CmaCh16G011110 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G011110
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Gamma-glutamyl phosphate reductase
Location	Cma_Chr16: 8556083 .. 8561079 (-)
RNA-Seq Expression	CmaCh16G011110
Synteny	CmaCh16G011110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCGCTCGTGGACTGCGACTCCGAAGAGTTAGCCATCGCCCCTCGATTCGCATTCTCTGCCATAGCTCAAACCTTTGAGGTTTCAGTCATTCATTCCCATTGATTTCTCCCGCATCCGGAAAACGAAGAAGATGAGGAGATCGTCGAGCGCCTGCATTGTCTCGGATAAGAGATCATTAGCTTCATCATCGTCGTCGTCGCAATCCGCTATCTTCAGATCTTCCAGTGTGAGTTCCGGCTTGGAATCAGATGTTTTCCTGCCGACGTTCAATCCGTTCTCTCACGCGGCTGCGAAAAAACGTCGCCATCTTAAGCTCGCTAGGATTTTCGTCCATTTCATCCCTTTCGTCGTTATCTTCTGTGCTGTCGTTCTATGGTTCTTCTCCGATCCAGGTACTAAAATTACTCGAGTGAAAGATGCACGTACAACGAGATCGACTATTTGATATTAAAGATGACAAATAGCTTAGAAATATATTATTTCCCCCCCTATCGTTGTGGATAGCAATGGATTATCGCTTACACGTGCAAATAGAGTTCTTAAAATCATTAGGATCCTTGTCGCCGTCATGTATGCGCTTGTTGTTTCGATACTGGAAATGATTGATCTGAATAGAAGGAACGAGGATTAGTGGGGAAGTTGTTCTGAATCTGTGTTTGCTTATAGAAAACCGTTGAAGGACTTGAAATTAGATAGAGAAAATTGGTGTAAGGGTTTGCCACTATAACTTAGAGATCAGTAACCGTCCTGGCATAGTACTTATGAAGTCTGGATTAGGAATCAATTAAACATGATGTCGCTTTGTAGCCAAGATGTATTCAAATGACAGTGTATACTCTTTCGATTACGGAGCTTTCTTGTGAATGTATTGCTTAATCTGCTCTATCTATTGTGTCATTTGTCTACGTATCAGTTTGTTATTTTGCTCTCCATAGCGTGTAATTTAGAACTTCAGAACTTGGTATCTCTTACTGGTGTGATTGTTGGGACTGTTAACTGTTTAGTATTATTATTTCTTTTGTGGTAAGAAGAGATACGTATATACCTCAAAAGAACCAAAGGGCAGTCTAAGGGCAATTGGTAGAGGTTGCCCCTCATAAAACTAACAAAGGAAAGCCTTTCAATTGTTAATAATCATAAAAGGCTGTAATTACAAAAGAATTTTGTATTATTAAGCCAAAAAGAATCAAAAGAAGAAGACCTTTTTTTGAACACCTAGCTATTTCTTACCATCCAAATGCCCCATAGGAGGGATTGTGTAGCACATCACCAAAGGGCAACCCTTGCCGCCAAAAAATCTACCATCGAGCACCTCCATAAGCCAATGATCAATCTTTTTAGGTAAACGGGAATCCACTCCGAACGCTTAAAAAATTAGCCTGTCACCTTTTAGCCGCAAAAGGAGAATGTAGAATCAAGTGATGGATGGACTCCTCTTCTTGAACGCATAAACAGCATATAGAAGGAGCGATCATCCAATTTTGAAACTTCTTTTGTAGCTTATCGTCGGTATTCAAGCTTCTTGAGGCTAGCAACCATGAGAAGACTTTCACTTCCAGTGTAAACTGCTTAGTTTATCTAATCTTGTTACCAACTGGAGATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAACTGTTTAGTTTCTGCCATCTATTTGGCAGGTTTCTGAGCTTTCTCTATGCAGTCTTTGATAACAGTCAAAGATCTGCTTGTTAAGTTTAGTAGTCAAATATCCCGATGTCTTGCTCCATCATACGTAGTAAATATATGCATGTACTGGTAGTGCAGAATCTTTATATTCTACTACTTGTAACCTTAGTGACTGTATCTTTAAGGGGCTATGAACTAATCTCATTTTCATCATCTAATAGGTGAATATATCAGTAGCTTCAACCCAACTGTGGCCTTTCTTTCCTTCCTTGCACTGTAACAGTGTAACTTCACTTTTTGGTGAATGTAAAAAATCTAAACCTTTGGTACTCATCTAGGAGCAGCTGTTCAAGACTTAGTTACTCAACAATGCTCAAAAGGTTTTAGAACTCGAGTGGGCACTACCTTAGGTAGGATCATTCTATTTTAGAATCCTTTTCCTCCTTACCTAGCATGCTAGCAAGTTAAGTCACCCTTTTATGAGTTGTTCTCAGGGATTTTGACAACTCATTATGATATGTGTTAGTGGTATTATTTATTTCATCTCCTAGCTACTGTGTGGCATGGTAAGAAGGCGCTTAAAGAGTGCACTCATATTCTTCTCCGATTTGATTGGTGGTTTTATTTTAAGGAAAATAACTGGGAGTGTCAATAAGGGTTTAAGACATTGTTGGTGGTAATCTATTCAGGATTTAATATCTTACGAATATCCATGACTACTAGATGTAGAGAATAGTCGAGGTGGTTGCAAACTAGCTCCAACACTCATGGATATAAAGAAAAAAAGAAGAAGAAAAAATGGATATATTCATGAAAAGCTGAAAAATCTTGAATTGGATATTCATTGTAAAGCTTCACGTTCATTAACAGAGTTTGTTACCTTCAAGATTGGTTATGGTCTTGTTCTTTGAATCTGTCTTCTGTGTAGGACAACAGATATGGATGGAATTATTTCGTCTGAGACGTTACTTGAAGGGTTATTTACTCGAATTATCTCATTGGATGTTGTACATACAGAGCAAGGGGAAACAAAGTTGGAGCTTTGTTAGTTGCCAATAAATACTTTTCATTAAATAAAATTATGAATTAGAAAATATGTTGTGTTTGGTAAGTTTGTAGGCAGAAGATTTTCCTTTTGAAATCTTCGATTATTTCTTTAAAAACTGACTTCTCATCATATCAGTTTGTTATTCCCATATGATTAACTGTTAAAAGCTTCGTTTATTCGATACTTGTTTGGTTATCTTAGTGGCTATAAAACTGATGTAAATATATCTTCGATGGGAGATAGAACAGAGGACTAATTGAGAGCTTATTTAGTTCTGGTGGTTGCATAGTGGCTGTAGACTCAATAGGGTATCTTAAACTCTTATGTCTTTCTCCTTATCCTTAGTTCGGATTGTTTGTTCTTAAAACTCGGTATATTTTTAATCCAGGGTAACCTAGGTATTTAGTTCGATCTTCTGAAAATGTTTTAAGGTTTTTTGTGTCGCACCTAGTAGTTATGAGGCTAGTGAAGTACTTGAATATCCATCTTTTAACAATCAGTCAGAGGTCTTGTGGGTCCTCTGTGGATTTAGGACCCATAGTCAAACTGTTGAAATTAGTTCTGTAATTTGAGTTGCATAAGTTACTGCTGAAATTATGTCCTGTAATTTGATTTGACGTTAAATTCTCCAGATCAATAAACAGAACGTTTCAACTTCCTGTTTCTCAATGGGATTCTTAAACAAATTGTATTGTGCCCTTTGATTCTTCAGAAACTGTCCTTCCCTTTTGGAAGGGCGAAGCCAAAAGAATCAAACATAAATAAGAAACCAGGGATTTTCAGTTTGTTCATTACACACATTTCCTATAATGATATTCATCTAACCGTTTATTTGTACCATCACCTGATATGACTTGTGCAGGTTCGGGCCAGAGTATGTGAGTGGCCTTAGTATCCTTTTTAGATGGTCCCATGGATGTCACTTCTTTTTGTTGTACTGTCTGAAATCTGCAATGGTTTAATTTTGTTATGCATCTAATAGGTTGGCCATTGTATGTTGGAAGGCCCACCCATTGGGATCGTTCCATCAATATTGTTGTGCCTAAATCAATAATTTTCCTAGAATATTTAAGGCTAAATTATAAGTGGCAAAAATATGTTTATTATTTCGAAAGTTGTAACAATATTCTTCATTTTCATAAATATTTCAAAACTATCATTAGAGTTGAAATTCGTTGAAATTCAAAATTGAACGGTGTATTGGTACTGTTCTAGGTCATCGTCAAACTCATTCCATGTCTAAACTTTCTTCCAAAATTCTAAAAAACTTCTACCCAAGGTTAGTTTTGAAACATATATGAAAGGGTAAGAATAATATTGAAATTTTTAGGAAAATAAGGCTATTTTTTAAACAAATAACAGTTCAAAGATTACTTTTTTACAATTTAGTCAATATTTATTTCACATGAGTTGCCCACAAACGATCTAGAGAAAGAAAGAGAATATCCCTTTTAAGGTTTGTTTGATTTGAAGCACTTGAAAAGGTTATTTTAGATAGGCTGTTAATTACTGCTATTTTTCCACCTCTAGAAATTCAATACTGTTACAATGAAGTAATTTTGAATTCCAGTTTTGGTGCTGTTGGCAGGTTCACAACTCAACGTAGGATGAAAAACTTACCCAGATGGTTCGGGACAATCTTCGGCAATTGAGTACTGGAAGAATCCAATGAAGACGGCTGGATAAATTGCCCCCACATAATGGCATTCACAGGAAGGTTGTCGTGCAGCTGTTGTAGTTCTAGATAAGGCATTTCTGTTCTCTCTTTACTGTTCTTTTTCCCATCATCTTTATGACTCAACTTATAATGCTA

mRNA sequence

GTCCGCTCGTGGACTGCGACTCCGAAGAGTTAGCCATCGCCCCTCGATTCGCATTCTCTGCCATAGCTCAAACCTTTGAGGTTTCAGTCATTCATTCCCATTGATTTCTCCCGCATCCGGAAAACGAAGAAGATGAGGAGATCGTCGAGCGCCTGCATTGTCTCGGATAAGAGATCATTAGCTTCATCATCGTCGTCGTCGCAATCCGCTATCTTCAGATCTTCCAGTGTGAGTTCCGGCTTGGAATCAGATGTTTTCCTGCCGACGTTCAATCCGTTCTCTCACGCGGCTGCGAAAAAACGTCGCCATCTTAAGCTCGCTAGGATTTTCGTCCATTTCATCCCTTTCGTCGTTATCTTCTGTGCTGTCGTTCTATGGTTCTTCTCCGATCCAGGTTCACAACTCAACGTAGGATGAAAAACTTACCCAGATGGTTCGGGACAATCTTCGGCAATTGAGTACTGGAAGAATCCAATGAAGACGGCTGGATAAATTGCCCCCACATAATGGCATTCACAGGAAGGTTGTCGTGCAGCTGTTGTAGTTCTAGATAAGGCATTTCTGTTCTCTCTTTACTGTTCTTTTTCCCATCATCTTTATGACTCAACTTATAATGCTA

Coding sequence (CDS)

ATGAGGAGATCGTCGAGCGCCTGCATTGTCTCGGATAAGAGATCATTAGCTTCATCATCGTCGTCGTCGCAATCCGCTATCTTCAGATCTTCCAGTGTGAGTTCCGGCTTGGAATCAGATGTTTTCCTGCCGACGTTCAATCCGTTCTCTCACGCGGCTGCGAAAAAACGTCGCCATCTTAAGCTCGCTAGGATTTTCGTCCATTTCATCCCTTTCGTCGTTATCTTCTGTGCTGTCGTTCTATGGTTCTTCTCCGATCCAGGTTCACAACTCAACGTAGGATGA

Protein sequence

MRRSSSACIVSDKRSLASSSSSSQSAIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRRHLKLARIFVHFIPFVVIFCAVVLWFFSDPGSQLNVG

Homology

[Close]

BLAST of CmaCh16G011110 vs. TAIR 10
Match: AT2G35658.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-11
Identity = 40/91 (43.96%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MRRSSSACIVSDKRSLASSSSSSQSAIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRRHL 60
          MRRS+SA IVSD+ S  S S S      ++S+ S   +S + LP ++P SH   K +   
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSD--DSHLLLPRYDPNSHPGKKNKSRF 60

Query: 61 KLARIFVHFIPFVVIFCAVVLWFFSDPGSQL 92
          + A   +HFIP V+I CAV+LW FS+PG+Q+
Sbjct: 61 RSAENAIHFIPIVLILCAVILWMFSNPGNQI 89

[Close]

BLAST of CmaCh16G011110 vs. TAIR 10
Match: AT2G35658.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 6.6e-10
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 1  MRRSSSACIVSDKRSLASSSSSSQSAIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRRHL 60
          MRRS+SA IVSD+ S  S S S      ++S+ S   +S + LP ++P SH   K +   
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSD--DSHLLLPRYDPNSHPGKKNKSRF 60

Query: 61 KLARIFVHFIPFVVIFCAVVLWFFSDPGSQL 92
          + A   +HFIP V+I CAV+LW FS+P +++
Sbjct: 61 RSAENAIHFIPIVLILCAVILWMFSNPVAKI 89

[Close]

BLAST of CmaCh16G011110 vs. TAIR 10
Match: AT2G35658.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-09
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 1  MRRSSSACIVSDKRSLASSSSSSQSAIFRSSSVSSGLESDVFLPTFNPFSHAAAKKRRHL 60
          MRRS+SA IVSD+ S  S S S      ++S+ S   +S + LP ++P SH   K +   
Sbjct: 1  MRRSASASIVSDQLSANSPSPSPSPPRIKTSADSD--DSHLLLPRYDPNSHPGKKNKSRF 60

Query: 61 KLARIFVHFIPFVVIFCAVVLWFFSDP 88
          + A   +HFIP V+I CAV+LW FS+P
Sbjct: 61 RSAENAIHFIPIVLILCAVILWMFSNP 85

[Close]

BLAST of CmaCh16G011110 vs. TAIR 10
Match: AT5G07490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61630.1); Has 50 Blast hits to 50 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.2e-05
Identity = 25/59 (42.37%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 36 GLESDVFLPTFNPFSHAAAKKRR-HLKLARIFVHFIPFVVIFCAVVLWFFSDPGSQLNV 94
          GL+ D   P ++P      KK +   K A   VH IPFV++ CA+VLWFFS+P   + V
Sbjct: 27 GLDEDEPAP-YDPTGQEMTKKEKSRTKFAENAVHIIPFVLLACALVLWFFSNPDVDVGV 84

[Close]

BLAST of CmaCh16G011110 vs. TAIR 10
Match: AT5G61630.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G07490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.8e-04
Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 43 LPTF-NPFSHAAAKKRRHLKLARIFVHFIPFVVIFCAVVLWFFSDP 88
          LP++ NP      K++   K A   +H IPFV++ CA+VLW FS+P
Sbjct: 36 LPSYNNPPEEMVKKEKSRAKFAENAIHIIPFVLLACALVLWLFSNP 81

The following BLAST results are available for this feature:

BLAST of CmaCh16G011110 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G011110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35658.2	2.0e-11	43.96	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35658.1	6.6e-10	41.76	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G35658.3	1.9e-09	43.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G07490.1	2.2e-05	42.37	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G61630.1	1.8e-04	43.48	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34189:SF13	TRANSMEMBRANE PROTEIN	coord: 1..90
None	No IPR available	PANTHER	PTHR34189	TRANSMEMBRANE PROTEIN	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G011110.1	CmaCh16G011110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane