CmaCh16G011430 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G011430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	HMA domain-containing protein
Location	Cma_Chr16: 8776941 .. 8777702 (-)
RNA-Seq Expression	CmaCh16G011430
Synteny	CmaCh16G011430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAATAAGCCGCCTAAGAACTTAGATGGAAATGTTCAGAAGCATCATCCATGGCTGCCTAACAAGAGAGAGAAAATAGAGAGAGAAAGTCAAGAACTTTGACGAACAGAGCCAAGAATGGAGCAATCTTTGTTGTTTTCTGAGGATCTTACGCCCCCTTCTGTAAGATTTTTCAAATATGTTCTTGTTTTTTTTGGTAAATTTCTTAGAATAATATGTATTTTTGTGAGATTATATTATATATTTCATTCAAAGATTTATAATTTTTGGTTTTGGTTTGGTAGTTTCAGGTAATTGTTATAAATGCAAATATGAGTTGCAATGGGTGTCGCCAAAGAGTTTCTCAACTTCTCTCTAAAATCTCTGGTTCGTATATTTTTTTGATCCCGTCTCTTCAATTAACTATTTATCTGTTTCGTCATATAAATTAAATCAAAGTATGGTCTATAATTTGTGAATTTGAACTTAGAGATATTTTTTTTGTTGTCTTAATATGCAGAGTTAGTCGAGTTCACCATAGATGTGACAAAAAAACAAGTGGTTGTAAAAGGAAATGTGAAATTCCAAGGCAAGATTCACGAAGAAGATAGTATCCATTCCCAAACCTACAACTCCAATTCTCTAAAATCCCAATCCCTCTCCCATCAGTATTCAAACGATTGCTTTTAAATTGATTTTTATTTATTTATTATAATCTACGTAGGTATCACATTTACTCAAGTTATCATTGTATTTATATATCTAACTCGAACCACAAGATT

mRNA sequence

ATTTAATAAGCCGCCTAAGAACTTAGATGGAAATGTTCAGAAGCATCATCCATGGCTGCCTAACAAGAGAGAGAAAATAGAGAGAGAAAGTCAAGAACTTTGACGAACAGAGCCAAGAATGGAGCAATCTTTGTTGTTTTCTGAGGATCTTACGCCCCCTTCTTTTCAGGTAATTGTTATAAATGCAAATATGAGTTGCAATGGGTGTCGCCAAAGAGTTTCTCAACTTCTCTCTAAAATCTCTGAGTTAGTCGAGTTCACCATAGATGTGACAAAAAAACAAGTGGTTGTAAAAGGAAATGTGAAATTCCAAGGCAAGATTCACGAAGAAGATAGTATCCATTCCCAAACCTACAACTCCAATTCTCTAAAATCCCAATCCCTCTCCCATCAGTATTCAAACGATTGCTTTTAAATTGATTTTTATTTATTTATTATAATCTACGTAGGTATCACATTTACTCAAGTTATCATTGTATTTATATATCTAACTCGAACCACAAGATT

Coding sequence (CDS)

ATGGAGCAATCTTTGTTGTTTTCTGAGGATCTTACGCCCCCTTCTTTTCAGGTAATTGTTATAAATGCAAATATGAGTTGCAATGGGTGTCGCCAAAGAGTTTCTCAACTTCTCTCTAAAATCTCTGAGTTAGTCGAGTTCACCATAGATGTGACAAAAAAACAAGTGGTTGTAAAAGGAAATGTGAAATTCCAAGGCAAGATTCACGAAGAAGATAGTATCCATTCCCAAACCTACAACTCCAATTCTCTAAAATCCCAATCCCTCTCCCATCAGTATTCAAACGATTGCTTTTAA

Protein sequence

MEQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVKFQGKIHEEDSIHSQTYNSNSLKSQSLSHQYSNDCF

Homology

[Close]

BLAST of CmaCh16G011430 vs. TAIR 10
Match: AT2G35730.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 7.6e-09
Identity = 25/61 (40.98%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 3  QSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNV 62
          ++L+  E L+ PSFQVI INA++ C  C+ RVS+++SK++ + E+ +D+ KK V+ +G+ 
Sbjct: 9  RTLMLCEKLSLPSFQVIEINADVGCVACQDRVSKIVSKMTGIEEYVVDLKKKLVMARGDF 68

Query: 63 K 64
          +
Sbjct: 69 R 69

[Close]

BLAST of CmaCh16G011430 vs. TAIR 10
Match: AT3G56240.1 (copper chaperone )

HSP 1 Score: 43.9 bits (102), Expect = 8.7e-05
Identity = 19/47 (40.43%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 17 QVIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVK 64
          Q +V+   MSC GC   V+++L K+  +  F ID+ +++V VKGNV+
Sbjct: 3  QTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVE 49

[Close]

BLAST of CmaCh16G011430 vs. TAIR 10
Match: AT1G66240.1 (homolog of anti-oxidant 1 )

HSP 1 Score: 41.2 bits (95), Expect = 5.6e-04
Identity = 17/47 (36.17%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 17 QVIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGNVK 64
          Q +V+   M+C GC   V ++L K+  +  F +D+ +++V VKGNV+
Sbjct: 33 QTVVLRVAMTCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVQ 79

[Close]

BLAST of CmaCh16G011430 vs. TAIR 10
Match: AT5G27690.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 40.4 bits (93), Expect = 9.6e-04
Identity = 26/98 (26.53%), Postives = 53/98 (54.08%), Query Frame = 0


Query: 2   EQSLLFSEDLTPPSFQVIVINANMSCNGCRQRVSQLLSKISELVEFTIDVTKKQVVVKGN 61
           EQ  +F +   P  +   V+  ++ C GC++++ ++LSKI  +    IDV +++V V GN
Sbjct: 15  EQRHVFEDYPEPLRYTTWVLRVSIHCEGCKRKIKKILSKIDGVYTTNIDVKQQKVTVIGN 74

Query: 62  VKFQGKIHE--EDSIHSQTYNSNSLKSQSLSHQYSNDC 98
           V+ +  I +  +   H++ + +      S+ +  +NDC
Sbjct: 75  VEPEILIKKIMKAGRHAELWPT------SMENNINNDC 106

The following BLAST results are available for this feature:

BLAST of CmaCh16G011430 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G011430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35730.1	7.6e-09	40.98	Heavy metal transport/detoxification superfamily protein	[more]
AT3G56240.1	8.7e-05	40.43	copper chaperone	[more]
AT1G66240.1	5.6e-04	36.17	homolog of anti-oxidant 1	[more]
AT5G27690.1	9.6e-04	26.53	Heavy metal transport/detoxification superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.100		coord: 15..79 e-value: 2.9E-9 score: 39.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..98
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 24..62 e-value: 4.0E-8 score: 33.6
IPR006121	Heavy metal-associated domain, HMA	CDD	cd00371	HMA	coord: 23..71 e-value: 3.57106E-4 score: 33.7333
IPR017969	Heavy-metal-associated, conserved site	PROSITE	PS01047	HMA_1	coord: 22..51
IPR036163	Heavy metal-associated domain superfamily	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 17..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G011430.1	CmaCh16G011430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding