CmaCh16G011220 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G011220
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	homeobox-leucine zipper protein HAT4-like
Location	Cma_Chr16: 8618431 .. 8620131 (-)
RNA-Seq Expression	CmaCh16G011220
Synteny	CmaCh16G011220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTTTAAGAAACAAATTCCCAATTCCCCAATTTCTTCTCTTTCTTTCTTTCTTTCTTTTCTATATAATCCTTTCTTCTCCCCTTCTACTTGGACCACACCTCACTCATCCTTCTTCTTCTTCTTCTCTCTCTTACCCTGTTTCTTCTCTCTCTACAAATTCAAGAAATTTGCAGAGCTATGATGGCCGGGAAGGACGATGGGCTTGGTTTGAGCCTTGGGTTGAGCTTAGAGTCCCAACCCCACCGCCATTTGCAGCTCAATCTCATGCCGTCTTGGACTAATGATGCCTCCTCTGGTTCGAATCTCTTGACCCGAACAGAGTAGAACAGAGTTGATGTTGTTTTCTTTGGGCTTTTTTTTAAATTTTGGAATTTGGGTTTTGCAGATCGGACTTCGGAAACTGGGCGATCGCTGCTCCGGGGTATTGATGTGAACCGGATTCCGCCGTCGATGGCGGATTGTGAGGAGGAGGCGGCGATGTCGAGTCCGAATAGTACGGTGTCGAGTGTGAGTGGGAAACGGAGTGAACGGGAAACGAACGGCGAGGATCTCGACGGCGATAGAGATTGTTTCAGAGGAATTAGCGATGAAGAAGACGGCGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTCTTGGAAGATAGCTTCAAAGAACACAACACTCTCAATCCTGTAAGTCTTGTCTCAAACCCGACCCGACCCGATTCGTTGATGAAATTTTCTCGGGAACCAAACAGAAAATTTATGAGGGTATTTTCGTAATTTTATACAGAAGCAAAAGTTGGCTCTGGCGAAACAGTTAGGTCTCCGGCCGAGACAAGTTGAAGTATGGTTCCAAAACAGAAGGGCAAGGTGAGGAAATTTCCTTCATTCACAAGGGCATTTTCGTCATAATAACAAATTAAATCCTTTTTCCCTTTGACCTCATAATTTCAAATTTTTATTTTATTTAATGAATATATTTTCAGGTATTTATTTATGAAAAATAATCCTTAAAATTTTAAAAATTAGAATGTAAATTACCAATTTAAGCATAAATCAGATCATAAATATACCTATTGGATCGATATATTTATATATAAATTAAAAAATTAGAAATTTAAATACTTTTTTTAATTGATTTAAACATAGATTTAATATATAAATAAATGAGAAATTAGTTGTTAATATATTTATAATTATTTATAAATACAGGACAAAATTGAAGCAAACGGAGGTTGATTGCGAGTTTCTAAAGAGATGCTGTGAGAATCTGACGGACGAGAATAGGCGGTTGCAAAAAGAAGTACAGGAACTGAGAGCACTGAAACTTTCCCCACAATTCTACATGCACATGACCCCACCCACCACCCTTACCATGTGCCCATCATGCGAGCGTGTCGCGGTCCCAACCTCCACGTCAGCCCCCACTACAGTGACACGAGTGGGCCAAGCCCAAGCCCAGCCCCACCACGCTCGGCCCATCCACCTCAACCCGTGGGCCTCCGCCATCCCGGCCCGGCCATTCAACGCCCTACACCCTCGCTCGTAAATACCCTCCCCACCGACGAGGGCAATTCCGAGTTTTCGCTATCTTAGGATACGGTTGTTGGGCCGGGATTTGGTGGGCCTCTGTGTTTTGTAATGTTCGGCCCATCTTGTCATAATTAGTGTTGAGTAGTTTATTTATTTATCTTAGGGCTA

mRNA sequence

TAATTTTAAGAAACAAATTCCCAATTCCCCAATTTCTTCTCTTTCTTTCTTTCTTTCTTTTCTATATAATCCTTTCTTCTCCCCTTCTACTTGGACCACACCTCACTCATCCTTCTTCTTCTTCTTCTCTCTCTTACCCTGTTTCTTCTCTCTCTACAAATTCAAGAAATTTGCAGAGCTATGATGGCCGGGAAGGACGATGGGCTTGGTTTGAGCCTTGGGTTGAGCTTAGAGTCCCAACCCCACCGCCATTTGCAGCTCAATCTCATGCCGTCTTGGACTAATGATGCCTCCTCTGATCGGACTTCGGAAACTGGGCGATCGCTGCTCCGGGGTATTGATGTGAACCGGATTCCGCCGTCGATGGCGGATTGTGAGGAGGAGGCGGCGATGTCGAGTCCGAATAGTACGGTGTCGAGTGTGAGTGGGAAACGGAGTGAACGGGAAACGAACGGCGAGGATCTCGACGGCGATAGAGATTGTTTCAGAGGAATTAGCGATGAAGAAGACGGCGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTCTTGGAAGATAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAGTTGGCTCTGGCGAAACAGTTAGGTCTCCGGCCGAGACAAGTTGAAGTATGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACGGAGGTTGATTGCGAGTTTCTAAAGAGATGCTGTGAGAATCTGACGGACGAGAATAGGCGGTTGCAAAAAGAAGTACAGGAACTGAGAGCACTGAAACTTTCCCCACAATTCTACATGCACATGACCCCACCCACCACCCTTACCATGTGCCCATCATGCGAGCGTGTCGCGGTCCCAACCTCCACGTCAGCCCCCACTACAGTGACACGAGTGGGCCAAGCCCAAGCCCAGCCCCACCACGCTCGGCCCATCCACCTCAACCCGTGGGCCTCCGCCATCCCGGCCCGGCCATTCAACGCCCTACACCCTCGCTCGTAAATACCCTCCCCACCGACGAGGGCAATTCCGAGTTTTCGCTATCTTAGGATACGGTTGTTGGGCCGGGATTTGGTGGGCCTCTGTGTTTTGTAATGTTCGGCCCATCTTGTCATAATTAGTGTTGAGTAGTTTATTTATTTATCTTAGGGCTA

Coding sequence (CDS)

ATGATGGCCGGGAAGGACGATGGGCTTGGTTTGAGCCTTGGGTTGAGCTTAGAGTCCCAACCCCACCGCCATTTGCAGCTCAATCTCATGCCGTCTTGGACTAATGATGCCTCCTCTGATCGGACTTCGGAAACTGGGCGATCGCTGCTCCGGGGTATTGATGTGAACCGGATTCCGCCGTCGATGGCGGATTGTGAGGAGGAGGCGGCGATGTCGAGTCCGAATAGTACGGTGTCGAGTGTGAGTGGGAAACGGAGTGAACGGGAAACGAACGGCGAGGATCTCGACGGCGATAGAGATTGTTTCAGAGGAATTAGCGATGAAGAAGACGGCGAAACTTCTAGAAAAAAGCTTCGGCTTACTAAAGATCAGTCCGCCGTCTTGGAAGATAGCTTCAAAGAACACAACACTCTCAATCCTAAGCAAAAGTTGGCTCTGGCGAAACAGTTAGGTCTCCGGCCGAGACAAGTTGAAGTATGGTTCCAAAACAGAAGGGCAAGGACAAAATTGAAGCAAACGGAGGTTGATTGCGAGTTTCTAAAGAGATGCTGTGAGAATCTGACGGACGAGAATAGGCGGTTGCAAAAAGAAGTACAGGAACTGAGAGCACTGAAACTTTCCCCACAATTCTACATGCACATGACCCCACCCACCACCCTTACCATGTGCCCATCATGCGAGCGTGTCGCGGTCCCAACCTCCACGTCAGCCCCCACTACAGTGACACGAGTGGGCCAAGCCCAAGCCCAGCCCCACCACGCTCGGCCCATCCACCTCAACCCGTGGGCCTCCGCCATCCCGGCCCGGCCATTCAACGCCCTACACCCTCGCTCGTAA

Protein sequence

MMAGKDDGLGLSLGLSLESQPHRHLQLNLMPSWTNDASSDRTSETGRSLLRGIDVNRIPPSMADCEEEAAMSSPNSTVSSVSGKRSERETNGEDLDGDRDCFRGISDEEDGETSRKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPTSTSAPTTVTRVGQAQAQPHHARPIHLNPWASAIPARPFNALHPRS

Homology

[Close]

BLAST of CmaCh16G011220 vs. ExPASy Swiss-Prot
Match: Q05466 (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana OX=3702 GN=HAT4 PE=1 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.1e-76
Identity = 179/304 (58.88%), Postives = 207/304 (68.09%), Query Frame = 0


Query: 1   MMAGKDDGLGLSLGLSLESQPHRHLQLNLMP-----------------SWTND-----AS 60
           MM  KDD LGLSLGL+    P + + L   P                 SW         +
Sbjct: 1   MMFEKDD-LGLSLGLNF---PKKQINLKSNPSVSVTPSSSSFGLFRRSSWNESFTSSVPN 60

Query: 61  SDRTSETGRSLLRGIDVNRIPPSMADC-EEEAAMSSPNSTVSSVSGKRSERETNGEDLDG 120
           SD + +  R+ +RGIDVNR PPS A+  +E+A +SSPNSTVSS +GKRSERE      D 
Sbjct: 61  SDSSQKETRTFIRGIDVNR-PPSTAEYGDEDAGVSSPNSTVSSSTGKRSEREE-----DT 120

Query: 121 DRDCFRGISDEEDGETSRKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQV 180
           D    RGISD+EDG+ SRKKLRL+KDQSA+LE++FK+H+TLNPKQK ALAKQLGLR RQV
Sbjct: 121 DPQGSRGISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQV 180

Query: 181 EVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMHMTPP 240
           EVWFQNRRARTKLKQTEVDCEFL+RCCENLT+ENRRLQKEV ELRALKLSPQFYMHM+PP
Sbjct: 181 EVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQFYMHMSPP 240

Query: 241 TTLTMCPSCERVAVPTSTSAPTTVTRVGQAQAQPHHARPIHLNPWASAI---PARPFNAL 279
           TTLTMCPSCE V+VP             QA    HH R + +N WA A        F+AL
Sbjct: 241 TTLTMCPSCEHVSVPPPQP---------QAATSAHH-RSLPVNAWAPATRISHGLTFDAL 284

[Close]

BLAST of CmaCh16G011220 vs. ExPASy Swiss-Prot
Match: P46601 (Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana OX=3702 GN=HAT2 PE=1 SV=2)

HSP 1 Score: 272.7 bits (696), Expect = 4.6e-72
Identity = 176/299 (58.86%), Postives = 203/299 (67.89%), Query Frame = 0


Query: 1   MMAGKDDGLGLSLGLSLESQPHRHLQLNLMP--SWTNDASSDRTSET--GRSLLRGIDVN 60
           MM GK+D LGLSL L   SQ H  LQ+NL P  S +N+      ++T    S LR IDVN
Sbjct: 1   MMMGKED-LGLSLSLGF-SQNHNPLQMNLNPNSSLSNNLQRLPWNQTFDPTSDLRKIDVN 60

Query: 61  RIPPSMADCEEEAAMSSPNSTVSS-VSGKRSERE-------TNGEDLD---GDRDCFRGI 120
              PS  +CEE+  +SSPNST+SS +SGKRSERE        +G+D D    DR   RG 
Sbjct: 61  SF-PSTVNCEEDTGVSSPNSTISSTISGKRSEREGISGTGVGSGDDHDEITPDRGYSRGT 120

Query: 121 SDEED--GETSRKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQN 180
           SDEE+  GETSRKKLRL+KDQSA LE++FKEHNTLNPKQKLALAK+L L  RQVEVWFQN
Sbjct: 121 SDEEEDGGETSRKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQN 180

Query: 181 RRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMC 240
           RRARTKLKQTEVDCE+LKRC E LT+ENRRLQKE  ELR LKLSPQFY  MTPPTTL MC
Sbjct: 181 RRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSPQFYGQMTPPTTLIMC 240

Query: 241 PSCERVAVPTSTSAPTTVTRVGQAQAQPHHARPIHLNPWAS----AIPARPFNALHPRS 279
           PSCERV  P+S++               H+ RP+ +NPW +          F AL PRS
Sbjct: 241 PSCERVGGPSSSN-------------HHHNHRPVSINPWVACAGQVAHGLNFEALRPRS 283

[Close]

BLAST of CmaCh16G011220 vs. ExPASy Swiss-Prot
Match: P46600 (Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana OX=3702 GN=HAT1 PE=1 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 7.3e-70
Identity = 171/303 (56.44%), Postives = 203/303 (67.00%), Query Frame = 0


Query: 1   MMAGKDD-GLGLSLGLSLESQPHRHLQLNLMPS-----------WTNDASSDRTSETGRS 60
           MM GK+D GL LSLG + ++ P   LQLNL P+           W N      + +  + 
Sbjct: 1   MMMGKEDLGLSLSLGFA-QNHP---LQLNLKPTSSPMSNLQMFPW-NQTLVSSSDQQKQQ 60

Query: 61  LLRGIDVNRIPPSMADCEEEAAMSSPNSTVSS-VSGKR--SERETN-----GEDLD--GD 120
            LR IDVN +P ++ D EEE  +SSPNST+SS VSGKR  +ERE       G+DLD   D
Sbjct: 61  FLRKIDVNSLPTTV-DLEEETGVSSPNSTISSTVSGKRRSTEREGTSGGGCGDDLDITLD 120

Query: 121 RDCFRGISDEED---GETSRKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPR 180
           R   RG SDEE+   GET RKKLRL+KDQSAVLED+FKEHNTLNPKQKLALAK+LGL  R
Sbjct: 121 RSSSRGTSDEEEDYGGETCRKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTAR 180

Query: 181 QVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMHMT 240
           QVEVWFQNRRARTKLKQTEVDCE+LKRC E LT+ENRRL+KE  ELRALKLSP+ Y  M+
Sbjct: 181 QVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELRALKLSPRLYGQMS 240

Query: 241 PPTTLTMCPSCERVAVPTSTSAPTTVTRVGQAQAQPHHARPIHLNPWASAIPARPFNALH 279
           PPTTL MCPSCERVA P+S++               H+ R + L+PW        F+ + 
Sbjct: 241 PPTTLLMCPSCERVAGPSSSN---------------HNQRSVSLSPWLQMAHGSTFDVMR 282

[Close]

BLAST of CmaCh16G011220 vs. ExPASy Swiss-Prot
Match: P92953 (Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana OX=3702 GN=ATHB-4 PE=1 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 6.2e-69
Identity = 171/320 (53.44%), Postives = 201/320 (62.81%), Query Frame = 0


Query: 2   MAGKDDGLGLSLGLSLESQPHRHLQLNLMPSWTNDASS---------------------- 61
           M  +DDGLGLSL L    Q    L+LNLMP  T+ +SS                      
Sbjct: 1   MGERDDGLGLSLSLGNSQQKEPSLRLNLMPLTTSSSSSSFQHMHNQNNNSHPQKIHNISW 60

Query: 62  --------------DRTSETGRSLLRGIDVNRIPPSMA--DCEEEAA-MSSPNSTVSSVS 121
                         +R S+ G S LRG +VNR   S+A  D EEEAA +SSPNS VSS+S
Sbjct: 61  THLFQSSGIKRTTAERNSDAG-SFLRGFNVNRAQSSVAVVDLEEEAAVVSSPNSAVSSLS 120

Query: 122 GKRSERET--NGEDLDGDR-DCFR----GISDEED---GETSRKKLRLTKDQSAVLEDSF 181
           G + +      G++ + +R  C R    G SD+ED   G+ SRKKLRL+KDQ+ VLE++F
Sbjct: 121 GNKRDLAVARGGDENEAERASCSRGGGSGGSDDEDGGNGDGSRKKLRLSKDQALVLEETF 180

Query: 182 KEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENR 241
           KEH+TLNPKQKLALAKQL LR RQVEVWFQNRRARTKLKQTEVDCE+LKRCC+NLT+ENR
Sbjct: 181 KEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENR 240

Query: 242 RLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERV--------AVPTSTSAPTTVTRV 265
           RLQKEV ELRALKLSP  YMHMTPPTTLTMCPSCERV        A P++T+ PT V R 
Sbjct: 241 RLQKEVSELRALKLSPHLYMHMTPPTTLTMCPSCERVSSSAATVTAAPSTTTTPTVVGR- 300

[Close]

BLAST of CmaCh16G011220 vs. ExPASy Swiss-Prot
Match: P46602 (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana OX=3702 GN=HAT3 PE=1 SV=2)

HSP 1 Score: 262.3 bits (669), Expect = 6.2e-69
Identity = 174/315 (55.24%), Postives = 205/315 (65.08%), Query Frame = 0


Query: 2   MAGKDDGLGLSLGLSLE-SQPHRHLQLNLMP--------------------------SWT 61
           M+ +DDGLGLSL LSL  +Q     +LN MP                          +W 
Sbjct: 1   MSERDDGLGLSLSLSLGFNQKDPSSRLNPMPLASYASSSHMQHMQQSNYNHPQKIQNTWI 60

Query: 62  NDASSDRTSETGRSLLRGIDVNRIPPS-MADCEEE-AAMSSPNSTVSSV-SGKRSERETN 121
           N   S   +   RS LRGIDVNR P + + D E+E A +SSPNSTVSSV SGK+SERE  
Sbjct: 61  NMFQSSERNSDMRSFLRGIDVNRAPSTVVVDVEDEGAGVSSPNSTVSSVMSGKKSERELM 120

Query: 122 G----------EDLDGDR-DC-FRGISDEEDG-----ETSRKKLRLTKDQSAVLEDSFKE 181
                      ED + +R  C   G SD+EDG     ++SRKKLRL+K+Q+ VLE++FKE
Sbjct: 121 AAAGAVGGGRVEDNEIERASCSLGGGSDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKE 180

Query: 182 HNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRL 241
           H+TLNPKQK+ALAKQL LR RQVEVWFQNRRARTKLKQTEVDCE+LKRCCENLTDENRRL
Sbjct: 181 HSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRL 240

Query: 242 QKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPTSTSAPTTVTRVGQAQAQPHHA 270
           QKEV ELRALKLSP  YMHM PPTTLTMCPSCERVAV +S+S+         +   P   
Sbjct: 241 QKEVSELRALKLSPHLYMHMKPPTTLTMCPSCERVAVTSSSSSVAPPVMNSSSPMGP--- 300

[Close]

BLAST of CmaCh16G011220 vs. TAIR 10
Match: AT4G16780.1 (homeobox protein 2 )

HSP 1 Score: 288.1 bits (736), Expect = 7.5e-78
Identity = 179/304 (58.88%), Postives = 207/304 (68.09%), Query Frame = 0


Query: 1   MMAGKDDGLGLSLGLSLESQPHRHLQLNLMP-----------------SWTND-----AS 60
           MM  KDD LGLSLGL+    P + + L   P                 SW         +
Sbjct: 1   MMFEKDD-LGLSLGLNF---PKKQINLKSNPSVSVTPSSSSFGLFRRSSWNESFTSSVPN 60

Query: 61  SDRTSETGRSLLRGIDVNRIPPSMADC-EEEAAMSSPNSTVSSVSGKRSERETNGEDLDG 120
           SD + +  R+ +RGIDVNR PPS A+  +E+A +SSPNSTVSS +GKRSERE      D 
Sbjct: 61  SDSSQKETRTFIRGIDVNR-PPSTAEYGDEDAGVSSPNSTVSSSTGKRSEREE-----DT 120

Query: 121 DRDCFRGISDEEDGETSRKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQV 180
           D    RGISD+EDG+ SRKKLRL+KDQSA+LE++FK+H+TLNPKQK ALAKQLGLR RQV
Sbjct: 121 DPQGSRGISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQV 180

Query: 181 EVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMHMTPP 240
           EVWFQNRRARTKLKQTEVDCEFL+RCCENLT+ENRRLQKEV ELRALKLSPQFYMHM+PP
Sbjct: 181 EVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQFYMHMSPP 240

Query: 241 TTLTMCPSCERVAVPTSTSAPTTVTRVGQAQAQPHHARPIHLNPWASAI---PARPFNAL 279
           TTLTMCPSCE V+VP             QA    HH R + +N WA A        F+AL
Sbjct: 241 TTLTMCPSCEHVSVPPPQP---------QAATSAHH-RSLPVNAWAPATRISHGLTFDAL 284

[Close]

BLAST of CmaCh16G011220 vs. TAIR 10
Match: AT5G47370.1 (Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein )

HSP 1 Score: 272.7 bits (696), Expect = 3.2e-73
Identity = 176/299 (58.86%), Postives = 203/299 (67.89%), Query Frame = 0


Query: 1   MMAGKDDGLGLSLGLSLESQPHRHLQLNLMP--SWTNDASSDRTSET--GRSLLRGIDVN 60
           MM GK+D LGLSL L   SQ H  LQ+NL P  S +N+      ++T    S LR IDVN
Sbjct: 1   MMMGKED-LGLSLSLGF-SQNHNPLQMNLNPNSSLSNNLQRLPWNQTFDPTSDLRKIDVN 60

Query: 61  RIPPSMADCEEEAAMSSPNSTVSS-VSGKRSERE-------TNGEDLD---GDRDCFRGI 120
              PS  +CEE+  +SSPNST+SS +SGKRSERE        +G+D D    DR   RG 
Sbjct: 61  SF-PSTVNCEEDTGVSSPNSTISSTISGKRSEREGISGTGVGSGDDHDEITPDRGYSRGT 120

Query: 121 SDEED--GETSRKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQN 180
           SDEE+  GETSRKKLRL+KDQSA LE++FKEHNTLNPKQKLALAK+L L  RQVEVWFQN
Sbjct: 121 SDEEEDGGETSRKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQN 180

Query: 181 RRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMC 240
           RRARTKLKQTEVDCE+LKRC E LT+ENRRLQKE  ELR LKLSPQFY  MTPPTTL MC
Sbjct: 181 RRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELRTLKLSPQFYGQMTPPTTLIMC 240

Query: 241 PSCERVAVPTSTSAPTTVTRVGQAQAQPHHARPIHLNPWAS----AIPARPFNALHPRS 279
           PSCERV  P+S++               H+ RP+ +NPW +          F AL PRS
Sbjct: 241 PSCERVGGPSSSN-------------HHHNHRPVSINPWVACAGQVAHGLNFEALRPRS 283

[Close]

BLAST of CmaCh16G011220 vs. TAIR 10
Match: AT4G17460.1 (Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein )

HSP 1 Score: 265.4 bits (677), Expect = 5.2e-71
Identity = 171/303 (56.44%), Postives = 203/303 (67.00%), Query Frame = 0


Query: 1   MMAGKDD-GLGLSLGLSLESQPHRHLQLNLMPS-----------WTNDASSDRTSETGRS 60
           MM GK+D GL LSLG + ++ P   LQLNL P+           W N      + +  + 
Sbjct: 1   MMMGKEDLGLSLSLGFA-QNHP---LQLNLKPTSSPMSNLQMFPW-NQTLVSSSDQQKQQ 60

Query: 61  LLRGIDVNRIPPSMADCEEEAAMSSPNSTVSS-VSGKR--SERETN-----GEDLD--GD 120
            LR IDVN +P ++ D EEE  +SSPNST+SS VSGKR  +ERE       G+DLD   D
Sbjct: 61  FLRKIDVNSLPTTV-DLEEETGVSSPNSTISSTVSGKRRSTEREGTSGGGCGDDLDITLD 120

Query: 121 RDCFRGISDEED---GETSRKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPR 180
           R   RG SDEE+   GET RKKLRL+KDQSAVLED+FKEHNTLNPKQKLALAK+LGL  R
Sbjct: 121 RSSSRGTSDEEEDYGGETCRKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTAR 180

Query: 181 QVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRLQKEVQELRALKLSPQFYMHMT 240
           QVEVWFQNRRARTKLKQTEVDCE+LKRC E LT+ENRRL+KE  ELRALKLSP+ Y  M+
Sbjct: 181 QVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELRALKLSPRLYGQMS 240

Query: 241 PPTTLTMCPSCERVAVPTSTSAPTTVTRVGQAQAQPHHARPIHLNPWASAIPARPFNALH 279
           PPTTL MCPSCERVA P+S++               H+ R + L+PW        F+ + 
Sbjct: 241 PPTTLLMCPSCERVAGPSSSN---------------HNQRSVSLSPWLQMAHGSTFDVMR 282

[Close]

BLAST of CmaCh16G011220 vs. TAIR 10
Match: AT2G44910.1 (homeobox-leucine zipper protein 4 )

HSP 1 Score: 262.3 bits (669), Expect = 4.4e-70
Identity = 171/320 (53.44%), Postives = 201/320 (62.81%), Query Frame = 0


Query: 2   MAGKDDGLGLSLGLSLESQPHRHLQLNLMPSWTNDASS---------------------- 61
           M  +DDGLGLSL L    Q    L+LNLMP  T+ +SS                      
Sbjct: 1   MGERDDGLGLSLSLGNSQQKEPSLRLNLMPLTTSSSSSSFQHMHNQNNNSHPQKIHNISW 60

Query: 62  --------------DRTSETGRSLLRGIDVNRIPPSMA--DCEEEAA-MSSPNSTVSSVS 121
                         +R S+ G S LRG +VNR   S+A  D EEEAA +SSPNS VSS+S
Sbjct: 61  THLFQSSGIKRTTAERNSDAG-SFLRGFNVNRAQSSVAVVDLEEEAAVVSSPNSAVSSLS 120

Query: 122 GKRSERET--NGEDLDGDR-DCFR----GISDEED---GETSRKKLRLTKDQSAVLEDSF 181
           G + +      G++ + +R  C R    G SD+ED   G+ SRKKLRL+KDQ+ VLE++F
Sbjct: 121 GNKRDLAVARGGDENEAERASCSRGGGSGGSDDEDGGNGDGSRKKLRLSKDQALVLEETF 180

Query: 182 KEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENR 241
           KEH+TLNPKQKLALAKQL LR RQVEVWFQNRRARTKLKQTEVDCE+LKRCC+NLT+ENR
Sbjct: 181 KEHSTLNPKQKLALAKQLNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRCCDNLTEENR 240

Query: 242 RLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERV--------AVPTSTSAPTTVTRV 265
           RLQKEV ELRALKLSP  YMHMTPPTTLTMCPSCERV        A P++T+ PT V R 
Sbjct: 241 RLQKEVSELRALKLSPHLYMHMTPPTTLTMCPSCERVSSSAATVTAAPSTTTTPTVVGR- 300

[Close]

BLAST of CmaCh16G011220 vs. TAIR 10
Match: AT3G60390.1 (homeobox-leucine zipper protein 3 )

HSP 1 Score: 262.3 bits (669), Expect = 4.4e-70
Identity = 174/315 (55.24%), Postives = 205/315 (65.08%), Query Frame = 0


Query: 2   MAGKDDGLGLSLGLSLE-SQPHRHLQLNLMP--------------------------SWT 61
           M+ +DDGLGLSL LSL  +Q     +LN MP                          +W 
Sbjct: 1   MSERDDGLGLSLSLSLGFNQKDPSSRLNPMPLASYASSSHMQHMQQSNYNHPQKIQNTWI 60

Query: 62  NDASSDRTSETGRSLLRGIDVNRIPPS-MADCEEE-AAMSSPNSTVSSV-SGKRSERETN 121
           N   S   +   RS LRGIDVNR P + + D E+E A +SSPNSTVSSV SGK+SERE  
Sbjct: 61  NMFQSSERNSDMRSFLRGIDVNRAPSTVVVDVEDEGAGVSSPNSTVSSVMSGKKSERELM 120

Query: 122 G----------EDLDGDR-DC-FRGISDEEDG-----ETSRKKLRLTKDQSAVLEDSFKE 181
                      ED + +R  C   G SD+EDG     ++SRKKLRL+K+Q+ VLE++FKE
Sbjct: 121 AAAGAVGGGRVEDNEIERASCSLGGGSDDEDGSGNGDDSSRKKLRLSKEQALVLEETFKE 180

Query: 182 HNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTDENRRL 241
           H+TLNPKQK+ALAKQL LR RQVEVWFQNRRARTKLKQTEVDCE+LKRCCENLTDENRRL
Sbjct: 181 HSTLNPKQKMALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTDENRRL 240

Query: 242 QKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPTSTSAPTTVTRVGQAQAQPHHA 270
           QKEV ELRALKLSP  YMHM PPTTLTMCPSCERVAV +S+S+         +   P   
Sbjct: 241 QKEVSELRALKLSPHLYMHMKPPTTLTMCPSCERVAVTSSSSSVAPPVMNSSSPMGP--- 300

The following BLAST results are available for this feature:

BLAST of CmaCh16G011220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q05466	1.1e-76	58.88	Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana OX=3702 GN=HAT4 PE=...	[more]
P46601	4.6e-72	58.86	Homeobox-leucine zipper protein HAT2 OS=Arabidopsis thaliana OX=3702 GN=HAT2 PE=...	[more]
P46600	7.3e-70	56.44	Homeobox-leucine zipper protein HAT1 OS=Arabidopsis thaliana OX=3702 GN=HAT1 PE=...	[more]
P92953	6.2e-69	53.44	Homeobox-leucine zipper protein ATHB-4 OS=Arabidopsis thaliana OX=3702 GN=ATHB-4...	[more]
P46602	6.2e-69	55.24	Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana OX=3702 GN=HAT3 PE=...	[more]

BLAST of CmaCh16G011220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16780.1	7.5e-78	58.88	homeobox protein 2	[more]
AT5G47370.1	3.2e-73	58.86	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein	[more]
AT4G17460.1	5.2e-71	56.44	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein	[more]
AT2G44910.1	4.4e-70	53.44	homeobox-leucine zipper protein 4	[more]
AT3G60390.1	4.4e-70	55.24	homeobox-leucine zipper protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 170..207
None	No IPR available	GENE3D	1.10.10.60		coord: 121..167 e-value: 1.2E-20 score: 75.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..116
None	No IPR available	PANTHER	PTHR45714	FAMILY NOT NAMED	coord: 6..269
None	No IPR available	PANTHER	PTHR45714:SF3	HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN	coord: 6..269
IPR000047	Helix-turn-helix motif	PRINTS	PR00031	HTHREPRESSR	coord: 142..151 score: 45.44 coord: 151..167 score: 58.6
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 113..175 e-value: 3.8E-17 score: 73.0
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 115..169 e-value: 7.8E-17 score: 60.9
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 111..171 score: 17.475153
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 115..172 e-value: 6.42153E-16 score: 68.424
IPR003106	Leucine zipper, homeobox-associated	SMART	SM00340	halz	coord: 171..214 e-value: 1.8E-27 score: 107.2
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 171..205 e-value: 2.9E-11 score: 43.4
IPR006712	HD-ZIP protein, N-terminal	PFAM	PF04618	HD-ZIP_N	coord: 2..89 e-value: 2.4E-22 score: 79.5
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 146..169
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 106..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G011220.1	CmaCh16G011220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding