CmaCh16G011240 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G011240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Myb transcription factor
Location	Cma_Chr16: 8638546 .. 8641875 (+)
RNA-Seq Expression	CmaCh16G011240
Synteny	CmaCh16G011240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAAAAAAAAAACATCCAAAAATCAAAATCTCAAAATCTGCTCTGTGAAGAACGAAATCTAACCCTAATTTCTGGTTTTGGATCGGATCATGCAACTCGGATCCTCTGATCTAGTTGAAATTGAGATCGATTTCTGAAAGCGGCGGCGGAACGATGACGCGGCGGTGCTCACATTGCAGCCACAATGGGCACAACTCTCGGACTTGTCCGAATCGCGGCGTGAAGCTCTTTGGAGTCCGATTGACTGATGGTTCTATCCGGAAGAGTGCTAGTATGGGGAATCTTAGCCACTATGCCGGATCCGGATCGGGTGCTCTGCAAGGCGGGTCGAACAATCCGGCTTCTCCGGGCGAGACTCCCGAGCATGGCGTTGCGGCCGACGGCTATGCGTCGGAGGATTTCGTTCCTGGCTCTTCTTCGAGTTGCCGTGAGAGGAAGAAAGGTTTGAGAGTTTACGCTTTAATTTGAATTAGTTATTCTGTTCTTGTTTGATTTTTTGAATCTTGGTGATAGCTGGACTTTGCATGCTTATCCTTTTGATTCATGGAATTTTTTGGTGATCGACTGTTTTGACTCGACTACTGTTGCTCTTTCCTCTGTGATCGGCATAAATCTTATGTAATTATACTTTGGATAAATGGAAGTATTCTTAGTAGAGAATTTAAAAAATGGATATGTTCTAAGAAAAGTATTGTTTCCTTGTTAGAGGATAAATTTGATTGATAATTGTTTGGTACCTAATTTGTTTTCCTTTTTATGCTTTTGGAAACATTAGCTATTGTGAAATTGCTAAACTCATGTGACACCCTGTTTTCGGAAATGATTTTCAAAAAACACCAATCCATTTATTTCATTTCTTGCAAACATATGTTCTGATCTTTTCTTTTTCCATCGAGTTTCATGTTCATAAACAGAGAGGGGGGTTGAAAATAGAATATCCTATTGATTGGCTTGTTAAACATTGCCTCTATCTATCTTAGCCTTCTACCTTTGTGTATAAGCATCCTCTCTATCTCATTAATTACGTGCTATCCTGAATTTTTTCCAAAATGGATTCTACCTGACATATTTCTAAAATAGGATTTTGTGACATTTCTATTCCATGTTAATGAACAAGGCCAGCTTATGTTCTTGCGATTACACCCTAATAGGAATCGAGGAATGTATTTGAATTCTGTACAATTAACCTTTGATCATTTTGTGAGAATCAATTGATCTTTTATTAGATTTATGTGTTTGGTAATGCGCACAGGCGTTCCATGGACTGAGGAGGAGCATAGAATGTTTTTAATGGGGTTACAGAAACTCGGAAAAGGAGACTGGCGTGGGATAGCACGTAATTATGTTGTATCTAGAACACCGACACAAGTGGCCAGCCATGCCCAAAAGTATTTCATAAGGCAGACCAATGTCTCAAGACGAAAGAGGCGCTCCAGTTTGTTTGATATTGTAGCTGGCGAAGTTTGTACTCTCCATCCATCCTTTCGTAAATGCATATACTTGTCTAAATTTTCTCCTTCATATAACAAGGATGCCATTACTCTACTAAAACTAAAAAATTCTAGTTGTACAGTTCATCTAGTCTCCAGTTATGGAAATGTCAATAATCTACCACTAACTTTATATATCAGCCCAAGCCCACTACTAGTAGATATTGTCTGCTTTGGACTTTCCCTTTTGGGCTTCCCCTCAAAGTTTTTAAGGCGCGTTTGCTAGGGAGTGGTTTCCACACCCTTATAAAGGGTGTTTCGTTCTTCTCTCCAACCGTTGTGGTATCTCACAATCCATCTCCCTTCGGGGCCTAGCGTCCTCGTTGGCACTCGTTCTTTTCTCCAATTAATGTGGGACCCCCACTAAATCCACCCCTTTTGGGGCCTAGCGTTCTTGCTGGCACATCGCCTCATGTCCACCTCCTTCGAGACTCAGCCTCCTTATTGACACATTGCCCGGTGTCTGGCTCTGATACCATTTGTACCGGCCCAAGATGACCGCTAGATATTGTCCTCTTTGGGCTTCCCCTCAAAGTTCTTAAAACGCGTTTGCTAGGGAAAGGTTTCCACACCCTTATAAAAAGTGTTTCGTTCTCCTCCTCAACCGATGTGAGATCTCACACTTTACCTCATGTCTTAAATGTATGTGATGATAGTATTACAGTATTCTGCAAATTACCTTGCCTTCTTTCATAGTGAAATCCTTGAATAAAGATGCTAATTGTTTGGTTTTATGCATGCATGTCAATTAAGTAATACGATTAACCTTGTTATTCTTACTTTTTCTCATAGAAATTACTGATTCCTTTCCCCTGCCCACATCTTCTTTGCAGCATGTTGAGAATTCAATTGTGCAACAAGACTTCCTATCTGTTAACAATTCACATGCTGAATCACAAAGCAATAACCCATTGCCTACACCTCCCACTGTGGACGAAGAATGCGAGTCGATGGATTCCACCAACTCAAATGATGGAGAACCAGCACCTGCAGAACCAGAGGATCCCCAATGCTGTTATCCAGTTGTATATCCTGCATATGTTACACCCTTCTTTCCATTTTCCATTCCGTTCTACTCGGGATACAGTGCAGAATCCAATAATAAGGAGACACATGAGGTTCTTAAGCCAACAGCTGTGCATTTGAAGAGTCCTCTTAATGTTGATGAGCTGGTTGGCATGTCAAAACTCAGTCTGGGAGAATCAATTGGTCATGCAGGCCCCTCATCTCTTTCACTGAAACTACTCCAAGGGTCGTCTAGACGGTCTGCTTTCCATGCAAATCCAGCTTCTGGCAGTGAAAACATGAGTTCTGGTGGCAGTCCAATCCCTGCTGTTTAATGGAGCGCATACTTCTGAACTTCAGATTGTAGGTTATAATTACAGGGTATTGTCAATATACAACAAAATAATGTGCAGTCTGGTTTGGATTTATTAATATTTTCATGTTAGGTCAGTCTTTTTCCCCTGTCCCGTCCTGCTCGGTTTCTCCTGTGTTAACTAACTCGGTTGTAACTTGTAGGCTCTAGCATCTTCTGTTAGAAATCGTTCATTCCAACTTAAAGATTGTATGTTGTTTATCTTCAGTTTCTGGACTTGATGCTTATTTATATAGTTTCTGATATTCTAATTCATGCAGGAAGACGTTTCGATTATGCATTGCAATATTTATCGGGAGAGGTGTTCGAAACGTATTCCATCTCCTTGAACTTATCTGTGAGCTTTCTTCATAATTCTAAAATGAGTTTCTGGGCTGAAAATTTGACGAAGTGCAGGTATGTTTCATGTGTAATCAATCCTGTTTGTTAGGAGATTGCATCACTTCAT

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAAAAACATCCAAAAATCAAAATCTCAAAATCTGCTCTGTGAAGAACGAAATCTAACCCTAATTTCTGGTTTTGGATCGGATCATGCAACTCGGATCCTCTGATCTAGTTGAAATTGAGATCGATTTCTGAAAGCGGCGGCGGAACGATGACGCGGCGGTGCTCACATTGCAGCCACAATGGGCACAACTCTCGGACTTGTCCGAATCGCGGCGTGAAGCTCTTTGGAGTCCGATTGACTGATGGTTCTATCCGGAAGAGTGCTAGTATGGGGAATCTTAGCCACTATGCCGGATCCGGATCGGGTGCTCTGCAAGGCGGGTCGAACAATCCGGCTTCTCCGGGCGAGACTCCCGAGCATGGCGTTGCGGCCGACGGCTATGCGTCGGAGGATTTCGTTCCTGGCTCTTCTTCGAGTTGCCGTGAGAGGAAGAAAGGCGTTCCATGGACTGAGGAGGAGCATAGAATGTTTTTAATGGGGTTACAGAAACTCGGAAAAGGAGACTGGCGTGGGATAGCACGTAATTATGTTGTATCTAGAACACCGACACAAGTGGCCAGCCATGCCCAAAAGTATTTCATAAGGCAGACCAATGTCTCAAGACGAAAGAGGCGCTCCAGTTTGTTTGATATTGTAGCTGGCGAACATGTTGAGAATTCAATTGTGCAACAAGACTTCCTATCTGTTAACAATTCACATGCTGAATCACAAAGCAATAACCCATTGCCTACACCTCCCACTGTGGACGAAGAATGCGAGTCGATGGATTCCACCAACTCAAATGATGGAGAACCAGCACCTGCAGAACCAGAGGATCCCCAATGCTGTTATCCAGTTGTATATCCTGCATATGTTACACCCTTCTTTCCATTTTCCATTCCGTTCTACTCGGGATACAGTGCAGAATCCAATAATAAGGAGACACATGAGGTTCTTAAGCCAACAGCTGTGCATTTGAAGAGTCCTCTTAATGTTGATGAGCTGGTTGGCATGTCAAAACTCAGTCTGGGAGAATCAATTGGTCATGCAGGCCCCTCATCTCTTTCACTGAAACTACTCCAAGGGTCGTCTAGACGGTCTGCTTTCCATGCAAATCCAGCTTCTGGCAGTGAAAACATGAGTTCTGGTGGCAGTCCAATCCCTGCTGTTTAATGGAGCGCATACTTCTGAACTTCAGATTGTAGGTTATAATTACAGGGAAGACGTTTCGATTATGCATTGCAATATTTATCGGGAGAGGTGTTCGAAACGTATTCCATCTCCTTGAACTTATCTGTGAGCTTTCTTCATAATTCTAAAATGAGTTTCTGGGCTGAAAATTTGACGAAGTGCAGGTATGTTTCATGTGTAATCAATCCTGTTTGTTAGGAGATTGCATCACTTCAT

Coding sequence (CDS)

ATGACGCGGCGGTGCTCACATTGCAGCCACAATGGGCACAACTCTCGGACTTGTCCGAATCGCGGCGTGAAGCTCTTTGGAGTCCGATTGACTGATGGTTCTATCCGGAAGAGTGCTAGTATGGGGAATCTTAGCCACTATGCCGGATCCGGATCGGGTGCTCTGCAAGGCGGGTCGAACAATCCGGCTTCTCCGGGCGAGACTCCCGAGCATGGCGTTGCGGCCGACGGCTATGCGTCGGAGGATTTCGTTCCTGGCTCTTCTTCGAGTTGCCGTGAGAGGAAGAAAGGCGTTCCATGGACTGAGGAGGAGCATAGAATGTTTTTAATGGGGTTACAGAAACTCGGAAAAGGAGACTGGCGTGGGATAGCACGTAATTATGTTGTATCTAGAACACCGACACAAGTGGCCAGCCATGCCCAAAAGTATTTCATAAGGCAGACCAATGTCTCAAGACGAAAGAGGCGCTCCAGTTTGTTTGATATTGTAGCTGGCGAACATGTTGAGAATTCAATTGTGCAACAAGACTTCCTATCTGTTAACAATTCACATGCTGAATCACAAAGCAATAACCCATTGCCTACACCTCCCACTGTGGACGAAGAATGCGAGTCGATGGATTCCACCAACTCAAATGATGGAGAACCAGCACCTGCAGAACCAGAGGATCCCCAATGCTGTTATCCAGTTGTATATCCTGCATATGTTACACCCTTCTTTCCATTTTCCATTCCGTTCTACTCGGGATACAGTGCAGAATCCAATAATAAGGAGACACATGAGGTTCTTAAGCCAACAGCTGTGCATTTGAAGAGTCCTCTTAATGTTGATGAGCTGGTTGGCATGTCAAAACTCAGTCTGGGAGAATCAATTGGTCATGCAGGCCCCTCATCTCTTTCACTGAAACTACTCCAAGGGTCGTCTAGACGGTCTGCTTTCCATGCAAATCCAGCTTCTGGCAGTGAAAACATGAGTTCTGGTGGCAGTCCAATCCCTGCTGTTTAA

Protein sequence

MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYAGSGSGALQGGSNNPASPGETPEHGVAADGYASEDFVPGSSSSCRERKKGVPWTEEEHRMFLMGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQTNVSRRKRRSSLFDIVAGEHVENSIVQQDFLSVNNSHAESQSNNPLPTPPTVDEECESMDSTNSNDGEPAPAEPEDPQCCYPVVYPAYVTPFFPFSIPFYSGYSAESNNKETHEVLKPTAVHLKSPLNVDELVGMSKLSLGESIGHAGPSSLSLKLLQGSSRRSAFHANPASGSENMSSGGSPIPAV

Homology

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BLAST of CmaCh16G011240 vs. ExPASy Swiss-Prot
Match: Q9LVS0 (Transcription factor KUA1 OS=Arabidopsis thaliana OX=3702 GN=KUA1 PE=1 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 7.1e-104
Identity = 220/364 (60.44%), Postives = 259/364 (71.15%), Query Frame = 0


Query: 1   MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYAGSGSGALQGGSN 60
           MTRRCSHC+HNGHNSRTCPNRGVKLFGVRLT+GSIRKSASMGNLSHY GSGSG    GSN
Sbjct: 1   MTRRCSHCNHNGHNSRTCPNRGVKLFGVRLTEGSIRKSASMGNLSHYTGSGSGGHGTGSN 60

Query: 61  NPASPGETPEHGVAADGYASEDFVPGSSSSCRERKKGVPWTEEEHRMFLMGLQKLGKGDW 120
            P SPG+ P+H VA DGYASEDFV GSSSS RERKKG PWTEEEHRMFL+GLQKLGKGDW
Sbjct: 61  TPGSPGDVPDH-VAGDGYASEDFVAGSSSS-RERKKGTPWTEEEHRMFLLGLQKLGKGDW 120

Query: 121 RGIARNYVVSRTPTQVASHAQKYFIRQTNVSRRKRRSSLFDIVAGE-----------HVE 180
           RGI+RNYV +RTPTQVASHAQKYFIRQ+NVSRRKRRSSLFD+V  E             +
Sbjct: 121 RGISRNYVTTRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDMVPDEVGDIPMDLQEPEED 180

Query: 181 NSIVQQDFLSVNNSHAESQSNNPLPTPPTVD-EECESMDSTNSNDGEPAPA--------- 240
           N  V+ +    ++ H ++ + + L  P  ++ EECESMDSTNS  GEP            
Sbjct: 181 NIPVETEMQGADSIH-QTLAPSSLHAPSILEIEECESMDSTNSTTGEPTATAAAASSSSR 240

Query: 241 -------------EPEDPQCCYPVVYPAYVTPFFPFSIPFY-SGYSAESNNK-ETHEVLK 300
                        +P+ P   +P++YP Y +P++PF  P + +GY  E   K ETHE+L+
Sbjct: 241 LEETTQLQSQLQPQPQLPG-SFPILYPTYFSPYYPFPFPIWPAGYVPEPPKKEETHEILR 300

Query: 301 PTAVHLKSPLNVDELVGMSKLSLGESIGHA-GPSSLSLKLLQG-SSRRSAFHANPASGSE 327
           PTAVH K+P+NVDEL+GMSKLSL ES  H     SLSLKL  G SSR+SAFH NP+S S 
Sbjct: 301 PTAVHSKAPINVDELLGMSKLSLAESNKHGESDQSLSLKLGGGSSSRQSAFHPNPSSDSS 360

[Close]

BLAST of CmaCh16G011240 vs. ExPASy Swiss-Prot
Match: Q7XC57 (Transcription factor MYBS3 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS3 PE=2 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 2.4e-96
Identity = 199/328 (60.67%), Postives = 240/328 (73.17%), Query Frame = 0


Query: 1   MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYAGSGSGALQGGSN 60
           MTRRCSHCSHNGHNSRTCPNRGVK+FGVRLTDGSIRKSASMGNLS    S +G+  GG  
Sbjct: 1   MTRRCSHCSHNGHNSRTCPNRGVKIFGVRLTDGSIRKSASMGNLS-LLSSAAGSTSGG-- 60

Query: 61  NPASPGETPEHG-VAADGYASEDFVPGSSSSCRERKKGVPWTEEEHRMFLMGLQKLGKGD 120
             ASP + P+    AADGYAS+DFV GSSS+ R+RKKGVPWTEEEHR FL+GLQKLGKGD
Sbjct: 61  --ASPADGPDAAPTAADGYASDDFVQGSSSATRDRKKGVPWTEEEHRRFLLGLQKLGKGD 120

Query: 121 WRGIARNYVVSRTPTQVASHAQKYFIRQTNVSRRKRRSSLFDIVAGEHVENSIVQQDFLS 180
           WRGI+RN+VVSRTPTQVASHAQKYFIRQ+N++RRKRRSSLFD+V  E ++   +      
Sbjct: 121 WRGISRNFVVSRTPTQVASHAQKYFIRQSNMTRRKRRSSLFDMVPDESMDLPPLP----- 180

Query: 181 VNNSHAESQ-SNNPLPTPPTVDEECESMDSTNSNDGEPAPAE---PEDPQCCYPVVYPAY 240
                 E+Q  N P   PP  +EE +SM+S  S   E + A    P++ Q  YPV+ PAY
Sbjct: 181 -GGQEPETQVLNQPALPPPREEEEVDSMESDTSAVAESSSASAIMPDNLQSTYPVIVPAY 240

Query: 241 VTPFFPFSIPFYSGYSAESNN-KETHEVLKPTAVHLKSPLNVDELVGMSKLSLGESIGHA 300
            +PF  FS+PF+     E    +ETHE++KP  VH KSP+NVDELVGMSKLS+GES    
Sbjct: 241 FSPFLQFSVPFWQNQKDEDGPVQETHEIVKPVPVHSKSPINVDELVGMSKLSIGESNQET 300

Query: 301 GPSSLSLKLLQGSSRRSAFHANPASGSE 323
             +SLSL L+ G +R+SAFHANP + ++
Sbjct: 301 VSTSLSLNLVGGQNRQSAFHANPPTRAQ 317

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BLAST of CmaCh16G011240 vs. ExPASy Swiss-Prot
Match: Q2V9B0 (Transcription factor MYB1R1 OS=Solanum tuberosum OX=4113 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.1e-35
Identity = 117/296 (39.53%), Postives = 160/296 (54.05%), Query Frame = 0


Query: 23  VKLFGVRLTDGSIRKSASMGNLSHYA-GSGSGALQGGSNNPASPGETPEHGVAAD-GYAS 82
           + LFGVR+    +RKS S+ +LS Y   + +    GG NN +S        VA D GYAS
Sbjct: 24  IMLFGVRVKVDPMRKSVSLNDLSQYEHPNANNNNNGGDNNESSK-------VAQDEGYAS 83

Query: 83  -EDFVPGSSSSCRERKKGVPWTEEEHRMFLMGLQKLGKGDWRGIARNYVVSRTPTQVASH 142
            +D V   S+S RERK+GVPWTEEEH++FL+GLQK+GKGDWRGI+RN+V +RTPTQVASH
Sbjct: 84  ADDAVQHQSNSGRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASH 143

Query: 143 AQKYFIRQTNVSRRKRRSSLFDIVAG-------EHVENSIVQQDFLSVNNSHAESQSNNP 202
           AQKYF+R++N++RR+RRSSLFDI          E VEN   +Q+   V  +   +   N 
Sbjct: 144 AQKYFLRRSNLNRRRRRSSLFDITTDSVSVMPIEEVEN---KQEIPVVAPATLPTTKTNA 203

Query: 203 LPTPPTVDEECESMDSTNSNDGEPAPAEPEDPQCCYPVVY-------PAYVTPFFPFSIP 262
            P  PTV      +    S +              YP +           V P   FS+P
Sbjct: 204 FPVAPTVGPIIFPVQIDKSRE--------------YPTLLRHDHGNSSMLVGPVPMFSMP 263

Query: 263 FYSGYSAESNNKETHEVLKPTAVHLKSPLNVDELVG----------MSKLSLGESI 292
             S  +A   N   +  ++P+++ L+  L++D+             MS  S GESI
Sbjct: 264 NPS--TAIDLNANHNSTIEPSSLSLRLSLSLDQGQASSTRHSAYNVMSSFSNGESI 293

[Close]

BLAST of CmaCh16G011240 vs. ExPASy Swiss-Prot
Match: Q9FKF9 (Probable transcription factor At5g61620 OS=Arabidopsis thaliana OX=3702 GN=At5g61620 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 7.0e-35
Identity = 89/189 (47.09%), Postives = 112/189 (59.26%), Query Frame = 0


Query: 1   MTRRCSHCSHNGHNSRTCPN----RGVKLFGVRLTDG--------SIRKSASMGNLSHYA 60
           + + CSHC HNGHN+RTC N      VKLFGV ++          ++RKS S+GNL    
Sbjct: 8   VAKTCSHCGHNGHNARTCLNGVNKASVKLFGVNISSDPIRPPEVTALRKSLSLGNLDALL 67

Query: 61  GSGSGALQGGSNNPASPGETPEHGVAADGYASEDFVPG-SSSSCRERKKGVPWTEEEHRM 120
            +       GS +P +        V   GY S+  +      +  E+KKG PWTEEEHR 
Sbjct: 68  ANDE---SNGSGDPIA-------AVDDTGYHSDGQIHSKKGKTAHEKKKGKPWTEEEHRN 127

Query: 121 FLMGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQTNVSRRKRRSSLFDIVAGEH 177
           FL+GL KLGKGDWRGIA+++V +RTPTQVASHAQKYFIR     +RKRR+SLFDI   + 
Sbjct: 128 FLIGLNKLGKGDWRGIAKSFVSTRTPTQVASHAQKYFIRLNVNDKRKRRASLFDISLEDQ 186

[Close]

BLAST of CmaCh16G011240 vs. ExPASy Swiss-Prot
Match: Q9FNN6 (Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.7e-26
Identity = 75/187 (40.11%), Postives = 107/187 (57.22%), Query Frame = 0


Query: 53  GALQGGSNNPASPGETPEHGVAADGYASEDFVPGSSSSCRERKKGVPWTEEEHRMFLMGL 112
           G+ +G + +    G + + G   + +A E    G S S +ER+KG+ WTE+EHR+FL+GL
Sbjct: 75  GSPEGSNGHAGDEGASSKKG--GNSHAGESNQAGKSKSDQERRKGIAWTEDEHRLFLLGL 134

Query: 113 QKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQTNVSRRKRRSSLFDIVAGEHVENSI 172
            K GKGDWR I+RN+VV+RTPTQVASHAQKYFIR  ++++ +RRSS+ DI +  + + S 
Sbjct: 135 DKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVGNADVST 194

Query: 173 VQQDFLSVNNSHAESQSNNPLPTPPTVDEECESMDSTNSNDGEPAPAEPEDPQCCYPVV- 232
            Q      NNS+  + +NN   +P       +S     S       A P  P    P + 
Sbjct: 195 PQGPITGQNNSNNNNNNNNNNSSPAVAGGGNKSAKQAVSQ------APPGPPMYGTPAIG 253

Query: 233 YPAYVTP 239
            PA  TP
Sbjct: 255 QPAVGTP 253

[Close]

BLAST of CmaCh16G011240 vs. TAIR 10
Match: AT5G47390.1 (myb-like transcription factor family protein )

HSP 1 Score: 378.6 bits (971), Expect = 5.1e-105
Identity = 220/364 (60.44%), Postives = 259/364 (71.15%), Query Frame = 0


Query: 1   MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYAGSGSGALQGGSN 60
           MTRRCSHC+HNGHNSRTCPNRGVKLFGVRLT+GSIRKSASMGNLSHY GSGSG    GSN
Sbjct: 1   MTRRCSHCNHNGHNSRTCPNRGVKLFGVRLTEGSIRKSASMGNLSHYTGSGSGGHGTGSN 60

Query: 61  NPASPGETPEHGVAADGYASEDFVPGSSSSCRERKKGVPWTEEEHRMFLMGLQKLGKGDW 120
            P SPG+ P+H VA DGYASEDFV GSSSS RERKKG PWTEEEHRMFL+GLQKLGKGDW
Sbjct: 61  TPGSPGDVPDH-VAGDGYASEDFVAGSSSS-RERKKGTPWTEEEHRMFLLGLQKLGKGDW 120

Query: 121 RGIARNYVVSRTPTQVASHAQKYFIRQTNVSRRKRRSSLFDIVAGE-----------HVE 180
           RGI+RNYV +RTPTQVASHAQKYFIRQ+NVSRRKRRSSLFD+V  E             +
Sbjct: 121 RGISRNYVTTRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDMVPDEVGDIPMDLQEPEED 180

Query: 181 NSIVQQDFLSVNNSHAESQSNNPLPTPPTVD-EECESMDSTNSNDGEPAPA--------- 240
           N  V+ +    ++ H ++ + + L  P  ++ EECESMDSTNS  GEP            
Sbjct: 181 NIPVETEMQGADSIH-QTLAPSSLHAPSILEIEECESMDSTNSTTGEPTATAAAASSSSR 240

Query: 241 -------------EPEDPQCCYPVVYPAYVTPFFPFSIPFY-SGYSAESNNK-ETHEVLK 300
                        +P+ P   +P++YP Y +P++PF  P + +GY  E   K ETHE+L+
Sbjct: 241 LEETTQLQSQLQPQPQLPG-SFPILYPTYFSPYYPFPFPIWPAGYVPEPPKKEETHEILR 300

Query: 301 PTAVHLKSPLNVDELVGMSKLSLGESIGHA-GPSSLSLKLLQG-SSRRSAFHANPASGSE 327
           PTAVH K+P+NVDEL+GMSKLSL ES  H     SLSLKL  G SSR+SAFH NP+S S 
Sbjct: 301 PTAVHSKAPINVDELLGMSKLSLAESNKHGESDQSLSLKLGGGSSSRQSAFHPNPSSDSS 360

[Close]

BLAST of CmaCh16G011240 vs. TAIR 10
Match: AT3G16350.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 243.0 bits (619), Expect = 3.3e-64
Identity = 178/396 (44.95%), Postives = 223/396 (56.31%), Query Frame = 0


Query: 1   MTRRCSHCSHNGHNSRTCPNRG------------------------VKLFGVRLTDGS-I 60
           MTRRCSHCS+NGHNSRTCP RG                        VKLFGVRLTDGS I
Sbjct: 1   MTRRCSHCSNNGHNSRTCPTRGGGTCGGSGGGGGGGGGGGSGSSSAVKLFGVRLTDGSII 60

Query: 61  RKSASMGNLSHYAGSGSGALQGGSNNPASPGET--------PEHGVAA-----DGYASED 120
           +KSASMGNLS  A + + A      +P+SP  T         +H   +     +GY S+D
Sbjct: 61  KKSASMGNLSALAVAAAAATH-HRLSPSSPLATSNLNDSPLSDHARYSNLHHNEGYLSDD 120

Query: 121 FVPGSSSSCR--ERKKGVPWTEEEHRMFLMGLQKLGKGDWRGIARNYVVSRTPTQVASHA 180
              GS SS R  ERK+GVPWTEEEHR+FL+GLQKLGKGDWRGI+RNYV SRTPTQVASHA
Sbjct: 121 PAHGSGSSHRRGERKRGVPWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHA 180

Query: 181 QKYFIRQTNVSRRKRRSSLFDIVAGEHVENSIVQQDFLSVNNS--HAESQSNNPLP---- 240
           QKYFIR T+ SRRKRRSSLFD+V  E V +S   Q+  ++N S    E +  + LP    
Sbjct: 181 QKYFIRHTSSSRRKRRSSLFDMVTDEMVTDSSPTQEEQTLNGSSPSKEPEKKSYLPSLEL 240

Query: 241 -------------TPPTVDEECESMDSTNSNDGEPAPAEPEDPQCCYPVVYPAYVTPFFP 300
                        T P  ++  E+++ +N       P     P  C+PV Y    T + P
Sbjct: 241 SLNNTTEAEEVVATAPRQEKSQEAIEPSNGVSPMLVPGGFFPP--CFPVTY----TIWLP 300

Query: 301 FSIPFYSGYSAESNNKETHEVLKPTAVHLKSPLNVDELVGMSKLSLGESIGH---AGPSS 335
            S+           + + H+VLKP     K  +N+DELVGMS+LS+G +  H     PS 
Sbjct: 301 ASLHGTEHALNAETSSQQHQVLKPKPGFAKERVNMDELVGMSQLSIGMATRHETETSPSP 360

[Close]

BLAST of CmaCh16G011240 vs. TAIR 10
Match: AT1G70000.1 (myb-like transcription factor family protein )

HSP 1 Score: 166.4 bits (420), Expect = 3.9e-41
Identity = 105/238 (44.12%), Postives = 132/238 (55.46%), Query Frame = 0


Query: 1   MTRRCSHCSHNGHNSRTCP---------------NRGVKLFGVRLTDGS---IRKSASMG 60
           M+R CS C +NGHNSRTCP                + + LFGVR+T+ S    RKS SM 
Sbjct: 1   MSRSCSQCGNNGHNSRTCPTDITTTGDNNDKGGGEKAIMLFGVRVTEASSSCFRKSVSMN 60

Query: 61  NLSHYAGSGSGALQGGSNNPASPGETPEHGVAADGYASEDFVPGSSSSCRERKKGVPWTE 120
           NLS +        Q    NP   G          GYAS+D V  S  + RERK+G PWTE
Sbjct: 61  NLSQFD-------QTPDPNPTDDG----------GYASDDVVHASGRN-RERKRGTPWTE 120

Query: 121 EEHRMFLMGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQTNVSRRKRRSSLFDI 180
           EEHR+FL GL K+GKGDWRGI+RN+V +RTPTQVASHAQKYF+R+TN +RR+RRSSLFDI
Sbjct: 121 EEHRLFLTGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRTNQNRRRRRSSLFDI 180

Query: 181 VAGEHVENSIVQQDFLSVNNSHAESQSNNPLPTPPTVDEECESMDSTNSNDGEPAPAE 221
                + +S  +      N      +   P+P P  +    +  D   +    PA  E
Sbjct: 181 TPDSFIGSSKEE------NQLQTPLELIRPVPIPIPIPPSRKMADLNLNKKKTPATTE 214

[Close]

BLAST of CmaCh16G011240 vs. TAIR 10
Match: AT1G70000.2 (myb-like transcription factor family protein )

HSP 1 Score: 166.4 bits (420), Expect = 3.9e-41
Identity = 105/238 (44.12%), Postives = 132/238 (55.46%), Query Frame = 0


Query: 1   MTRRCSHCSHNGHNSRTCP---------------NRGVKLFGVRLTDGS---IRKSASMG 60
           M+R CS C +NGHNSRTCP                + + LFGVR+T+ S    RKS SM 
Sbjct: 1   MSRSCSQCGNNGHNSRTCPTDITTTGDNNDKGGGEKAIMLFGVRVTEASSSCFRKSVSMN 60

Query: 61  NLSHYAGSGSGALQGGSNNPASPGETPEHGVAADGYASEDFVPGSSSSCRERKKGVPWTE 120
           NLS +        Q    NP   G          GYAS+D V  S  + RERK+G PWTE
Sbjct: 61  NLSQFD-------QTPDPNPTDDG----------GYASDDVVHASGRN-RERKRGTPWTE 120

Query: 121 EEHRMFLMGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQTNVSRRKRRSSLFDI 180
           EEHR+FL GL K+GKGDWRGI+RN+V +RTPTQVASHAQKYF+R+TN +RR+RRSSLFDI
Sbjct: 121 EEHRLFLTGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRTNQNRRRRRSSLFDI 180

Query: 181 VAGEHVENSIVQQDFLSVNNSHAESQSNNPLPTPPTVDEECESMDSTNSNDGEPAPAE 221
                + +S  +      N      +   P+P P  +    +  D   +    PA  E
Sbjct: 181 TPDSFIGSSKEE------NQLQTPLELIRPVPIPIPIPPSRKMADLNLNKKKTPATTE 214

[Close]

BLAST of CmaCh16G011240 vs. TAIR 10
Match: AT1G19000.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 150.6 bits (379), Expect = 2.2e-36
Identity = 92/194 (47.42%), Postives = 117/194 (60.31%), Query Frame = 0


Query: 6   SHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYAGSG-----SGALQGGSN 65
           S  S  G    T     + LFGVR+    +RK  S+ NLS Y  S         +  G+ 
Sbjct: 5   SSSSETGDCGVTGKRDEIMLFGVRVVVDPMRKCVSLNNLSDYEKSSPEDEIPKIVTAGAG 64

Query: 66  NPASPGETPEHGVAADGYASEDFVPGSSSSCRERKKGVPWTEEEHRMFLMGLQKLGKGDW 125
           +     ET    + ADGYAS +     SSS   RK+GVPWTE EH+ FL+GLQK+GKGDW
Sbjct: 65  DGEDKNETDATVIVADGYASANDAVQISSSSGGRKRGVPWTENEHKRFLIGLQKVGKGDW 124

Query: 126 RGIARNYVVSRTPTQVASHAQKYFIRQTNVSRRKRRSSLFDIVAGEHVENSIVQQDFLSV 185
           +GI+RN+V SRTPTQVASHAQKYF+R+TN++RR+RRSSLFDI   E V    ++QD    
Sbjct: 125 KGISRNFVKSRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITT-ETVTEMAMEQD---- 184

Query: 186 NNSHAESQSNNPLP 195
                 +Q N+PLP
Sbjct: 185 -----PTQENSPLP 188

The following BLAST results are available for this feature:

BLAST of CmaCh16G011240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVS0	7.1e-104	60.44	Transcription factor KUA1 OS=Arabidopsis thaliana OX=3702 GN=KUA1 PE=1 SV=1	[more]
Q7XC57	2.4e-96	60.67	Transcription factor MYBS3 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS3 PE=...	[more]
Q2V9B0	4.1e-35	39.53	Transcription factor MYB1R1 OS=Solanum tuberosum OX=4113 PE=2 SV=1	[more]
Q9FKF9	7.0e-35	47.09	Probable transcription factor At5g61620 OS=Arabidopsis thaliana OX=3702 GN=At5g6...	[more]
Q9FNN6	2.7e-26	40.11	Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1	[more]

BLAST of CmaCh16G011240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47390.1	5.1e-105	60.44	myb-like transcription factor family protein	[more]
AT3G16350.1	3.3e-64	44.95	Homeodomain-like superfamily protein	[more]
AT1G70000.1	3.9e-41	44.12	myb-like transcription factor family protein	[more]
AT1G70000.2	3.9e-41	44.12	myb-like transcription factor family protein	[more]
AT1G19000.1	2.2e-36	47.42	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 96..146 e-value: 4.1E-11 score: 52.9
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 92..144 score: 7.828165
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 99..144 e-value: 4.07575E-10 score: 52.5778
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 99..143 e-value: 5.8E-11 score: 42.4
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 92..148 score: 20.081087
None	No IPR available	GENE3D	1.10.10.60		coord: 98..150 e-value: 4.6E-14 score: 54.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 312..334
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..222
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 312..328
None	No IPR available	PANTHER	PTHR44191	TRANSCRIPTION FACTOR KUA1	coord: 1..322
None	No IPR available	PANTHER	PTHR44191:SF43	BNAC01G21010D PROTEIN	coord: 1..322
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 95..147 e-value: 1.3E-19 score: 68.2
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 100..148 score: 9.999895
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 94..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G011240.1	CmaCh16G011240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
biological_process	GO:0009723	response to ethylene
biological_process	GO:0009739	response to gibberellin
molecular_function	GO:0003677	DNA binding