CmaCh16G011060 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G011060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ATP-dependent Clp protease proteolytic subunit
Location	Cma_Chr16: 8499780 .. 8501441 (+)
RNA-Seq Expression	CmaCh16G011060
Synteny	CmaCh16G011060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATACGAAATATGAAGGCAGAACTGGTAAGATCATGGTTGAAATTAGATTAATGGATTGCCTTCTCTTCATTCCCGTATTATAGATTTAAAAATATCTATTAGTTTGACAACCAAATATAGTATGATTTGTCCAATGAAAATAGTCGAGGTGCATAAACTAAACTAAACTATGAGATCCCACGTCGGTTGGTGGAGGAGAACAAAGCATTTTTTATAAGGGTGTGAAAACCTCTCCTTAGCAGACGTGTTTTAGAAATCCTGAGGGGAAGCCAGAAAGAGGAAGCCCAAAGAGAACAATATTTACTAGCTGTGGGCTTGGACTATTACAAATGGTATCAGAGCTAGATACCGGGTGATGTGCCAGGGAGGAGGTTGAGGCCCCAAAAGACGTTAGGCTTGAAGGGGGTGGATTGGAGGATCCCACATCGATTGGAGGAGGGAATTAGTGCTAGCGAGGACGCTGGGTCCTGAAGGAAGGTGAATTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAGCATTTTTTATAAAGGTGTGGAAACCTAGCAGATGCGTTTTAAAAACCTTGAGGGAAGCTCGAAAGGGAAAACCAAAAAAGGACAATATCTACTAGCGGTGGGTTTGGACCATTACAAATGGTATCAGAGCTAGACATCGGATGATGTACTAGCAAGTGAAGGGGGTGGACACGTGACGGTGTACCAACAAGAACACTAAACCTCAAAGAGGATGAATTGGGGGATCCCACACTGAGTGGAGAAGGGAATGAGTGTCCGCAAAGATACTGGACCTTGAAGGGAGGTGGATTGTGAGATCTCACATCGGTTGGGGAGAAGAACGAATCATTATTTATAAAGGTGTGGAAACGTAGCAAACACATTCTAAAAACCTCAAGGAAACACCCAAAGAGGACAATATTTACTTATAGTGGGCTTGGGCCGTTACATAAAAACTCATGGATATTGAGGTTATAGAAAGGGGTAGGACAGGAGGCATTTTTTCTAGCTCATTAGGATTGACTGGAATGTTGAAAAGTTCTATTTCTTTCTAGTCATAGATTCCATGCCAACCTCACATTCCACCAATGGACAGCAGCATGGTTCAGGACTGTAAAGTTGAAAATTTACATTGTTCCCTCTAAACAAGTATCAATAAATGAACTAACAGTTCTTTCTTTTTTAAAATCGATATTAAAGGTTAAGCTTTATGCCGGCGGCCAAAGTATTCGAGTCCCAGCAAAGCAGTCGAATATGATATCATAGATAAGGTACCAGAATTACAAAGTGCTACCAATTTATCACATGTTATTGAAACTGTGCATTAAATTGCATATCATTTACTTCCATCAGGTACTACAAAATGAAAGAACTGAAGATCAGGGAGTTATATCTGACCTGAAAAAAGCCTCAGAGAACTGAAATCTGGAATCCTCATGCAGTATTGCGTGCTTATAAACTTCCAATCTCTGAGGAACTTGCTGAATTCAACTCTAGAACAATGCTGCAAAAAAGGAAAACTGATGAACATTATTGATGTTCATCTTCAACCAGAAACTCCTGCCTTTTATGTTATCTTCTTCTGTTGTATCTAAAATTAAGGAACAATCTCATACAATGAATAAATATCAGCCATTTCTCCAGGATGAACACTACAATTT

mRNA sequence

ATGAATACGAAATATGAAGGCAGAACTGTCATAGATTCCATGCCAACCTCACATTCCACCAATGGACAGCAGCATGCTTTATGCCGGCGGCCAAAGTATTCGAGTCCCAGCAAAGCAGTCGAATATGATATCATAGATAAGGTACTACAAAATGAAAGAACTGAAGATCAGGGAGTTATATCTGACCTGAAAAAAGCCTCAGAGAACTGAAATCTGGAATCCTCATGCAGTATTGCGTGCTTATAAACTTCCAATCTCTGAGGAACTTGCTGAATTCAACTCTAGAACAATGCTGCAAAAAAGGAAAACTGATGAACATTATTGATGTTCATCTTCAACCAGAAACTCCTGCCTTTTATGTTATCTTCTTCTGTTGTATCTAAAATTAAGGAACAATCTCATACAATGAATAAATATCAGCCATTTCTCCAGGATGAACACTACAATTT

Coding sequence (CDS)

ATGAATACGAAATATGAAGGCAGAACTGTCATAGATTCCATGCCAACCTCACATTCCACCAATGGACAGCAGCATGCTTTATGCCGGCGGCCAAAGTATTCGAGTCCCAGCAAAGCAGTCGAATATGATATCATAGATAAGGTACTACAAAATGAAAGAACTGAAGATCAGGGAGTTATATCTGACCTGAAAAAAGCCTCAGAGAACTGA

Protein sequence

MNTKYEGRTVIDSMPTSHSTNGQQHALCRRPKYSSPSKAVEYDIIDKVLQNERTEDQGVISDLKKASEN

Homology

[Close]

BLAST of CmaCh16G011060 vs. ExPASy Swiss-Prot
Match: Q8LB10 (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-07
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 23  QQHALCRRPKYSSPSKAVEYDIIDKVLQNER-TEDQGVISDLKKA 67
           Q  A  +RPKY SP++AVEY IIDKV+ NER ++D+GV+SDLKKA
Sbjct: 258 QIEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDRGVVSDLKKA 302

[Close]

BLAST of CmaCh16G011060 vs. TAIR 10
Match: AT4G17040.1 (CLP protease R subunit 4 )

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-08
Identity = 29/45 (64.44%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 23  QQHALCRRPKYSSPSKAVEYDIIDKVLQNER-TEDQGVISDLKKA 67
           Q  A  +RPKY SP++AVEY IIDKV+ NER ++D+GV+SDLKKA
Sbjct: 258 QIEADMKRPKYFSPTEAVEYGIIDKVVYNERGSQDRGVVSDLKKA 302

The following BLAST results are available for this feature:

BLAST of CmaCh16G011060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LB10	2.8e-07	64.44	ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ...	[more]

BLAST of CmaCh16G011060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17040.1	2.0e-08	64.44	CLP protease R subunit 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G011060.1	CmaCh16G011060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009368	endopeptidase Clp complex
cellular_component	GO:0009526	plastid envelope
molecular_function	GO:0051117	ATPase binding
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0004252	serine-type endopeptidase activity