CmaCh16G011100 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G011100
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	50S ribosomal protein L19
Location	Cma_Chr16: 8541574 .. 8544829 (-)
RNA-Seq Expression	CmaCh16G011100
Synteny	CmaCh16G011100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCAAAGAGAATAAAAATGCAGTCACTGCCATGATTCCCTCTCTTTATCTCTAATTTTCTCCCATTTCTCCACTTCAGAAGCTTCCAATTCCTTCATCAATGGCCACCAAGATTCTTCCTCAGGTACGGTACTTCCTGCTATCGTCTTTTTTGTAATCTTTCAGTATTCCCTTTCTAATCTTCTATCGCATTAACCTCATATCTTTTGTTTCAAGGCCGTGATTTCTGTTCCAAGAACCCCCAATCAATGTGCGCCGAGAAGATTAGGGTTTTGTTCCGCAATTTCTGCTACTCGGCTTTCGTTTTCTACTCTTTCCTCGAGTTCAATCGGCTGCCATTTTCACCATACTGTTTCGGCGCCGATGAAACGGGCGTTTGTTGTGAGAGCTGAGGCGGATTCCGAAGCAGAGTCGGCGAGCGATGAGGAAAATGTGGATAAAACCGTTGGAGAAGCTCCTCAAGGTGTAGTAGAAGCAGTAGCGGAGTCTGATGGCCAGCCTGAGGCGGAGAAGCCGCCGAGAAAGCCTCGAGTTAAGCTTGGAGATGTATTGGGGGTAATTATTCTATCCACTCCTCTTCATTAATGAACACAAACTTTGTTGTAGGTTAGAAATCACGACCCTCTACAATAGTACGATATTGTCCACTTTGAATATAAGCACTAGTGGCTTTGCTTTGAACTTCCCAAAAGACCGCATACCAATGAAAATGTATTAATCAATGTGGGACTCCCTCTCAACAATCTTCCTTTCAGATAAAGTACACTACAGAGCCTCCCTTTAAGCCTATGAAGCCTTCGAATAACCTCTCCTTAATCAAAGTTGGACTCCATCTCTAAGGTCCTCGAACAAAGTACACTCTTTGTTCGACACCTGTGTCACTTTTGACTATACTTTTGAGGTTTATAACTTCTTTGTTCGACATTTGAGAATTCTATTAACATGACTAAGTTAAGAGCATGACCTTGATACCATGTTAGGAATCACGACCCTCCACAATGGTATGATATTGTCCATTTTGAGCATAAGCTTTCATGACTTTGTTTTCGATTTTCCCAAAATGCCTCATACCTAAATTAACCAACGTGGAACTCCCTTCCAACAATCTTCGACACTAAATTTAGGAACACAATTTTTCTTGCAAACCAGAAGTATAATTCTGTACTGATTCTTTTGAATTATATTCAATTCTTCCGAACGTTTGAATTGTTAAATCAACTGCTGAAGAATTGAAGTGTGATCCTGCGGTTCATAGAAACTCATTACAGTATTGTGTTGTATAAGATTTCAGCTATAGTTGGTGAAATTTCACAATATAGGAATTGTCTCATCTACTAGTTAGAGGGTATCATAATTTGAATTTGGTTTTAGTTTTGTTGATCTTTAAACTTCTGGGTAGATACTTAATAAGCGAGCAGTTGAAGCGTCGGAGAAGGCGAGGCCGATTCCAGACATTAGAACCGGTGACATTGTGGAAGTTAAACTGGTAAATTTTGTTCTTAATCTTTGTAGTCTAAACTCATATGAAAGTGCAAGGTTTTTTTATACTGTTTTTGATAAAAATGTTACTACTACTACTACAGGAAGTTCCAGAAAATAGGCGTAGGCTTTCTGTTTATAGAGGAATTGTCATGTCAAAACAAAATGCTGGCATCCACACTACGATTAGAATTCGCAAAATTATTGCTGGTGTGGGCGTGGAGATTGTTTTTCCGCTGTAAGTATTGAGTTCATCTTGATTTCTTTCTGGAATCTAATATATGCTGTCTGTAGAATATGATTGTGCTCCATTTCAATCTCACTTGCTGATGAACTCATTAAGCACACGGAAGGTGTAACAACCTAAGCCCACCGCTAGCAGATATTGTCTACTTTGGCCCGTTACGTATCGCTGTCAGTCTCACGGTTTTATAACGTGCCTCTTAGGAAGAGGTTTTCACACCCTTGTAAGAAATGTTTTTTTCCCCCTCTCCAACCCATGTAAGATCTCACAATCTACTCCTTGGAGGCCCAAAATCCTTGCTGATACACTGCTCGGTGTCTGACTCTGATACCATTTGTAACATCCCAAGCCTATCGCTAGCAGATATTGTCTGCTTTGGTCCGTTACGTATCGCCGTCAGCCTCACGGTCTTAAAACGTGTCTCTTAGGGAGAGGTTTCCACATCCTTATAAGAAATGTTTTGTTCCCCTCTCCAACCGATGTGGGGTCTCACAATCCACCTCCTTGGGGGACTAACGTCCTCACTGACACATCGTCTGATGTCTAGCTCTGATACCATTTGTAACAGCCCAGACTCAACACTAGCATATATTGTCTGCTTTGGCCCGTTACGTATAACTATCAGCTTCACAGTTTTAACGCGTCTCTTAGGGAGAGGTTTCCACACCCTTATAAGGAATGCTTTGTTCCTCTCTCCAAATTTTTTAAAAAGGAGTGAATAAACTATCTGGATTTGGATGACCTTAGAACACTTTTGGTTTCAGAATCTGTTTATTTGAACATAAAATTGATTGTTCTCCAGAACAATCTCACATGCTGATTCAGTTATAAAGCAATACTACCCGGGGTTTGGATGAGTTGAGGAAACTCGAACCTTGTTACAGATTTTGGTCTTAAATTCCTCTTTTCATAATAGTAAAGCCCTCCACCAAACCAACCAAAAATAAGAAGGAAGAAGTACCAAATCCATCAAAATTAGATGAAACCAAAACATGGGCCAATGCTTTGACAGGCTCCTCTTGGCTTGCTGACAAGGTTGTTATCAAAACTTAATGAACTGATAAATATCCGATGCGCTATACTCTAAGCAACGACATACTCGTGCCTGAAGTTCTTGTCGATCGTTAGATACCGGATTGATTTTTCATTTCCTGCTTGGTTACTTCTGTGGGATTTGACCTCATGATAACATTCTACTGCAGGTACTCACCAAACATCAAAGGGATAAAAGTGGTGAGCCACAGGAAGGTGAGGAGGGCAAGATTATATTATTTGAGAGACAAACTTCCAAGACTCTCTACTTTCAAGTGAAACACCCCAATGGATTGACCATCAACGTTATGTTTCTTGTTATAATTCAAAATTTCATGTTTTCTTTTTCTTAGATTTGCACATTATTCTTCTGTATATCGTCATTAATTATATATATGAGCAGCAGGGGTTTCATGAAAGGTACTGTCCTGGATTCACATTCTTGCACATGTCCCCAAGCTTCTTTACCATTACTGATCCCATTACTTGGCTTCTTCTCA

mRNA sequence

TCTCCAAAGAGAATAAAAATGCAGTCACTGCCATGATTCCCTCTCTTTATCTCTAATTTTCTCCCATTTCTCCACTTCAGAAGCTTCCAATTCCTTCATCAATGGCCACCAAGATTCTTCCTCAGGCCGTGATTTCTGTTCCAAGAACCCCCAATCAATGTGCGCCGAGAAGATTAGGGTTTTGTTCCGCAATTTCTGCTACTCGGCTTTCGTTTTCTACTCTTTCCTCGAGTTCAATCGGCTGCCATTTTCACCATACTGTTTCGGCGCCGATGAAACGGGCGTTTGTTGTGAGAGCTGAGGCGGATTCCGAAGCAGAGTCGGCGAGCGATGAGGAAAATGTGGATAAAACCGTTGGAGAAGCTCCTCAAGGTGTAGTAGAAGCAGTAGCGGAGTCTGATGGCCAGCCTGAGGCGGAGAAGCCGCCGAGAAAGCCTCGAGTTAAGCTTGGAGATGTATTGGGGATACTTAATAAGCGAGCAGTTGAAGCGTCGGAGAAGGCGAGGCCGATTCCAGACATTAGAACCGGTGACATTGTGGAAGTTAAACTGGAAGTTCCAGAAAATAGGCGTAGGCTTTCTGTTTATAGAGGAATTGTCATGTCAAAACAAAATGCTGGCATCCACACTACGATTAGAATTCGCAAAATTATTGCTGGTGTGGGCGTGGAGATTGTTTTTCCGCTGTACTCACCAAACATCAAAGGGATAAAAGTGGTGAGCCACAGGAAGGTGAGGAGGGCAAGATTATATTATTTGAGAGACAAACTTCCAAGACTCTCTACTTTCAAGTGAAACACCCCAATGGATTGACCATCAACGTTATGTTTCTTGTTATAATTCAAAATTTCATGTTTTCTTTTTCTTAGATTTGCACATTATTCTTCTGTATATCGTCATTAATTATATATATGAGCAGCAGGGGTTTCATGAAAGGTACTGTCCTGGATTCACATTCTTGCACATGTCCCCAAGCTTCTTTACCATTACTGATCCCATTACTTGGCTTCTTCTCA

Coding sequence (CDS)

ATGGCCACCAAGATTCTTCCTCAGGCCGTGATTTCTGTTCCAAGAACCCCCAATCAATGTGCGCCGAGAAGATTAGGGTTTTGTTCCGCAATTTCTGCTACTCGGCTTTCGTTTTCTACTCTTTCCTCGAGTTCAATCGGCTGCCATTTTCACCATACTGTTTCGGCGCCGATGAAACGGGCGTTTGTTGTGAGAGCTGAGGCGGATTCCGAAGCAGAGTCGGCGAGCGATGAGGAAAATGTGGATAAAACCGTTGGAGAAGCTCCTCAAGGTGTAGTAGAAGCAGTAGCGGAGTCTGATGGCCAGCCTGAGGCGGAGAAGCCGCCGAGAAAGCCTCGAGTTAAGCTTGGAGATGTATTGGGGATACTTAATAAGCGAGCAGTTGAAGCGTCGGAGAAGGCGAGGCCGATTCCAGACATTAGAACCGGTGACATTGTGGAAGTTAAACTGGAAGTTCCAGAAAATAGGCGTAGGCTTTCTGTTTATAGAGGAATTGTCATGTCAAAACAAAATGCTGGCATCCACACTACGATTAGAATTCGCAAAATTATTGCTGGTGTGGGCGTGGAGATTGTTTTTCCGCTGTACTCACCAAACATCAAAGGGATAAAAGTGGTGAGCCACAGGAAGGTGAGGAGGGCAAGATTATATTATTTGAGAGACAAACTTCCAAGACTCTCTACTTTCAAGTGA

Protein sequence

MATKILPQAVISVPRTPNQCAPRRLGFCSAISATRLSFSTLSSSSIGCHFHHTVSAPMKRAFVVRAEADSEAESASDEENVDKTVGEAPQGVVEAVAESDGQPEAEKPPRKPRVKLGDVLGILNKRAVEASEKARPIPDIRTGDIVEVKLEVPENRRRLSVYRGIVMSKQNAGIHTTIRIRKIIAGVGVEIVFPLYSPNIKGIKVVSHRKVRRARLYYLRDKLPRLSTFK

Homology

[Close]

BLAST of CmaCh16G011100 vs. ExPASy Swiss-Prot
Match: Q8W463 (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.2e-64
Identity = 139/231 (60.17%), Postives = 173/231 (74.89%), Query Frame = 0


Query: 6   LPQAVISVPRTPNQCAPRRLGFCSAISA-----TRLSFSTLSSSSIGCHFHHTVSAPMKR 65
           LPQA+  +PR P Q + + LGF S +S      +R+S S LS +  G  F  ++   ++ 
Sbjct: 8   LPQALHMIPRNPTQ-SSKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSLDTRVRN 67

Query: 66  AFVVRA-EADSEAESASDEENVDKTVGEAPQGVVEAVAESDGQPEAEKPPRKPRVKLGDV 125
            F+VRA E ++EAES      +  T     +G VE V E+       KP RKPR+KLGDV
Sbjct: 68  EFIVRAEEGNTEAESEEFVAEIADT-----EGNVEEVVEA-------KPTRKPRIKLGDV 127

Query: 126 LGILNKRAVEASEKARPIPDIRTGDIVEVKLEVPENRRRLSVYRGIVMSKQNAGIHTTIR 185
           +GILN++A+E +EK RP+P+IRTGDIVE+KLEVPEN+RRLS+Y+GIVMS+QNAGIHTTIR
Sbjct: 128 MGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIR 187

Query: 186 IRKIIAGVGVEIVFPLYSPNIKGIKVVSHRKVRRARLYYLRDKLPRLSTFK 231
           IR+IIAG+GVEIVFP+YSPNIK IKVVSHRKVRRARLYYLRDKLPRLSTFK
Sbjct: 188 IRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 225

[Close]

BLAST of CmaCh16G011100 vs. ExPASy Swiss-Prot
Match: P82413 (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 PE=1 SV=2)

HSP 1 Score: 239.6 bits (610), Expect = 3.6e-62
Identity = 140/242 (57.85%), Postives = 176/242 (72.73%), Query Frame = 0


Query: 1   MATKILPQAVISVPRTPN-QCAP--RRLGF---------CSAISATRLSFSTLSSSSIGC 60
           MA+K+LPQA++ +P   + QC P  ++LGF          S+   + L  S  SS+    
Sbjct: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60

Query: 61  HFHHTVSAPMKRAFVVRAEADSEAESASDEENVDKTVGEAPQGVVEAVAESDGQPEAEKP 120
           +F    S P + +FVVR    SEAE +SD       V    +  VE+ AE++     E+P
Sbjct: 61  NFSSIFSFPARNSFVVR----SEAEDSSDAPAESVAVVAEEELPVESEAEAE-----ERP 120

Query: 121 PRKPRVKLGDVLGILNKRAVEASEKARPIPDIRTGDIVEVKLEVPENRRRLSVYRGIVMS 180
           PR+ RVKLGD++GILNK+AV A+E+ RP+P IRTGDIV+++LEVPEN+RRLSVY+GIV+S
Sbjct: 121 PRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVIS 180

Query: 181 KQNAGIHTTIRIRKIIAGVGVEIVFPLYSPNIKGIKVVSHRKVRRARLYYLRDKLPRLST 231
           +QNAGIHTTIRIR+IIAGVGVEIVFPLYSPNIK IKVVSHRKVR+ARLYYLRDKLPRLST
Sbjct: 181 RQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLST 233

[Close]

BLAST of CmaCh16G011100 vs. ExPASy Swiss-Prot
Match: Q8RXX5 (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 5.1e-61
Identity = 130/238 (54.62%), Postives = 170/238 (71.43%), Query Frame = 0


Query: 2   ATKILPQAVISVPRTPNQCAPRRLGFCSAISA-----TRLSFSTLSSSSIGCHFHHTVSA 61
           ++ +LPQA+  +PRTP+  + + LG  S +       +RLS S +  +    +F   + +
Sbjct: 4   SSHLLPQALHMIPRTPS-FSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAIDS 63

Query: 62  PMKRAFVVRAEADSEAESASDEENVDKTVGEAPQGVVEAVAESDGQ----PEAEKPPRKP 121
             ++ F+ +AE  +E E+ +  EN            VE  AE +G+     E  KPP K 
Sbjct: 64  KKRKEFIAKAEESTEGETEAVVEN-----------AVETEAEGEGEATVAAEEAKPPWKT 123

Query: 122 RVKLGDVLGILNKRAVEASEKARPIPDIRTGDIVEVKLEVPENRRRLSVYRGIVMSKQNA 181
           RVKLGD++G+LNK+A+E +E  RP+P +RTGDIVE+KLEVPEN+RRLS+Y+GIVMS+QNA
Sbjct: 124 RVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNA 183

Query: 182 GIHTTIRIRKIIAGVGVEIVFPLYSPNIKGIKVVSHRKVRRARLYYLRDKLPRLSTFK 231
           GIHTTIRIR+IIAG+GVEIVFP+YSPNIK IKVVSHRKVRRARLYYLRDKLPRLSTFK
Sbjct: 184 GIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 229

[Close]

BLAST of CmaCh16G011100 vs. ExPASy Swiss-Prot
Match: B2JA71 (50S ribosomal protein L19 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rplS PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-19
Identity = 49/106 (46.23%), Postives = 73/106 (68.87%), Query Frame = 0


Query: 126 RAVEASEKARPIPDIRTGDIVEVKLEVPENRR-RLSVYRGIVMSKQNAGIHTTIRIRKII 185
           R++EA +    +PDI  GD V+V +++ E  + R+  Y G+V++K+N GI+ TI +RK+ 
Sbjct: 8   RSIEAEQLKSNLPDIYVGDTVKVGVKIKEGEKYRVQPYEGVVIAKRNGGINETITVRKVF 67

Query: 186 AGVGVEIVFPLYSPNIKGIKVVSHRKVRRARLYYLRDKLPRLSTFK 231
            GVGVE VF L+SP I  IKV+   KVRRA+LYYLRD++ + +  K
Sbjct: 68  QGVGVERVFLLHSPRIDSIKVLRRGKVRRAKLYYLRDRVGKATRIK 113

[Close]

BLAST of CmaCh16G011100 vs. ExPASy Swiss-Prot
Match: B8HT34 (50S ribosomal protein L19 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rplS PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.8e-19
Identity = 48/106 (45.28%), Postives = 74/106 (69.81%), Query Frame = 0


Query: 126 RAVEASEKARPIPDIRTGDIVEVKLEVPE-NRRRLSVYRGIVMSKQNAGIHTTIRIRKII 185
           R++EA +    +P+I  GD V+V + + E N+ R   Y GIV++K+N+GI+ TI +R+I 
Sbjct: 8   RSLEAEQLKSNLPEIHVGDTVKVGVIIQEGNKERTQPYEGIVIAKRNSGINATITVRRIF 67

Query: 186 AGVGVEIVFPLYSPNIKGIKVVSHRKVRRARLYYLRDKLPRLSTFK 231
            GVGVE VF L+SP ++ IK++   KVRRA+LYYLRD++ + +  K
Sbjct: 68  QGVGVERVFLLHSPRVESIKIIKRGKVRRAKLYYLRDRVGKATRVK 113

[Close]

BLAST of CmaCh16G011100 vs. TAIR 10
Match: AT4G17560.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 246.9 bits (629), Expect = 1.6e-65
Identity = 139/231 (60.17%), Postives = 173/231 (74.89%), Query Frame = 0


Query: 6   LPQAVISVPRTPNQCAPRRLGFCSAISA-----TRLSFSTLSSSSIGCHFHHTVSAPMKR 65
           LPQA+  +PR P Q + + LGF S +S      +R+S S LS +  G  F  ++   ++ 
Sbjct: 8   LPQALHMIPRNPTQ-SSKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSLDTRVRN 67

Query: 66  AFVVRA-EADSEAESASDEENVDKTVGEAPQGVVEAVAESDGQPEAEKPPRKPRVKLGDV 125
            F+VRA E ++EAES      +  T     +G VE V E+       KP RKPR+KLGDV
Sbjct: 68  EFIVRAEEGNTEAESEEFVAEIADT-----EGNVEEVVEA-------KPTRKPRIKLGDV 127

Query: 126 LGILNKRAVEASEKARPIPDIRTGDIVEVKLEVPENRRRLSVYRGIVMSKQNAGIHTTIR 185
           +GILN++A+E +EK RP+P+IRTGDIVE+KLEVPEN+RRLS+Y+GIVMS+QNAGIHTTIR
Sbjct: 128 MGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIR 187

Query: 186 IRKIIAGVGVEIVFPLYSPNIKGIKVVSHRKVRRARLYYLRDKLPRLSTFK 231
           IR+IIAG+GVEIVFP+YSPNIK IKVVSHRKVRRARLYYLRDKLPRLSTFK
Sbjct: 188 IRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 225

[Close]

BLAST of CmaCh16G011100 vs. TAIR 10
Match: AT5G47190.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 235.7 bits (600), Expect = 3.6e-62
Identity = 130/238 (54.62%), Postives = 170/238 (71.43%), Query Frame = 0


Query: 2   ATKILPQAVISVPRTPNQCAPRRLGFCSAISA-----TRLSFSTLSSSSIGCHFHHTVSA 61
           ++ +LPQA+  +PRTP+  + + LG  S +       +RLS S +  +    +F   + +
Sbjct: 4   SSHLLPQALHMIPRTPS-FSSKNLGVSSILPRASSVNSRLSVSRVFLNHSSSNFGFAIDS 63

Query: 62  PMKRAFVVRAEADSEAESASDEENVDKTVGEAPQGVVEAVAESDGQ----PEAEKPPRKP 121
             ++ F+ +AE  +E E+ +  EN            VE  AE +G+     E  KPP K 
Sbjct: 64  KKRKEFIAKAEESTEGETEAVVEN-----------AVETEAEGEGEATVAAEEAKPPWKT 123

Query: 122 RVKLGDVLGILNKRAVEASEKARPIPDIRTGDIVEVKLEVPENRRRLSVYRGIVMSKQNA 181
           RVKLGD++G+LNK+A+E +E  RP+P +RTGDIVE+KLEVPEN+RRLS+Y+GIVMS+QNA
Sbjct: 124 RVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNA 183

Query: 182 GIHTTIRIRKIIAGVGVEIVFPLYSPNIKGIKVVSHRKVRRARLYYLRDKLPRLSTFK 231
           GIHTTIRIR+IIAG+GVEIVFP+YSPNIK IKVVSHRKVRRARLYYLRDKLPRLSTFK
Sbjct: 184 GIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 229

[Close]

BLAST of CmaCh16G011100 vs. TAIR 10
Match: AT4G11630.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-30
Identity = 66/132 (50.00%), Postives = 101/132 (76.52%), Query Frame = 0


Query: 101 GQPEAE-KPPRKPRVKLGD-----VLGILNKRAVEASEKARPIPDIRTGDIVEVKLEVPE 160
           G PE++   P++ + K  D     ++ I++K AVE     R IP+I+ G IV++K+EVPE
Sbjct: 91  GSPESDCVVPQRIKFKRLDKTAKHIMQIVDKEAVEEVRSLREIPEIKPGYIVQLKVEVPE 150

Query: 161 NRRRLSVYRGIVMSKQNAGIHTTIRIRKIIAGVGVEIVFPLYSPNIKGIKVVSHRKVRRA 220
           N+RR+S+ +G+V++++NAG+++T RIR+++AGVGVE +FPLYSPN++ IKVV  +KVRRA
Sbjct: 151 NKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPLYSPNLREIKVVDKKKVRRA 210

Query: 221 RLYYLRDKLPRL 227
           +LYYLRDK+  L
Sbjct: 211 KLYYLRDKVNAL 222

[Close]

BLAST of CmaCh16G011100 vs. TAIR 10
Match: AT5G11750.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 129.8 bits (325), Expect = 2.8e-30
Identity = 69/144 (47.92%), Postives = 104/144 (72.22%), Query Frame = 0


Query: 84  TVGEAPQGVVEAVAESD-GQPEAEKPPRKPRVKLGDVLGILNKRAVEASEKARPIPDIRT 143
           T G++ Q   +   ESD   P+  K  R  +     ++ I++K AVE     R IP+I+ 
Sbjct: 84  TTGDSVQSTPQGSPESDCVVPQRIKFKRLDKT-AKHIMQIVDKEAVEEVRNLREIPEIKP 143

Query: 144 GDIVEVKLEVPENRRRLSVYRGIVMSKQNAGIHTTIRIRKIIAGVGVEIVFPLYSPNIKG 203
           G IV++K+EVPEN+RR+S+ +G+V++++NAG+++T RIR+++AGVGVE +FPLYSPN++ 
Sbjct: 144 GYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPLYSPNLRE 203

Query: 204 IKVVSHRKVRRARLYYLRDKLPRL 227
           IKVV  +KVRRA+LYYLRDK+  L
Sbjct: 204 IKVVDKKKVRRAKLYYLRDKVNAL 226

[Close]

BLAST of CmaCh16G011100 vs. TAIR 10
Match: AT1G24240.1 (Ribosomal protein L19 family protein )

HSP 1 Score: 128.3 bits (321), Expect = 8.2e-30
Identity = 65/132 (49.24%), Postives = 101/132 (76.52%), Query Frame = 0


Query: 101 GQPEAE-KPPRKPRVKLGD-----VLGILNKRAVEASEKARPIPDIRTGDIVEVKLEVPE 160
           G PE++   P++ + K  D     ++ I++K AVE     R IP+I+ G IV++K+EVPE
Sbjct: 88  GSPESDCVVPQRIKFKRLDKTAKHIMQIVDKEAVEEVRTLREIPEIKPGYIVQLKVEVPE 147

Query: 161 NRRRLSVYRGIVMSKQNAGIHTTIRIRKIIAGVGVEIVFPLYSPNIKGIKVVSHRKVRRA 220
           N+RR+S+ +G+V++++NAG+++T RIR+++AGVGVE +FPLYSPN++ IKVV  +KVRRA
Sbjct: 148 NKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPLYSPNLRVIKVVDKKKVRRA 207

Query: 221 RLYYLRDKLPRL 227
           +LYYLR+K+  L
Sbjct: 208 KLYYLREKVNAL 219

The following BLAST results are available for this feature:

BLAST of CmaCh16G011100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W463	2.2e-64	60.17	50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
P82413	3.6e-62	57.85	50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL19 P...	[more]
Q8RXX5	5.1e-61	54.62	50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
B2JA71	2.2e-19	46.23	50S ribosomal protein L19 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ...	[more]
B8HT34	2.8e-19	45.28	50S ribosomal protein L19 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]

BLAST of CmaCh16G011100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17560.1	1.6e-65	60.17	Ribosomal protein L19 family protein	[more]
AT5G47190.1	3.6e-62	54.62	Ribosomal protein L19 family protein	[more]
AT4G11630.1	1.7e-30	50.00	Ribosomal protein L19 family protein	[more]
AT5G11750.1	2.8e-30	47.92	Ribosomal protein L19 family protein	[more]
AT1G24240.1	8.2e-30	49.24	Ribosomal protein L19 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001857	Ribosomal protein L19	PRINTS	PR00061	RIBOSOMALL19	coord: 183..206 score: 45.14 coord: 124..153 score: 25.0
IPR001857	Ribosomal protein L19	PFAM	PF01245	Ribosomal_L19	coord: 127..224 e-value: 1.1E-31 score: 109.0
IPR001857	Ribosomal protein L19	TIGRFAM	TIGR01024	TIGR01024	coord: 128..222 e-value: 7.4E-29 score: 98.2
IPR001857	Ribosomal protein L19	PANTHER	PTHR15680	RIBOSOMAL PROTEIN L19	coord: 1..230
IPR038657	Ribosomal protein L19 superfamily	GENE3D	2.30.30.790		coord: 118..229 e-value: 1.5E-31 score: 110.8
None	No IPR available	PANTHER	PTHR15680:SF10	50S RIBOSOMAL PROTEIN L19-1, CHLOROPLASTIC-RELATED	coord: 1..230
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 127..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G011100.1	CmaCh16G011100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome