLQQVRPQLTKGDAMWCLLMSDLHVGRA---- 251
F D++QL YSL + L+++VRP L+ +AMW LL+ DL+V +A
Sbjct: 202 -----------FEDLQQLVAYSLVEKISLVREVRPSLSTDEAMWRLLICDLNVLKAFEVD 261
Query: 252 -------------STMEIPVL----PSAPSNVNGDASGGNGENVSNQPVGF-----LEPS 311
+ E PV P + N A N ++ ++PV F + S
Sbjct: 262 ADGLEGSSVSNASKSSESPVAECNPPKSSDADNPKAPVSNTQSKQSEPVKFGNFANVNNS 321
Query: 312 LCKFHGGSGFGNSGGSEFSANGFLSYSPDMDLHRD---IECPK-RFNLSPSM---KSLLK 371
G+ G S +A+G + S + D + C K R +M KS ++
Sbjct: 322 KNPHASGATPGKEVFSVSTASGEGTKSASLTSVSDEKLVSCRKGRTKKEMAMLRQKSCVE 381
Query: 372 R----------NVAAFAAGF------RANSKHLTAQTQACATVLPSEIP--PVVQGASVV 431
+ A F GF ++ S L+AQ + ++ + +E+ P+ + +S +
Sbjct: 382 KIRTYSKGGGYKTAKF-GGFLVEKRGKSASDLLSAQARNSSSKITTEVMKIPLAESSSTL 441
Query: 432 ---------------------------PVEKSEES-QIPKNQDAVNS--MLNKFRDLKIY 491
PV ++S P+ + +V++ + + +
Sbjct: 442 SNSTKSDSPALDVKEHVTALPANNAPAPVASEKKSGSEPEEKPSVSTKPAPDYYAAIPYD 501
Query: 492 ENLD-FVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSHDLTELKTLRI 551
L ++ +K+DE+I+ L+ ++K+L++++++ DWA+QK QA +L D ELK LR
Sbjct: 502 ATLGIYIPRNKRDELILKLVPRMKDLQKELQDWTDWANQKVKQATVRLLKDQPELKALRK 561
Query: 552 EREETQRMKNGKPTLEDTTMKRLSEMENALRKASGQVDRANSTVRRLETENAEIRAEMEA 611
E+EE + + K LE+ T+KR SEME AL A+ Q++R N+T+RRLE E + ++ E EA
Sbjct: 562 EKEEAEEFRKEKQLLEENTIKRRSEMELALNNATNQLERTNNTIRRLELEQSLLKREREA 621
Query: 612 LKLSASESVTTCLEVAKREKKSLKRLLAWEKQKTKLQEQIAEEKDKISRLQDEMEMIKVA 671
+ ASES +C E +R ++ LK +WE QK LQE++ ++DK++ LQ E+ K
Sbjct: 622 ANIRASESAESCREAKERVQRLLKNSQSWEGQKNLLQEELKSQRDKVAGLQQEVAKAKTR 681
Query: 672 QKEAEARWRQELNAKEAAMAQVEDERLRKEAAEASSKRKLEALRLKIEIDFQRHKDDLQR 731
Q + EA W+QE +A AQ + + E K + E ++ K E D + + ++++R
Sbjct: 682 QNQIEATWKQEKSATGKLTAQAAALKKERGKLEELGKAEEERIKTKAENDVKYYIENIKR 741
Query: 732 LEQELLRLKASAQSID---SHQPSSNTPRGNSEGVKPQGETIAKMLRELDSYE--ESTEE 761
L+ E+ +LK + S+ + GN G+ T A + +E + E
Sbjct: 742 LDTEISKLKLKSDSLKIAALKKGIDGNNDGNKSGMNHTTNTKANSMASAKVWENNQGAES 801
BLAST of CmaCh16G011470 vs. TAIR 10
Match:
AT4G03000.2 (RING/U-box superfamily protein )
HSP 1 Score: 221.5 bits (563), Expect = 2.4e-57
Identity = 212/776 (27.32%), Postives = 366/776 (47.16%), Query Frame = 0
Query: 72 DDLGWGYCTEEQLEEILMKNLQFVYTEAISKLVALGYDEDAAMRAILQNGHCYGTMDVLT 131
D +GW LE +L NL ++ A+++++ GY ED ++AI + G D+++
Sbjct: 82 DSVGWDDPFACHLEGLLSSNLLTLFRSAMNQIMDCGYSEDVVLKAISSSRFYCGGTDLVS 141
Query: 132 NVLHNSLSFLNGNNNSDSASSEAVAAASAAAAAAAAAASADGVGIGPIGNGNGIAIDNVN 191
N+++++LSFL A S D V
Sbjct: 142 NIVNDTLSFLKSGKK--------------------VAGSRDYV----------------- 201
Query: 192 ANLVVDDPEPAFSDIRQLQEYSLAGMVCLLQQVRPQLTKGDAMWCLLMSDLHVGRA---- 251
F D++QL YSL + L+++VRP L+ +AMW LL+ DL+V +A
Sbjct: 202 -----------FEDLQQLVAYSLVEKISLVREVRPSLSTDEAMWRLLICDLNVLKAFEVD 261
Query: 252 -------------STMEIPVL----PSAPSNVNGDASGGNGENVSNQPVGF-----LEPS 311
+ E PV P + N A N ++ ++PV F + S
Sbjct: 262 ADGLEGSSVSNASKSSESPVAECNPPKSSDADNPKAPVSNTQSKQSEPVKFGNFANVNNS 321
Query: 312 LCKFHGGSGFGNSGGSEFSANGFLSYSPDMDLHRD---IECPK-RFNLSPSM---KSLLK 371
G+ G S +A+G + S + D + C K R +M KS ++
Sbjct: 322 KNPHASGATPGKEVFSVSTASGEGTKSASLTSVSDEKLVSCRKGRTKKEMAMLRQKSCVE 381
Query: 372 R----------NVAAFAAGF------RANSKHLTAQTQACATVLPSEIP--PVVQGASVV 431
+ A F GF ++ S L+AQ + ++ + +E+ P+ + +S +
Sbjct: 382 KIRTYSKGGGYKTAKF-GGFLVEKRGKSASDLLSAQARNSSSKITTEVMKIPLAESSSTL 441
Query: 432 ---------------------------PVEKSEES-QIPKNQDAVNS--MLNKFRDLKIY 491
PV ++S P+ + +V++ + + +
Sbjct: 442 SNSTKSDSPALDVKEHVTALPANNAPAPVASEKKSGSEPEEKPSVSTKPAPDYYAAIPYD 501
Query: 492 ENLD-FVADDKKDEVIVNLLHQIKELERQVKERKDWAHQKAMQAARKLSHDLTELKTLRI 551
L ++ +K+DE+I+ L+ ++K+L++++++ DWA+QK QA +L D ELK LR
Sbjct: 502 ATLGIYIPRNKRDELILKLVPRMKDLQKELQDWTDWANQKVKQATVRLLKDQPELKALRK 561
Query: 552 EREETQRMKNGKPTLEDTTMKRLSEMENALRKASGQVDRANSTVRRLETENAEIRAEMEA 611
E+EE + + K LE+ T+KR SEME AL A+ Q++R N+T+RRLE E + ++ E EA
Sbjct: 562 EKEEAEEFRKEKQLLEENTIKRRSEMELALNNATNQLERTNNTIRRLELEQSLLKREREA 621
Query: 612 LKLSASESVTTCLEVAKREKKSLKRLLAWEKQKTKLQEQIAEEKDKISRLQDEMEMIKVA 671
+ ASES +C E +R ++ LK +WE QK LQE++ ++DK++ LQ E+ K
Sbjct: 622 ANIRASESAESCREAKERVQRLLKNSQSWEGQKNLLQEELKSQRDKVAGLQQEVAKAKTR 681
Query: 672 QKEAEARWRQELNAKEAAMAQVEDERLRKEAAEASSKRKLEALRLKIEIDFQRHKDDLQR 731
Q + EA W+QE +A AQ + + E K + E ++ K E D + + ++++R
Sbjct: 682 QNQIEATWKQEKSATGKLTAQAAALKKERGKLEELGKAEEERIKTKAENDVKYYIENIKR 741
Query: 732 LEQELLRLKASAQSID---SHQPSSNTPRGNSEGVKPQGETIAKMLRELDSYE--ESTEE 761
L+ E+ +LK + S+ + GN G+ T A + +E + E
Sbjct: 742 LDTEISKLKLKSDSLKIAALKKGIDGNNDGNKSGMNHTTNTKANSMASAKVWENNQGAES 801
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q8RX22 | 6.7e-190 | 50.96 | MND1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=MIP1 PE=1 SV=1 | [more] |
Q0WPJ7 | 3.3e-56 | 27.32 | Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana OX=3702 GN=RF... | [more] |
Q9ZVT8 | 7.9e-50 | 26.80 | Putative E3 ubiquitin-protein ligase RF4 OS=Arabidopsis thaliana OX=3702 GN=RF4 ... | [more] |